MicroRNA-370-5p inhibits pigmentation and cell proliferation by downregulating mitogen-activated protein kinase kinase kinase 8 expression in sheep melanocytes
In mammals, microRNAs (miRNAs) play key roles in multiple biological processes by regulating the expression of target genes. Studies have found that the levels of miR-370-5p expression differ significantly in the skins of sheep with different hair colors; however, its function remains unclear. In this study, we investigated the roles of miR-370-5p in sheep melanocytes and found that the overexpression of miR-370-5p significantly inhibited cell proliferation (P<0.01), tyrosinase activity (P=0.001) and significantly reduced (P<0.001) melanin production. Functional prediction revealed that the 3´-untranslated region (UTR) of MAP3K8 has a putative miR-370-5p binding site, and the interaction between these two molecules was confirmed using luciferase reporter assays. In situ hybridization assays revealed that MAP3K8 is expressed in the cytoplasm of melanocytes. The results of quantitative RT-PCR and Western blotting analyses revealed that overexpression of miR-370-5p in melanocytes significantly inhibits (P<0.01) MAP3K8 expression via direct targeting of its 3´ UTR. Inhibition of MAP3K8 expression by siRNA-MAP3K8 transfection induced a significant inhibition (P<0.01) of melanocyte proliferation and significant reduction (P<0.001) in melanin production, which is consistent with our observations for miR-370-5p. Target gene rescue experiments indicated that the expression of MAP3K8 in melanocytes co-transfected with miR-370-5p and MAP3K8-cDNA (containing sites for the targeted binding to miR-370-5p) was significantly rescued (P≤0.001), which subsequently promoted significant increases in cell proliferation (P<0.001) and melanin production (P<0.01). Collectively, these findings indicate that miR-370-5p plays a functional role in inhibiting sheep melanocyte proliferation and melanogenesis by downregulating the expression of MAP3K8.
Plant height is a key plant architectural trait that affects the seed yield, harvest index and lodging resistance in Brassica napus L., although the genetic mechanisms affecting plant height remain unclear. Here, a semi-dwarf mutant, df34, was obtained by ethyl methanesulphonate-induced mutagenesis. Genetic analysis showed that the semi-dwarf phenotype is controlled by one semi-dominant gene, which was located on chromosome C03 using a bulked segregant analysis coupled with whole-genome sequencing, and this gene was named BnaSD.C3. Then BnaSD.C3 was fine-mapped to a 297.35-kb segment of the “Darmor-bzh” genome, but there was no potential candidate gene for the semi-dwarf trait underlying this interval. Furthermore, the interval was aligned to the Zhongshuang 11 reference genome. Finally, combining structural variation analysis, transcriptome sequencing, phytohormone analyses and gene annotation information, BnaC03G0466900ZS and BnaC03G0478900ZS were determined to be the most likely candidate genes affecting the plant height of df34. This study provides a novel major locus for breeding and new insights into the genetic architecture of plant height in B. napus
Utilizing the heterosis of indica/japonica hybrid rice (IJHR) is an effective way to further increase rice grain yield. Rational application of nitrogen (N) fertilizer plays a very important role in using the heterosis of IJHR to achieve its great yield potential. However, the responses of the grain yield and N utilization of IJHR to N application rates and the underlying physiological mechanism remain elusive. The purpose of this study was to clarify these issues. Three rice cultivars currently used in rice production, an IJHR cultivar Yongyou 2640 (YY2640), a japonica cultivar Lianjing 7 (LJ-7) and an indica cultivar Yangdao 6 (YD-6), were grown in the field with six N rates (0, 100, 200, 300, 400, and 500 kg ha–1) in 2018 and 2019. The results showed that with the increase in N application rates, the grain yield of each test cultivar increased at first and then decreased, and the highest grain yield was at the N rate of 400 kg ha–1 for YY2640, with a grain yield of 13.4 t ha–1, and at 300 kg ha–1 for LJ-7 and YD-6, with grain yields of 9.4–10.6 t ha–1. The grain yield and N use efficiency (NUE) of YY2640 were higher than those of LJ-7 or YD-6 at the same N rate, especially at the higher N rates. When compared with LJ-7 or YD-6, YY2640 exhibited better physiological traits, including greater root oxidation activity and leaf photosynthetic rate, higher cytokinin content in the roots and leaves, and more remobilization of assimilates from the stem to the grain during grain filling. The results suggest that IJHR could attain both higher grain yield and higher NUE than inbred rice at either low or high N application rates. Improved shoot and root traits of the IJHR contribute to its higher grain yield and NUE, and a higher content of cytokinins in the IJHR plants plays a vital role in their responses to N application rates and also benefits other physiological processes.
Investigating the dynamics and distribution of soil phosphorus (P) fractions can provide a basis for enhancing P utilization by crops. Four treatments from a 29-year long-term experiment in black soil with maize cropping were involved in this study: no fertilizer (CK), inorganic nitrogen and potassium (NK), inorganic nitrogen, phosphorus, and potassium (NPK), and NPK plus manure (NPKM). We analyzed soil P fractions in different soil layers using a modified Hedley sequential method. The long-term NPKM treatment significantly increased total P by 0.6–1.6 times in the different soil layers. The Olsen-P concentration far exceeded the environmental threshold for soil Olsen-P (50.6 mg kg–1) in the NPKM treatment in the 0–60 cm soil profile. Moreover, the concentrations and proportion of labile and partially labile inorganic P (Pi) fractions (i.e., NaHCO3-extracted Pi, NaOH-extracted Pi, and dilute HCl-extracted Pi) to the sum of all P fractions (Pt) in the 0–60 cm soil profile were higher in the NPKM treatment than in the NPK treatment, indicating that manure could promote the transformation of non-labile into more labile forms of P in soil, possibly by manure reducing P fixation by soil particles. Soil organic matter, Mehlich-3 extractable iron (Fe), and organic-bound aluminum were increased by fertilization, and were the main factors influencing the differences in the P fractions in the 0–20 cm soil layer. Soil mineral components, i.e., free Fe oxide and CaCO3, were the main factors influencing the P fractions in the subsoil. The soil P transformation process varied with soil layer and fertilization. Application of manure fertilizer can increase the labile (Olsen) P concentrations of the various soil layers, and thus should reduce the mineral P fertilizer requirement for crop growth and reduce potential environmental damage
Salinity threatens soybean germination, growth and production. The germination stage is a key period in the life of soybean. Wild soybean contains many genes related to stress resistance that are valuable resources for the genetic improvement of soybean. To identify the genetic loci of wild soybean that are active during seed germination under salt stress, two populations, a soybean interspecific hybrid population comprising 142 lines and a natural population comprising 121 wild soybean accessions, were screened for three germination-related traits in this study. By using single-nucleotide polymorphism (SNP) markers with three salt tolerance indices, 25 quantitative trait loci (QTLs), 21 significant SNPs (–log10(P)≥4.0) and 24 potential SNPs (3.5<–log10(P)<4.0) were detected by linkage mapping and a genome-wide association study (GWAS) in two environments. The key genetic region was identified based on these SNPs and QTLs. According to the gene functional annotations of the W05 genome and salt-induced gene expression qRT-PCR analysis, GsAKR1 was selected as a candidate gene that responded to salt stress at the germination stage in the wild soybean. These results could contribute to determining the genetic networks of salt tolerance in wild soybean and will be helpful for molecular marker-assisted selection in the breeding of salt-tolerant soybean.
The concentration of soil Olsen-P is rapidly increasing in many parts of China, where P budget (P input minus P output) is the main factor influencing soil Olsen-P. Understanding the relationship between soil Olsen-P and P budget is useful in estimating soil Olsen-P content and conducting P management strategies. To address this, a long-term experiment (1991–2011) was performed on a fluvo-aquic soil in Beijing, China, where seven fertilization treatments were used to study the response of soil Olsen-P to P budget. The results showed that the relationship between the decrease in soil Olsen-P and P deficit could be simulated by a simple linear model. In treatments without P fertilization (CK, N, and NK), soil Olsen-P decreased by 2.4, 1.9, and 1.4 mg kg–1 for every 100 kg ha–1 of P deficit, respectively. Under conditions of P addition, the relationship between the increase in soil Olsen-P and P surplus could be divided into two stages. When P surplus was lower than the range of 729–884 kg ha–1, soil Olsen-P fluctuated over the course of the experimental period with chemical fertilizers (NP and NPK), and increased by 5.0 and 2.0 mg kg–1, respectively, when treated with chemical fertilizers combined with manure (NPKM and 1.5NPKM) for every 100 kg ha–1 of P surplus. When P surplus was higher than the range of 729–884 kg ha–1, soil Olsen-P increased by 49.0 and 37.0 mg kg–1 in NPKM and 1.5NPKM treatments, respectively, for every 100 kg ha–1 P surplus. The relationship between the increase in soil Olsen-P and P surplus could be simulated by two-segment linear models. The cumulative P budget at the turning point was defined as the “storage threshold” of a fluvo-aquic soil in Beijing, and the storage thresholds under NPKM and 1.5NPKM were 729 and 884 kg ha–1 P for more adsorption sites. According to the critical soil P values (CPVs) and the relationship between soil Olsen-P and P budget, the quantity of P fertilizers for winter wheat could be increased and that of summer maize could be decreased based on the results of treatments in chemical fertilization. Additionally, when chemical fertilizers are combined with manures (NPKM and 1.5NPKM), it could take approximately 9–11 years for soil Olsen-P to decrease to the critical soil P values of crops grown in the absence of P fertilizer.