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Analysis of genetic diversity and population structure in sweetpotato using SSR markers
LIU Cheng, ZHAO Ning, JIANG Zhi-cheng, ZHANG Huan, ZHAI Hong, HE Shao-zhen, GAO Shao-pei, LIU Qing-chang
2023, 22 (11): 3408-3415.   DOI: 10.1016/j.jia.2023.02.004
Abstract196)      PDF in ScienceDirect      
Sweetpotato, Ipomoea batatas (L.) Lam., is an important food crop worldwide.  Large scale evaluation of sweetpotato germplasm for genetic diversity is necessary to determine the genetic relationships between them and effectively use them in the genetic improvement.  In this study, the genetic diversity of 617 sweetpotato accessions, including 376 landraces and 162 bred varieties from China and 79 introduced varieties from 11 other countries, was assessed using 30 simple sequence repeat (SSR) primer pairs with high polymorphism.  Based on the population structure analysis, these sweetpotato accessions were divided into three groups, Group 1, Group 2 and Group 3, which included 228, 136 and 253 accessions, respectively.  Consistent results were obtained by phylogenic analysis and principal coordinate analysis (PCoA).  Of the three groups, Group 2 showed the highest level of genetic diversity and its accessions were mainly distributed in low-latitude regions.  The accessions from South China exhibited the highest level of genetic diversity, which supports the hypothesis that Fujian and Guangdong were the first regions where sweetpotato was introduced to China.  Analysis of molecular variance (AMOVA) indicated significant genetic differentiations between the different groups, but low levels of genetic differentiation existed between the different origins and accession types.  These results provide valuable information for the better utilization of these accessions in sweetpotato breeding.
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A geranylgeranyl pyrophosphate synthase gene, IbGGPS, increases carotenoid contents in transgenic sweetpotato
LI Rui-jie, ZHAI Hong, HE Shao-zhen, ZHANG Huan, ZHAO Ning, LIU Qing-chang
2022, 21 (9): 2538-2546.   DOI: 10.1016/j.jia.2022.07.029
Abstract234)      PDF in ScienceDirect      

Geranylgeranyl pyrophosphate synthase (GGPS) plays an important role in the biosynthesis of carotenoids.  In a previous study, the IbGGPS gene was isolated from a sweetpotato, Ipomoea batatas (L.) Lam., line Nongdafu 14 with high carotenoid contents, but its role and underlying mechanisms in carotenoid biosynthesis in sweetpotato were not investigated.  In the present study, the IbGGPS gene was introduced into a sweetpotato cv. Lizixiang and the contents of β-carotene, β-cryptoxanthin, zeaxanthin and lutein were significantly increased in the storage roots of the IbGGPS-overexpressing sweetpotato plants.  Further analysis showed that IbGGPS gene overexpression systematically up-regulated the genes involved in the glycolytic, 2-C-methyl-D-erythritol-4-phosphate (MEP) and carotenoid pathways, which increased the carotenoid contents in the transgenic plants.  These results indicate that the IbGGPS gene has the potential for use in improving the carotenoid contents in sweetpotato and other plants.

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Yield penalty of maize (Zea mays L.) under heat stress in different growth stages: A review
LI Teng, ZHANG Xue-peng, LIU Qing, LIU Jin, CHEN Yuan-quan, SUI Peng
2022, 21 (9): 2465-2476.   DOI: 10.1016/j.jia.2022.07.013
Abstract633)      PDF in ScienceDirect      
Maize (Zea mays L.) can exhibit yield penalties as a result of unfavorable changes to growing conditions.  The main threat to current and future global maize production is heat stress.  Maize may suffer from heat stress in all of the growth stages, either continuously or separately.  In order to manage the impact of climate driven heat stress on the different growth stages of maize, there is an urgent need to understand the similarities and differences in how heat stress affects maize growth and yield in the different growth stages.  For the purposes of this review, the maize growth cycle was divided into seven growth stages, namely the germination and seedling stage, early ear expansion stage, late vegetative growth stage before flowering, flowering stage, lag phase, effective grain-filling stage, and late grain-filling stage.  The main focus of this review is on the yield penalty and the potential physiological changes caused by heat stress in these seven different stages.  The commonalities and differences in heat stress related impacts on various physiological processes in the different growth stages are also compared and discussed.  Finally, a framework is proposed to describe the main influences on yield components in different stages, which can serve as a useful guide for identifying management interventions to mitigate heat stress related declines in maize yield.
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Nitrogen application affects maize grain filling by regulating grain water relations
WU Ya-wei, ZHAO Bo, LI Xiao-long, LIU Qin-lin, FENG Dong-ju, LAN Tian-qiong, KONG Fan-lei, LI Qiang, YUAN Ji-chao
2022, 21 (4): 977-994.   DOI: 10.1016/S2095-3119(20)63589-4
Abstract292)      PDF in ScienceDirect      
Grain water relations play an important role in grain filling in maize.  The study aimed to gain a clear understanding of the changes in grain dry weight and water relations in maize grains by using hybrids with contrasting nitrogen efficiencies under differing nitrogen levels.  The objectives were: 1) to understand the changes in dry matter and percent moisture content (MC) during grain development in response to different nitrogen application rates and 2) to determine whether nitrogen application affects grain filling by regulating grain water relations.  Two maize hybrids, high N-efficient Zhenghong 311 (ZH311) and low N-efficient Xianyu 508 (XY508), were grown in the field under four levels of N fertilizer: 0, 150, 300, and 450 kg N ha–1 during three growing seasons.  Dry weight, percent MC and water content (WC) of basal–middle and apical grains were investigated.  The difference in the maximum WC and filling duration of basal–middle and apical grains in maize ears resulted in a significant difference in final grain weight.  Grain position markedly influenced grain drying down; specifically, the drying down rate of apical grains was faster than that of basal–middle grains.  Genotype and grain position both influenced the impact of nitrogen application rate on grain filling and drying down.  Nitrogen rate determined the maximum grain WC and percent MC loss rate in the middle and the late grain-filling stages, thus affecting final grain weight.  The use of high N-efficient hybrids, combined with the reduction of nitrogen application rate, can coordinate basal–middle and apical grain drying down to ensure yield.  This management strategy could lead to a win–win situation in which the maximum maize yield, efficient mechanical harvest and environmental safety are all achieved. 

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Dispersal routes of Cercospora zeina causing maize gray leaf spot in China
DUAN Can-xing, ZHAO Li-ping, WANG Jie, LIU Qing-kui, YANG Zhi-huan, WANG Xiao-ming
2022, 21 (10): 2943-2956.   DOI: 10.1016/j.jia.2022.07.042
Abstract182)      PDF in ScienceDirect      

The gray leaf spot caused by Cercospora zeina has become a serious disease in maize in China.  The isolates of C. zeina from Yunnan, Sichuan, Guizhou, Hubei, Chongqing, Gansu, and Shaanxi were collected.  From those, 127 samples were used for genetic diversity analysis based on inter-simple sequence repeat (ISSR) and 108 samples were used for multi-gene sequence analysis based on five gene fragments.  The results indicated that populations of C. zeina were differentiated with a relatively high genetic level and were classified into two major groups and seven subgroups.  The intra-population genetic differentiation of C. zeina is the leading cause of population variation in China, and inter-population genetic similarity is closely related to the colonization time and spread direction.  The multi-gene sequence analysis of C. zeina isolates demonstrated that there were nine haplotypes.  Genetic diversity and multi-gene sequence revealed that Yunnan population of C. zeina, the earliest colonizing in China, had the highest genetic and haplotype diversity and had experienced an expansion event.  With the influence of the southwest monsoon in the Indian Ocean, C. zeina from Yunnan gradually moved to Sichuan, Guizhou, Shaanxi, Gansu, and Chongqing.  Meanwhile, C. zeina was transferred directly from the Yunnan into the Hubei Province via seed and then came into Shaanxi, Henan, and Chongqing along with the wind from Hubei.

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Potential influence of carbohydrate and amino acid intake by adults on the population dynamics of Cnaphalocrocis medinalis (Lepidoptera: Crambidae)
LI Chuan-ming, XU Jian, LIU Qin, HAN Guang-jie, XU Bin, YANG Yi-zhong, LIU Xian-jin
2021, 20 (7): 1889-1897.   DOI: 10.1016/S2095-3119(20)63419-0
Abstract124)      PDF in ScienceDirect      
Cnaphalocrocis medinalis is a key lepidopteran pest of rice.  However, little is known about the nutritional requirements of the adult or the effects of adult-derived nutrients on reproduction.  The aim of the present study was to evaluate the effects of carbohydrates and amino acids on the reproductive and demographic parameters of C.?medinalis.  Different feeding solutions significantly influenced adult survival and reproduction.  All the sources of carbohydrates used in the treatments (fructose, glucose, and sucrose) were sufficient to increase adult longevity and fecundity, and benefited the development of ovaries in the adult stage.  The positive impact of carbohydrates on lifetime fecundity was due to the prolonged oviposition period and the increased daily fecundity.  The intrinsic rate of increase (rm) of C.?medinalis increased from 0.103 in water-fed individuals to approximately 0.138 when adults were fed with solutions containing carbohydrates.  In contrast, amino acid intake by adult insects exhibited no effect on the longevity, fecundity, ovarian development or population growth, even showing an impact of decreasing longevity of females.  As nectar secreted by the flowering plant is generally rich in sugars, the potential effects of nectar on the adults of C.?medinalis and other pests have to be considered during the development of biological control by applying flowering plants as a microhabitat and food source for natural enemies in rice fields.
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BmApontic is involved in neurodevelopment in the silkworm Bombyx mori
MENG Miao, YU Qi, WANG Qin, LIU Chun, LIU Zhao-yang, REN Chun-jiu, CUI Wei-zheng, LIU Qing-xin
2020, 19 (6): 1439-1446.   DOI: 10.1016/S2095-3119(19)62787-5
Abstract100)      PDF in ScienceDirect      
The nervous system of the silkworm is vital for the development of organisms.  It achieves and maintains normal life activities by regulating the function of the organs and all kinds of physiological processes in the silkworm.  BmApontic (BmApt), as an important bZIP transcription factor, is required for the formation of pigmentation in the silkworm.  However, the function of BmApt in the development of the nervous system of the silkworm remains unclear.  Here, we showed that amino acid sequence of BmApt was evolutionarily conserved in its Myb/SANT motif and basic DNA binding domain.  BmApt was expressed in the nervous system at the embryonic stage.  Knockdown of Bmapt by RNA interference resulted in abnormal development of axons.  Moreover, the expression of BmnetrinA, BmnetrinB and Bmfrazzled was decreased in the Bmapt knockdown embryos.  These results demonstrate that BmApt controls neurodevelopment by activating the expression of Bmnetrin and Bmfrazzled
 
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Translocation and recovery of 15N-labeled N derived from the foliar uptake of 15NH3 by the greenhouse tomato (Lycopersicon esculentum Mill.)
HUANG Hui-ying, LI Huan, XIANG Dan, LIU Qing, LI Fei, LIANG Bin
2020, 19 (3): 859-865.   DOI: 10.1016/S2095-3119(19)62670-5
Abstract107)      PDF in ScienceDirect      
In order to completely evaluate ammonia emission from greenhouse vegetable fields, crop canopy absorption should not be neglected.  The foliar uptake of NH3 applied at two growth stages and the subsequent 15N-labeled N translocation to other plant components were investigated under greenhouse conditions using chambers covered with the soil of a tomato field.  Treatments comprised three NH3-N application rates (70, 140, and 210 mg/plot) using 15N-labeled ammonium sulfate.  Plants were harvested immediately after exposure for 24 h, and the total N concentrations and 15N/14N ratios were determined.  With increased NH3 concentration, total 15NH3-N absorption increased considerably, whereas the applied 15NH3-N uptake decreased gradually.  The tomato plants absorbed 33–38% and 24–31% of the 15NH3-N generated at the anthesis and fruit growth stages, respectively.  A total of 71–80% of the recovered NH3 was observed in the leaves and 20–30% of the recovered NH3 was remobilized to other components.  Among them, an average of 10% of the absorbed 15NH3-N was transferred into the tomato fruits.  All these results indicated the potential of the tested tomatoes for the foliar uptake of atmospheric 15NH3 and the distribution of 15N-labeled vegetative N among different plant components.  The results are of great importance for the complete evaluation of nitrogen use efficiency in the greenhouse tomato fields.
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Field effect of Cnaphalocrocis medinalis granulovirus (CnmeGV) on the pest of rice leaffolder
XU Jian, LIU Qin, LI Chuan-ming, HAN Guang-jie
2019, 18 (9): 2115-2122.   DOI: 10.1016/S2095-3119(18)62097-0
Abstract139)      PDF in ScienceDirect      
Rice leaffolder, Cnaphalocrocis medinalis (Guenée), has become a major pest throughout the rice cultivating areas of China and caused severe damage to rice production.  Cnaphalocrocis medinalis granulovirus (CnmeGV), a naturally occurring baculovirus, is revealed as a potential microbial agent for the pest control.  Field applications of CnmeGV were conducted against rice leaffolder larvae in rice paddies.  CnmeGV infected the larvae not only in the current generation but also in the successive generation, resulting in a sustained infection in the larva population for at least 48 days.  Under diferent concentrations of CnmeGV (7.5×1011 and 1.125×1012 occlusion body (OB) ha–1) at 30 days after spraying, larval population reduced up to 76.32% and rice leaf rolled rate kept in 15.42%.  Simultaneously, CnmeGV had no impact on arthropod predators of C. medinalis, with abundances ranging from 2.39 to 3.79 per ten hills.  These results revealed that CnmeGV is suitable as a bio-pesticide for rice leaffolder management in rice paddies.
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The impacts of climate change on wheat yield in the Huang-Huai- Hai Plain of China using DSSAT-CERES-Wheat model under different climate scenarios
QU Chun-hong, LI Xiang-xiang, JU Hui, LIU Qin
2019, 18 (6): 1379-1391.   DOI: 10.1016/S2095-3119(19)62585-2
Abstract241)      PDF in ScienceDirect      
Climate change has been documented as a major threat to current agricultural strategies.  Progress in understanding the impact of climate change on crop yield is essential for agricultural climate adaptation, especially for the Huang-Huai-Hai Plain (3H Plain) of China which is an area known to be vulnerable to global warming.  In this study, the impacts of climate change on winter wheat (Triticum aestivum L.) yield between the baseline period (1981–2010) and two Representative Concentration Pathways (RCP8.5 and RCP4.5) were simulated for the short-term (2010–2039), the medium-term (2040–2069) and the long-term (2070–2099) in the 3H Plain, by considering the relative contributions of changes in temperature, solar radiation and precipitation using the DSSAT-CERES-Wheat model.  Results indicated that the maximum and minimum temperatures (TMAX and TMIN), solar radiation (SRAD), and precipitation (PREP) during the winter wheat season increased under these two RCPs.  Yield analysis found that wheat yield increased with the increase in SRAD, PREP and CO2 concentration, but decreased with an increase in temperature.  Increasing precipitation contributes the most to the total impact, increasing wheat yield by 9.53, 6.62 and 23.73% for the three terms of future climate under RCP4.5 scenario, and 11.74, 16.38 and 27.78% for the three terms of future climate under RCP8.5 scenario.  However, as increases in temperature bring higher evapotranspiration, which further aggravated water deficits, the supposed negative effect of increasing thermal resources decreased wheat yield by 1.92, 4.08 and 5.24% for the three terms of future climate under RCP4.5 scenario, and 3.64, 5.87 and 5.81% for the three terms of future climate under RCP8.5 scenario with clearly larger decreases in RCP8.5.  Counterintuitively, the impacts in southern sub-regions were positive, but they were all negative in the remaining sub-regions.  Our analysis demonstrated that in the 3H Plain, which is a part of the mid-high latitude region, the effects of increasing thermal resources were counteracted by the aggravated water deficits caused by the increase in temperature.
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Transcriptome profiling reveals insights into the molecular mechanism of drought tolerance in sweetpotato
ZHU Hong, ZHOU Yuan-yuan, ZHAI Hong, HE Shao-zhen, ZHAO Ning, LIU Qing-chang
2019, 18 (1): 9-24.   DOI: 10.1016/S2095-3119(18)61934-3
Abstract282)      PDF in ScienceDirect      
Sweetpotato, Ipomoea batatas (L.) Lam., is a globally important food crop and usually grown on arid- and semi-arid lands.  Therefore, investigating the molecular mechanism of drought tolerance will provide important information for the improvement of drought tolerance in this crop.  In this study, transcriptome analysis of the drought-tolerant sweetpotato line Xushu 55-2 was conducted on Illumina HiSeq 2500 platform.  A total of 86.69 Gb clean data were generated and assembled into 2 671 693 contigs, 222 073 transcripts, and 73 636 unigenes.  In total, 11 359 differentially expressed genes (DEGs) were identified after PEG6000 treatment, in which 7 666 were up-regulated and 3 693 were down-regulated.  Of the 11 359 DEGs, 10 192 DEGs were annotated in at least one database, and the remaining 1 167 DEGs were unknown.  Abscisic acid (ABA), ethylene (ETH), and jasmonic acid (JA) signalling pathways play a major role in drought tolerance of sweetpotato.  Drought-inducible transcription factors were identified, some of which have been reported to be associated with drought tolerance and others are unknown in plants.  In addition, 7 643 SSRs were detected.  This study not only reveals insights into the molecular mechanism of drought tolerance in sweetpotato but also provides the candidate genes involved in drought tolerance of this crop.
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Exogenous application of a low concentration of melatonin enhances salt tolerance in rapeseed (Brassica napus L.) seedlings
ZENG Liu, CAI Jun-song, LI Jing-jing, LU Guang-yuan, LI Chun-sheng, FU Gui-ping, ZHANG Xue-kun, MA Hai-qing, LIU Qing-yun, ZOU Xi-ling, CHENG Yong
2018, 17 (2): 328-335.   DOI: 10.1016/S2095-3119(17)61757-X
Abstract827)      PDF in ScienceDirect      
Melatonin is a naturally occurring compound in plants.  Here, we tested the effect of exogenous melatonin on rapeseed (Brassica napus L.) grown under salt stress.  Application of 30 μmol L–1 melatonin alleviated salt-induced growth inhibition, and the shoot fresh weight, the shoot dry weight, the root fresh weight, and the root dry weight of seedlings treated with exogenous melatonin increased by 128.2, 142.9, 122.2, and 124.2%, respectively, compared to those under salt stress.  In addition, several physiological parameters were evaluated.  The activities of antioxidant enzymes including peroxidase (POD), catalase (CAT) and ascorbate peroxidase (APX) were enhanced by 16.5, 19.3, and 14.2% compared to their activities in plants without exogenous melatonin application under salt stress, while the H2O2 content was decreased by 11.2% by exogenous melatonin.  Furthermore, melatonin treatment promoted solute accumulation by increasing the contents of proline (26.8%), soluble sugars (15.1%) and proteins (58.8%).  The results also suggested that higher concentrations (>50 μmol L–1) of melatonin could attenuate or even prevent the beneficial effects on seedling development.  In conclusion, application of a low concentration of exogenous melatonin to rapeseed plants under salt stress can improve the H2O2-scavenging capacity by enhancing the activities of antioxidant enzymes such as POD, CAT and APX, and can also alleviate osmotic stress by promoting the accumulation of osmoregulatory substances such as soluble proteins, proline, and water soluble glucan.  Ultimately, exogenous melatonin facilitates root development and improves the biomass of rapeseed seedlings grown under salt stress, thereby effectively alleviating the damage of salt stress in rapeseed seedlings.
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Overexpression of IbSnRK1 enhances nitrogen uptake and carbon assimilation in transgenic sweetpotato
REN Zhi-tong, ZHAO Hong-yuan, HE Shao-zhen, ZHAI Hong, ZHAO Ning, LIU Qing-chang
2018, 17 (2): 296-305.   DOI: 10.1016/S2095-3119(16)61611-8
Abstract1094)      PDF in ScienceDirect      
Nitrogen is an important nutrient for plant development.  Nitrogen and carbon metabolisms are tightly linked to physiological functions in plants.  In this study, we found that the IbSnRK1 gene was induced by Ca(NO3)2.  Its overexpression enhanced nitrogen uptake and carbon assimilation in transgenic sweetpotato.  After Ca(15NO3)2 treatment, the 15N atom excess, 15N and total N content and nitrogen uptake efficiency (NUE) were significantly increased in the roots, stems, and leaves of transgenic plants compared with wild type (WT) and empty vector control (VC).  After Ca(NO3)2 treatment, the increased nitrate N content, nitrate reductase (NR) activity, free amino acid content, and soluble protein content were found in the roots or leaves of transgenic plants.  The photosynthesis and carbon assimilation were enhanced.  These results suggest that the IbSnRK1 gene play a important role in nitrogen uptake and carbon assimilation of sweetpotato.  This gene has the potential to be used for improving the yield and quality of sweetpotato.
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SSR fingerprinting of 203 sweetpotato (Ipomoea batatas (L.) Lam.) varieties
MENG Yu-sha, ZHAO Ning, LI Hui, ZHAI Hong, HE Shao-zhen, LIU Qing-chang
2018, 17 (01): 86-93.   DOI: 10.1016/S2095-3119(17)61687-3
Abstract646)      PDF in ScienceDirect      
Simple sequence repeat (SSR) markers have been shown to be a powerful tool for varieties identification in plants.  However, SSR fingerprinting of sweetpotato varieties has been a little reported.  In this study, a total of 1 294 SSR primer pairs, including 1 215 genomic-SSR and 79 expressed sequence tag (EST)-SSR primer pairs, were screened with sweetpotato varieties Zhengshu 20 and Luoxushu 8 and their 2 F1 individuals randomly sampled, and 273 and 38 of them generated polymorphic bands, respectively.  Four genomic-SSR and 3 EST-SSR primer pairs, which showed good polymorphism, were selected to amplify 203 sweetpotato varieties and gave a total of 172 bands, 85 (49.42%) of which were polymorphic.  All of the 203 sweetpotato varieties showed unique fingerprint patterns, indicating the utility of SSR markers in variety identification of this crop.  Polymorphism information content (PIC) ranged from 0.5824 to 0.9322 with an average of 0.8176.  SSR-based genetic distances varied from 0.0118 to 0.6353 with an average of 0.3100 among these varieties.  Thus, these sweetpotato varieties exhibited high levels of genetic similarity and had distinct fingerprint profiles.  The SSR fingerprints of the 203 sweetpotato varieties have been successfully constructed.  The highly polymorphic SSR primer pairs developed in this study have the potential to be used as core primer pairs for variety identification, genetic diversity assessment and linkage map construction in sweetpotato and other plants.
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Genetic diversity and population structure of 288 potato (Solanum tuberosum L.) germplasms revealed by SSR and AFLP markers
WANG Jian, HOU Lu, WANG Ruo-yu, HE Miao-miao, LIU Qing-chang
2017, 16 (11): 2434-2443.   DOI: 10.1016/S2095-3119(16)61619-2
Abstract686)      PDF in ScienceDirect      
Potato (Solanum tuberosum L.) is an important staple food and economic crop in many countries.  China has led world potato production in recent years.  To understand the genetic diversity of potato germplasms and to enrich the current gene pool for potato improvement, we made a global collection consisted of 288 potato germplasms from eight countries and the International Potato Center (CIP).  Using SSR and AFLP techniques, we evaluated the genetic diversity and population structure of these 288 potato accessions.  A total of 190 alleles on 20 SSR loci were detected and all of the SSR alleles were polymorphic among these potato germplasms with an average of 9.5 alleles per SSR locus ranging from 2 to 23.  The effective number of alleles per locus (Ne*), Nei’s genetic diversity (H*), and Shannon’s information index (I*) was from (0.1709±0.3698) to (1.6166±0.3414), (0.076±0.1388) to (0.3812±0.1886), and (0.1324±0.1970) to (0.5347±0.1440), respectively, and the mean polymorphic information content (PIC) value was 0.7312.  A total of 988 AFLP alleles were detected by 10 AFLP primer combinations with 983 polymorphic alleles, and 99.49% alleles was polymorphic with an average of 98.3 polymorphic alleles per primer combination ranging from 91 to 116.  The values of Ne*, H* and I* were from (1.5162±0.311) to (1.6423±0.3278), (0.3114±0.145) to (0.3675±0.1121), and (0.4761±0.1792) to (0.547±0.1322), respectively, and the average PIC value was 0.9871.  Bayesian analysis discriminated the accessions into seven subgroup and an admix group.  The majority of accessions from CIP and China were assigned into SG1, SG5, SG6, SG7 and admix group.  Accessions in SG3 were mainly from CIP and two small groups SG2 and SG4 were mainly from northeastern China.  In general, the results obtained from Bayesian statistical analysis, cluster analysis and principal coordinate analysis consistently revealed the lack of geographical differentiation among country-wide collections, indicating germplasm introduction was common for the countries out of potato origin center.  The polymorphic markers and the differentiate genetic lineages found in this study provide useful information for potato improvement and conservation programs.  
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Spatiotemporal variation of drought characteristics in the Huang-Huai-Hai Plain, China under the climate change scenario
LI Xiang-xiang, JU Hui, Sarah Garré, YAN Chang-rong, William D. Batchelor, LIU Qin
2017, 16 (10): 2308-2322.   DOI: 10.1016/S2095-3119(16)61545-9
Abstract568)      PDF in ScienceDirect      
Understanding the potential drought characteristics under climate change is essential to reduce vulnerability and establish adaptation strategies, especially in the Huang-Huai-Hai Plain (3H Plain), which is a major grain production area in China.  In this paper, we investigated the variations in drought characteristics (drought event frequency, duration, severity, and intensity) for the past 50 years (1961–2010) and under future scenarios (2010–2099), based on the observed meteorological data and the Representative Concentration Pathway (RCP) 8.5 scenario, respectively.  First, we compared the applicability of three climatic drought indices: the standardized precipitation index (SPI), the standardized precipitation evapotranspiration index based on the Penman-Monteith equation (SPEI-PM) and the same index based on the Thornthwaite equation (SPEI-TH) to correlate the recorded agricultural drought areas.  Then, we analyzed the drought characteristics using ‘run theory’ for both historical and the future RCP 8.5 scenario based on the best performing index.  Correlation analyses between drought indices and agricultural drought areas showed that SPEI-PM performed better than SPI and SPEI-TH in the 3H Plain.  Based on the results of SPEI-PM, drought risks including duration, severity and intensity during 1961–2010 showed an decreasing trend.  However, under the RCP 8.5 scenario, drought is expected to rise in frequency, duration, severity, and intensity from 2010–2099, although drought components during the 2010–2039 are predicted to be milder compared with historical conditions.  This study highlights that the estimations for atmospheric evaporative demand would create differences in the prediction of long-term drought trends by different drought indices.  The results of this study can help inform researchers and local policy makers to establish drought management strategies.
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Characterization of salt tolerance and Fusarium wilt resistance of a sweetpotato mutant
ZHANG Huan, ZHANG Qian, WANG Yan-nan, LI Yan, ZHAI Hong, LIU Qing-chang, HE Shao-zhen
2017, 16 (09): 1946-1955.   DOI: 10.1016/S2095-3119(16)61519-8
Abstract720)      PDF in ScienceDirect      
   The variant LM1 was previously obtained using embryogenic cell suspension cultures of sweetpotato variety Lizixiang by gamma-ray induced mutation, and then its characteristics were stably inherited through six clonal generations, thus this mutant was named LM1. In this study, systematic characterization of salt tolerance and Fusarium wilt resistance were performed between Lizixiang and mutant LM1. LM1 exhibited significantly higher salt tolerance compared to Lizixiang. The content of proline and activities of superoxide dismutase (SOD) and photosynthesis were significantly increased, while malonaldehyde (MDA) and H2O2 contents were significantly decreased compared to that of Lizixiang under salt stress. The inoculation test with Fusarium wilt showed that its Fusarium wilt resistance was also improved. The lignin, total phenolic, jasmonic acid (JA) contents and SOD activity were significantly higher, while H2O2 content was significantly lower in LM1 than that in Lizixiang. The expression level of salt stress-responsive and disease resistance-related genes was significantly higher in LM1 than that in Lizixiang under salt and Fusarium wilt stresses, respectively. This result provides a novel and valuable material for improving the salt tolerance and Fusarium wilt resistance of sweetpotato.
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Analysis of drought tolerance and genetic and epigenetic variations in a somatic hybrid between Ipomoea batatas (L.) Lam. and I. triloba L.
JIA Li-cong, ZHAI Hong, HE Shao-zhen, YANG Yu-feng, LIU Qing-chang
2017, 16 (01): 36-46.   DOI: 10.1016/S2095-3119(16)61359-X
Abstract1060)      PDF in ScienceDirect      
The somatic hybrid KT1 was previously obtained from protoplast fusion between sweetpotato (Ipomoea batatas (L.) Lam.) cv. Kokei No. 14 and its wild relative I. triloba L. However, its genetic and epigenetic variations have not been investigated. This study showed that KT1 exhibited significantly higher drought tolerance compared to the cultivated parent Kokei No. 14. The content of proline and activities of superoxide dismutase (SOD) and photosynthesis were significantly increased, while malonaldehyde (MDA) content was significantly decreased compared to Kokei No. 14 under drought stress. KT1 also showed higher expression level of well-known drought stress-responsive genes compared to Kokei No. 14 under drought stress. Amplified fragment length polymorphism (AFLP) and methylation-sensitive amplified polymorphism (MSAP) analyses indicated that KT1 had AFLP and MSAP band patterns consisting of both parent specific bands and changed bands. Further analysis demonstrated that in KT1 the proportions of Kokei No. 14 specific genome components and methylation sites were much greater than those of I. triloba. KT1 had the same chloroplast and mitochondrial genomes as Kokei No. 14. These results will aid in developing the useful genes of I. triloba and understanding the evolution and phylogeny of the cultivated sweetpotato.
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Effects of Lactobacillus plantarum and fibrolytic enzyme on the fermentation quality and in vitro digestibility of total mixed rations silage including rape straw
LIU Qin-hua, LI Xiang-yu, Seare T Desta, ZHANG Jian-guo, SHAO Tao
2016, 15 (9): 2087-2096.   DOI: 10.1016/S2095-3119(15)61233-3
Abstract1722)      PDF in ScienceDirect      
   The aim of the current study was to investigate the effects of a lactic acid bacteria inoculant (Lactobacillus plantarum, LP), fibrolytic enzyme (EN), combination of LP and EN (LP+EN) on fermentation quality, nutritive characteristics and in vitro digestibility of total mixed ration (TMR) silages containing 0, 7.5 and 15.0% (on dry matter basis) of rape (Brassica campestris L.) straw (RS) (denoted as CTMR, LTMR and MTMR, respectively).  After ensiling for 60 days, TMR silages without additives were well preserved, but MTMR had higher pH than CTMR and LTMR. There were no differences in other parameters of fermentation quality, microbial composition, nutrition and in vitro digestibility between CTMR and LTMR except for yeast and mold number and crude protein (CP) content. CTMR and LTMR silage had higher CP content, in vitro neutral detergent fiber digestibility (IVNDFD) and in vitro acid detergent fiber digestibility (IVADFD), lower acid detergent fiber (ADF) content than MTMR silage.  LP and EN decreased pH and increased dry matter (DM) recovery of TMR silages. LP+EN improved the fermentation quality, nutritive characteristics and in vitro digestibility of TMR silages, showed by lower pH, ADF content, higher lactic acid content, in vitro dry matter digestibility (IVDMD) and IVNDFD.  Therefore, It was suggested that TMR silage contained 7.5% RS on a DM basis and treated with LP+EN can be as a useful feed for ruminant.
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A plastidic ATP/ADP transporter gene, IbAATP, increases starch and amylose contents and alters starch structure in transgenic sweetpotato
WANG Yan-nan, LI Yan, ZHANG Huan, ZHAI Hong, LIU Qing-chang, HE Shao-zhen
2016, 15 (9): 1968-1982.   DOI: 10.1016/S2095-3119(15)61192-3
Abstract1320)      PDF in ScienceDirect      
    A plastidic adenosine triphosphate (ATP)/adenosine diphosphate (ADP) transporter (AATP) is responsible for importing ATP from the cytosol into plastids. In dicotyledonous plants, increasing ATP supply is a potential way to facilitate anabolic synthesis in heterotrophic plastids. In this study, a gene encoding the AATP protein, named IbAATP, was isolated from sweetpotato (Ipomoea batatas (L.) Lam.). Transcripts of IbAATP were predominantly detected in the storage roots and leaves and were induced by exogenous sucrose and subjected to circadian rhythm. Transient expression of IbAATP in tobacco and onion epidermal cells revealed the plastidic localization of IbAATP. The overexpression of IbAATP in sweetpotato significantly increased the starch and amylose contents and led to enlarged starch granules. The IbAATP-overexpressing plants showed altered fine structure of amylopectin, which contained an increased proportion of chains with a degree of polymerization (DP) of 10–23 and a reduced number of chains with a DP of 5–9 and 24–40. In addition, starch from the transgenic plants exhibited different pasting properties. The transcript levels of starch biosynthetic genes, including IbAGP, IbGBSSI, IbSSI-IV, and IbSBE, were differentially regulated in the transgenic plants. These results revealed the explicit role of IbAATP in the starch biosynthesis of sweetpotato and indicated that this gene has the potential to be used to improve starch content and quality in sweetpotato and other plants.
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Overexpression of IbMIPS1 gene enhances salt tolerance in transgenic sweetpotato
WANG Fei-bing, ZHAI Hong, AN Yan-yan, SI Zeng-zhi, HE Shao-zhen, LIU Qing-chang
2016, 15 (2): 271-281.   DOI: 10.1016/S2095-3119(14)60973-4
Abstract2023)      PDF in ScienceDirect      
Myo-inositol-1-phosphate synthase (MIPS) is a key rate limiting enzyme in the de novo biosynthesis of myo-inositol in plants. In the present study, the IbMIPS1 gene was introduced into sweetpotato cultivar Xushu 18 and the transgenic plants exhibited significantly enhanced salt tolerance compared with the wild-type (WT). Overexpression of IbMIPS1 up-regulated the salt stress responsive genes, including myo-inositol monophosphatase (MIPP), pyrroline-5-carboxylate synthase (P5CS), pyrroline-5-carboxylate reductase (P5CR), psbA, phosphoribulokinase (PRK), and superoxide dismutase (SOD) genes, under salt stress. Inositol and proline content, SOD and photosynthesis activities were significantly increased, whereas malonaldehyde (MDA) and H2O2 contents were significantly decreased in the transgenic plants. These findings suggest that the IbMIPS1 gene may enhance salt tolerance of sweetpotato by regulating the expression of salt stress responsive genes, increasing the content of inositol and proline and enhancing the activity of photosynthesis.
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Monitoring of winter wheat distribution and phenological phases based on MODIS time-series: A case study in the Yellow River Delta, China
CHU Lin, LIU Qing-sheng, HUANG Chong, LIU Gao-huan
2016, 15 (10): 2403-2416.   DOI: 10.1016/S2095-3119(15)61319-3
Abstract1686)      PDF in ScienceDirect      
    Accurate winter wheat identification and phenology extraction are essential for field management and agricultural policy making. Here, we present mechanisms of winter wheat discrimination and phenological detection in the Yellow River Delta (YRD) region using moderate resolution imaging spectroradiometer (MODIS) time-series data. The normalized difference vegetation index (NDVI) was obtained by calculating the surface reflectance in red and infrared. We used the Savitzky-Golay filter to smooth time series NDVI curves. We adopted a two-step classification to identify winter wheat. The first step was designed to mask out non-vegetation classes, and the second step aimed to identify winter wheat from other vegetation based on its phenological features. We used the double Gaussian model and the maximum curvature method to extract phenology. Due to the characteristics of the time-series profiles for winter wheat, a double Gaussian function method was selected to fit the temporal profile. A maximum curvature method was performed to extract phenological phases. Phenological phases such as the green-up, heading and harvesting phases were detected when the NDVI curvature exhibited local maximum values. The extracted phenological dates then were validated with records of the ground observations. The spatial patterns of phenological phases were investigated. This study concluded that, for winter wheat, the accuracy of classification is 87.07%, and the accuracy of planting acreage is 90.09%. The phenological result was comparable to the ground observation at the municipal level. The average green-up date for the whole region occurred on March 5, the average heading date occurred on May 9, and the average harvesting date occurred on June 5. The spatial distribution of the phenology for winter wheat showed a significant gradual delay from the southwest to the northeast. This study demonstrates the effectiveness of our proposed method for winter wheat classification and phenology detection.
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Molecular diversity and genetic structure of 380 sweetpotato accessions as revealed by SSR markers
YANG Xin-sun, SU Wen-jin, WANG Lian-jun, LEI Jian, CHAI Sha-sha, LIU Qing-chang
2015, 14 (4): 633-641.   DOI: 10.1016/S2095-3119(14)60794-2
Abstract2157)      PDF in ScienceDirect      
Sweetpotato, Ipomoea batatas (L.) Lam., is an important food crop widely cultivated in the world. Evaluation of genetic relationships among diverse cultivars and landraces is necessary for efficient exploitation of genetic diversity in the existing germplasm resources. In the present study, a collection of 380 sweetpotato accessions assembled from different agro-climatic zones of China and other countries were genotyped using 30 SSR primer pairs. Model-based structure analysis separated the germplasm into three populations, P1, P2 and P3, containing 228, 133 and 19 accessions, respectively, which was consistent with the results of phylogenic and principal component analysis (PCA). Analysis of molecular variance (AMOVA) revealed significant genetic differentiation among inferred populations, accounting for 16.47% of the total molecular variance, however, the differences between the regions were not significant, the total variation were due to the differences between the genotypes within the population. Pairwise fixation index (FST) suggested that populations P1 and P3 had the highest differentiation, while populations P1 and P2 had the lowest differentiation. The diversity among populations was wide, which confirmed the genetic distinction of populations. Through comparing model-based structure and domestication-based classification, it was found that the accessions of population P1 mainly belonged to modern cultivars, and the accessions of populations P2 and P3 basically corresponded to landraces, by which we suggest that modern cultivars maybe had experienced a two-step domestication history. Our results illustrated clear genetic relationships among 380 sweetpotato accessions, exhibiting the potential of accelerating the process of future sweetpotato breeding program by molecular marker based parental selection.
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Water consumption in summer maize and winter wheat cropping system based on SEBAL model in Huang-Huai-Hai Plain, China
YANG Jian-ying, MEI Xu-rong, HUO Zhi-guo, YAN Chang-rong, JU Hui, ZHAO Feng-hua, LIU Qin
2015, 14 (10): 2065-2076.   DOI: 10.1016/S2095-3119(14)60951-5
Abstract1918)      PDF in ScienceDirect      
Crop consumptive water use is recognized as a key element to understand regional water management performance. This study documents an attempt to apply a regional evapotranspiration model (SEBAL) and crop information for assessment of regional crop (summer maize and winter wheat) actual evapotranspiration (ETa) in Huang-Huai-Hai (3H) Plain, China. The average seasonal ETa of summer maize and winter wheat were 354.8 and 521.5 mm respectively in 3H Plain. A high-ETa belt of summer maize occurs in piedmont plain, while a low ETa area was found in the hill-irrigable land and dry land area. For winter wheat, a high-ETa area was located in the middle part of 3H Plain, including low plain-hydropenia irrigable land and dry land, hill-irrigable land and dry land, and basin-irrigable land and dry land. Spatial analysis demonstrated a linear relationship between crop ETa, normalized difference vegetation index (NDVI), and the land surface temperature (LST). A stronger relationship between ETa and NDVI was found in the metaphase and last phase than other crop growing phase, as indicated by higher correlation coefficient values. Additionally, higher correlation coefficients were detected between ETa and LST than that between ETa and NDVI, and this significant relationship ran through the entire crop growing season. ETa in the summer maize growing season showed a significant relationship with longitude, while ETa in the winter wheat growing season showed a significant relationship with latitude. The results of this study will serve as baseline information for water resources management of 3H Plain.
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Automated Counting of Rice Planthoppers in Paddy Fields Based on Image Processing
YAO Qing, XIAN Ding-xiang, LIU Qing-jie, YANG Bao-jun, DIAO Guang-qiang , TANG Jian
2014, 13 (8): 1736-1745.   DOI: 10.1016/S2095-3119(14)60799-1
Abstract1463)      PDF in ScienceDirect      
A quantitative survey of rice planthoppers in paddy fields is important to assess the population density and make forecasting decisions. Manual rice planthopper survey methods in paddy fields are time-consuming, fatiguing and tedious. This paper describes a handheld device for easily capturing planthopper images on rice stems and an automatic method for counting rice planthoppers based on image processing. The handheld device consists of a digital camera with WiFi, a smartphone and an extrendable pole. The surveyor can use the smartphone to control the camera, which is fixed on the front of the pole by WiFi, and to photograph planthoppers on rice stems. For the counting of planthoppers on rice stems, we adopt three layers of detection that involve the following: (a) the first layer of detection is an AdaBoost classifier based on Haar features; (b) the second layer of detection is a support vector machine (SVM) classifier based on histogram of oriented gradient (HOG) features; (c) the third layer of detection is the threshold judgment of the three features. We use this method to detect and count whiteback planthoppers (Sogatella furcifera) on rice plant images and achieve an 85.2% detection rate and a 9.6% false detection rate. The method is easy, rapid and accurate for the assessment of the population density of rice planthoppers in paddy fields.
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Cloning and Characterization of a Salt Tolerance-Associated Gene Encoding Trehalose-6-Phosphate Synthase in Sweetpotato
JIANG Tao, ZHAI Hong, WANG Fei-bing, ZHOU Hua-nan, SI Zeng-zhi, HE Shao-zhen , LIU Qing-chang
2014, 13 (8): 1651-1661.   DOI: 10.1016/S2095-3119(13)60534-1
Abstract1466)      PDF in ScienceDirect      
Trehalose plays an important role in metabolic regulation and abiotic stress tolerance in a variety of organisms. In plants, its biosynthesis is catalyzed by two key enzymes: trehalose-6-phosphate synthase (TPS) and trehalose-6-phosphate phosphatase (TPP). In the present study, a TPS gene, named IbTPS, was first isolated from sweetpotato (Ipomoea batatas (L.) Lam.) cv. Lushu 3 by rapid amplification of cDNA ends (RACE). The open reading frame (ORF) contained 2 580 nucleotides encoding 859 amino acids with a molecular weight of 97.433 kDa and an isoelectric point (pI) of 5.7. The deduced amino acid sequence showed high identities with TPS of other plants. Real-time quantitative PCR analysis revealed that the expression level of IbTPS gene was significantly higher in stems of Lushu 3 than in its leaves and roots. Subcellular localization analysis in onion epidermal cells indicated that IbTPS gene was located in the nucleus. Transgenic tobacco (cv. Wisconsin 38) plants over-expressing IbTPS gene exhibited significantly higher salt tolerance compared with the control plant. Trehalose and proline content was found to be significantly more accumulated in transgenic tobacco plants than in the wild-type and several stress tolerance related genes were up-regulated. These results suggest that IbTPS gene may enhance salt tolerance of plants by increasing the amount of treahalose and proline and regulating the expression of stress tolerance related genes.
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Carbon Sequestration in Soil Humic Substances Under Long-Term Fertilization in a Wheat-Maize System from North China
SONG Xiang-yun, LIU Shu-tang, LIU Qing-hua, ZHANG Wen-ju , HU Chun-guang
2014, 13 (3): 562-569.   DOI: 10.1016/S2095-3119(13)60713-3
Abstract2075)      PDF in ScienceDirect      
The changes in humic substances (HS) is fundamental in detecting soil carbon sequestration mechanisms in natural and cultivated environments. Based on a long-term trial, the amounts of water dissolved substances (WSS), humic acid (HA), fulvic acid (FA) and humin (HU) were determined to explore the impact of long-term fertilization on HS. Increases in the amounts of WSS, HA, FA and HU were significant different among the treatments with manure. A significant correlation was found between the increased soil organic carbon (SOC) and HS (R2=0.98, P<0.01). The change in the E4/E6 ratio was significantly correlated with the increased SOC (R2=0.88, P<0.01), HA (R2=0.91, P<0.01), FA (R2=0.91, P<0.01) and HU (R2=0.88, P<0.01). The cluster was mainly divided into two parts as manure fertilization and inorganic fertilization, based on the increases in HA, FA and HU. These results suggest that long term fertilization with manure favours carbon sequestration in HS and is mainly stabilized as HU, while the HA becomes more aliphatic. We conclude that increases in SOC can be linked to changes in the molecular characteristics of HS fractions under long term fertilization.
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Identification of QTLs for Starch Content in Sweetpotato (Ipomoea batatas (L.) Lam.)
YU Xiao-xia, ZHAO Ning, LI Hui, JIE Qin, ZHAI Hong, HE Shao-zhen, LI Qiang , LIU Qing-chang
2014, 13 (2): 310-315.   DOI: 10.1016/S2095-3119(13)60357-3
Abstract1701)      PDF in ScienceDirect      
Sweetpotato (Ipomoea batatas (L.) Lam.) breeding is challenging due to its genetic complexity. In the present study, interval mapping (IM) and multiple quantitative trait locus (QTL) model (MQM) analysis were used to identify QTLs for starch content with a mapping population consisting of 202 F1 individuals of a cross between Xushu 18, a cultivar susceptible to stem nematodes, with high yield and moderate starch, and Xu 781, which is resistant to stem nematodes, has low yield and high starch content. Six QTLs for starch content were mapped on six linkage groups of the Xu 781 map, explaining 9.1-38.8% of the variation. Especially, one of them, DMFN_4, accounted for 38.8% of starch content variation, which is the QTL that explains the highest phenotypic variation detected to date in sweetpotato. All of the six QTLs had a positive effect on the variation of the starch content, which indicated the inheritance derived from the parent Xu 781. Two QTLs for starch content were detected on two linkage groups of the Xushu 18 map, explaining 14.3 and 16.1% of the variation, respectively. They had a negative effect on the variation, indicating the inheritance derived from Xu 781. Seven of eight QTLs were co-localized with a single marker. This is the first report on the development of QTLs co-localized with a single marker in sweetpotato. These QTLs and their co-localized markers may be used in marker-assisted breeding for the starch content of sweetpotato.
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Identification of Behavior of Voluntary Traceability and Analysis of Its Determinants: A Case Study of Hog Slaughtering and Processing Firms in Zhejiang Province, China
ZHOU Jie-hong, YAN Zhen , LIU Qing-yu
2013, 12 (6): 1112-1121.   DOI: 10.1016/S2095-3119(13)60330-5
Abstract1377)      PDF in ScienceDirect      
In recent years, the Chinese government has highlighted the importance of adopting hog safety/quality traceability, and a growing amount of research continues to entice firms to adopt traceability systems. In this study, a survey was conducted on a sample of pig slaughtering and processing firms in Zhejiang, China through personal interviews and emails. The aim of this study was to examine the determinants of firm behavior on the implementation of voluntary traceability systems with more stringent standards and controls than those of the mandatory system in China. The results revealed that motivation based on product quality improvement, capital ability and role perception (business type) had significantly positive relationships with a firm’s voluntary traceability. Other incentives, such as operation improvement, recall risk reduction, reduced occurrence of safety issues, and technical strength were not found to be supportive in our study. This study provides an opportunity to better understand the determinants of firm behavior on voluntary traceability, particularly in light of the fact that some Chinese firms are facing the threat of criminal action for the use of illegal additives and the abuse of Clenbuterol. Policy recommendations on encouraging the implementation of pork safety voluntary traceability by hog slaughtering and processing firms are also discussed.
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Cloning and Functional Analysis of Lycopene ε-Cyclase (IbLCYe) Gene from Sweetpotato, Ipomoea batatas (L.) Lam.
YU Ling, ZHAI Hong, CHEN Wei, HE Shao-zhen , LIU Qing-chang
2013, 12 (5): 773-780.   DOI: 10.1016/S2095-3119(13)60299-3
Abstract1468)      PDF in ScienceDirect      
This paper reported firstly successful cloning of lycopene ε-cyclase (IbLCYe) gene from sweetpotato, Ipomoea batatas (L.) Lam. Using rapid amplification of cDNA ends (RACE), IbLCYe gene was cloned from sweetpotato cv. Nongdafu 14 with high carotenoid content. The 1 805 bp cDNA sequence of IbLCYe gene contained a 1 236 bp open reading frame (ORF) encoding a 411 amino acids polypeptide with a molecular weight of 47 kDa and an isoelectric point (pI) of 6.95. IbLCYe protein contained one potential lycopene ε-cyclase domain and one potential FAD (flavinadenine dinucleotide)/NAD(P) (nicotinamide adenine dinucleotide phosphate)-binding domain, indicating that this protein shares the typical characteristics of LCYe proteins. The gDNA of IbLCYe gene was 4 029 bp and deduced to contain 5 introns and 6 exons. Real-time quantitative PCR analysis revealed that the expression level of IbLCYe gene was significantly higher in the storage roots of Nongdafu 14 than those in the leaves and stems. Transgenic tobacco (cv. Wisconsin 38) expressing IbLCYe gene accumulated significantly more β-carotene compared to the untransformed control plants. These results showed that IbLCYe gene has an important function for the accumulation of carotenoids of sweetpotato.
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