Chen D, Shao Q, Yin L, Younis A, Zheng B. 2019. Polyamine function in plants: Metabolism, regulation on development, and roles in abiotic stress responses. Frontiers in Plant Science, 9, 1945.

Chen X, Chen G, Guo S, Wang Y, Sun J. 2023. SlSAMS1 enhances salt tolerance through regulation DNA methylation of SlGI in tomato. Plant Science, 335, 111808.

Deng S, Ma J, Zhang L, Chen F, Sang Z, Jia Z, Ma L. 2019. De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress. BMC Plant Biology, 19, 321.

Du H Y, Liu D X, Liu G T, Liu H P, Kurtenbach R. 2018. Relationship between polyamines and anaerobic respiration of wheat seedling root under water-logging stress. Russian Journal of Plant Physiology, 65, 874–881.

Fu Y, Gu Q, Dong Q, Zhang Z, Lin C, Hu W, Pan R, Guan Y, Hu J. 2019. Spermidine enhances heat tolerance of rice seeds by modulating endogenous starch and polyamine metabolism. Molecules, 24, 1395.

Gao J, Qian Z, Zhang Y, Zhuang S. 2022. Exogenous spermidine regulates the anaerobic enzyme system through hormone concentrations and related-gene expression in Phyllostachys praecox roots under flooding stress. Plant Physiology and Biochemistry, 186, 182–196.

Ge L F, Chao D Y, Shi M, Zhu M Z, Gao J P, Lin H X. 2008. Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes. Planta, 228, 191–201.

Hayashi K I, Arai K, Aoi Y, Tanaka Y, Hira H, Guo R, Hu Y, Ge C, Zhao Y, Kasahara H, Fukui K. 2021. The main oxidative inactivation pathway of the plant hormone auxin. Nature Communications, 12, 6752.

Hemati Matin N, Jalali M. 2016. The effect of waterlogging on electrochemical properties and soluble nutrients in paddy soils. Paddy and Water Environment, 15, 443–455.

Herzog M, Striker G G, Colmer T D, Pedersen O. 2016. Mechanisms of waterlogging tolerance in wheat – A review of root and shoot physiology. Plant, Cell and Environment, 39, 1068–1086.

Hou Y, Jiang F, Zheng X, Wu Z. 2019. Identification and analysis of oxygen responsive microRNAs in the root of wild tomato (S. habrochaites). BMC Plant Biology, 19, 100.

Jang I C, Oh S J, Seo J S, Choi W B, Song S I, Kim C H, Kim Y S, Seo H S, Choi Y D, Nahm B H, Kim J K. 2003. Expression of a bifunctional fusion of the Escherichia coli genes for trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase in transgenic rice plants increases trehalose accumulation and abiotic stress tolerance without stunting growth. Plant Physiology, 131, 516–524.

Ji M, Wang K, Wang L, Chen S, Li H, Ma C, Wang Y. 2019. Overexpression of a S-adenosylmethionine decarboxylase from sugar beet M14 increased Araidopsis salt tolerance. International Journal of Molecular Sciences, 20, 1990.

Jia Y X, Sun J, Guo S R, Li J, Hu X H, Wang S P. 2010. Effect of root-applied spermidine on growth and respiratory metabolism in roots of cucumber (Cucumis sativus) seedlings under hypoxia. Russian Journal of Plant Physiology, 57, 648–655.

Jiao P, Jin S, Chen N, Wang C, Liu S, Qu J, Guan S, Ma Y. 2022. Improvement of cold tolerance in maize (Zea mays L.) using Agrobacterium-mediated transformation of ZmSAMDC gene. GM Crops & Food, 13, 131–141.

Klecker M, Gasch P, Peisker H, Dormann P, Schlicke H, Grimm B, Mustroph A. 2014. A shoot-specific hypoxic response of Arabidopsis sheds light on the role of the phosphate-responsive transcription factor PHOSPHATE STARVATION RESPONSE1. Plant Physiology, 165, 774–790.

Li H, Peng T, Wang Q, Wu Y, Chang J, Zhang M, Tang G, Li C. 2017. Development of incompletely fused carpels in maize ovary revealed by miRNA, target gene and phytohormone analysis. Frontiers in Plant Science, 8, 463.

Li H W, Zang B S, Deng X W, Wang X P. 2011. Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice. Planta, 234, 1007–1018.

Li J, Hu L, Zhang L, Pan X, Hu X. 2015. Exogenous spermidine is enhancing tomato tolerance to salinity–alkalinity stress by regulating chloroplast antioxidant system and chlorophyll metabolism. BMC Plant Biology, 15, 303.

Liu C, Lan C, Li C, Li C, Huang J. 2023. Exogenous spermidine and calcium alleviate waterlogging stress in cherry tomato at the seedling stage. Scientia Horticulturae, 307, 111504.

Liu Z, Kumari S, Zhang L, Zheng Y, Ware D. 2012. Characterization of miRNAs in response to short-term waterlogging in three inbred lines of Zea mays. PLoS ONE, 7, e39786.

Lou Y, Guan R, Sun M, Han F, He W, Wang H, Song F, Cui X, Zhuge Y. 2018. Spermidine application alleviates salinity damage to antioxidant enzyme activity and gene expression in alfalfa. Ecotoxicology, 27, 1323–1330.

Nakazawa M, Yabe N, Ichikawa T, Yamamoto Y Y, Yoshizumi T, Hasunuma K, Matsui M. 2001. DFL1, an auxin-responsive GH3 gene homologue, negatively regulates shoot cell elongation and lateral root formation, and positively regulates the light response of hypocotyl length. The Plant Journal, 25, 213–221.

Okazaki Y, Saito K. 2014. Roles of lipids as signaling molecules and mitigators during stress response in plants. The Plant Journal, 79, 584–596.

Raman S, Greb T, Peaucelle A, Blein T, Laufs P, Theres K. 2008. Interplay of miR164, CUP-SHAPED COTYLEDON genes and lateral suppressor controls axillary meristem formation in Arabidopsis thaliana. The Plant Journal, 55, 65–76.

Ren B Z, Zhang J W, Dong S T, Liu Peng, Zhao B. 2016. Effects of waterlogging on leaf mesophyll cell ultrastructure and photosynthetic characteristics of summer maize. PLoS ONE, 11, e0161424.

Salah A, Nwafor C C, Han Y, Liu L, Rashid M, Batool M, El-Badri A M, Cao C, Zhan M. 2022. Spermidine and brassinosteroid regulate root anatomical structure, photosynthetic traits and antioxidant defense systems to alleviate waterlogging stress in maize seedlings. South African Journal of Botany, 144, 389–402.

Takase T, Nakazawa M, Ishikawa A, Kawashima M, Ichikawa T, Takahashi N, Shimada H, Manabe K, Matsui M. 2004. ydk1-D, an auxin-responsive GH3 mutant that is involved in hypocotyl and root elongation. The Plant Journal, 37, 471–483.

Tewari S. 2018. Flooding stress in plants and approaches to overcome. In: Plant Metabolites and Regulation under Environmental Stress. Elsevier Science & Technolog, USA.

Wang X, Wang Q, Zhang M, Zhao Y, Dong P, Zhao Y, Li H, Jia X, An P, Tang Y, Li C. 2022. Foliar application of spermidine alleviates waterlogging-induced damages to maize seedlings by enhancing antioxidative capacity, modulating polyamines and ethylene biosynthesis. Life, 12, 1921.

Wen X P, Ban Y, Inoue H, Matsuda N, Kita M, Moriguchi T. 2011. Antisense inhibition of a spermidine synthase gene highlights the role of polyamines for stress alleviation in pear shoots subjected to salinity and cadmium. Environmental and Experimental Botany, 72, 157–166.

Xie L J, Chen Q F, Chen M X, Yu L J, Huang L, Chen L, Wang F Z, Xia F N, Zhu T R, Wu J X, Yin J, Liao B, Shi J, Zhang J H, Aharoni A, Yao N, Shu W, Xiao S. 2015. Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis. PLoS Genetics, 11, e1005143.

Xu Z Y, Ye L Z, Shen Q F, Zhang G P. 2024. Advances in studies on waterlogging tolerance in plants. Journal of Integrative Agriculture, 23, 2877–2897.

Yang C, Du P H, Shang Y W, Ji J H, Tan L Q, Zhang X, Xu J Z, Liang B W. 2024. Melatonin and dopamine alleviate waterlogging stress in apples by recruiting beneficial endophytes to enhance the physiological resilience. Journal of Integrative Agriculture, 23, 2270–2291.

Yiu J C, Liu C W, Fang D Y T, Lai Y S. 2009. Waterlogging tolerance of Welsh onion (Allium fistulosum L.) enhanced by exogenous spermidine and spermine. Plant Physiology and Biochemistry, 47, 710–716.

Zhang Q, Liu X, Zhang Z, Liu N, Li D, Hu L. 2019. Melatonin improved waterlogging tolerance in alfalfa (Medicago sativa) by reprogramming polyamine and ethylene metabolism. Frontiers in Plant Science, 10, 44.