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Special Issue:
农业生态环境-土壤微生物合辑Agro-ecosystem & Environment—Soil microbe
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| Microbial community dynamics during composting of animal manures contaminated with arsenic, copper, and oxytetracycline |
| Ebrahim SHEHATA1, 2, CHENG Deng-miao3, MA Qian-qian1, LI Yan-li1, LIU Yuan-wang1, FENG Yao1, JI Zhen-yu1, LI Zhao-jun1 |
1 Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture and Rural Affairs/China–New Zealand Joint Laboratory for Soil Molecular Ecology, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, P.R.China
2 Department of Natural Resources and Agricultural Engineering, College of Agriculture, Damanhour University, Damanhour 22511, Egypt
3 Research Center for Eco-Environmental Engineering, Dongguan University of Technology, Dongguan 523808, P.R.China |
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Abstract Effects of the heavy metal copper (Cu), the metalloid arsenic (As), and the antibiotic oxytetracycline (OTC) on bacterial community structure and diversity during cow and pig manure composting were investigated. Eight treatments were applied, four to each manure type, namely cow manure with: (1) no additives (control), (2) addition of heavy metal and metalloid, (3) addition of OTC and (4) addition of OTC with heavy metal and metalloid; and pig manure with: (5) no additives (control), (6) addition of heavy metal and metalloid, (7) addition of OTC and (8) addition of OTC with heavy metal and metalloid. After 35 days of composting, according to the alpha diversity indices, the combination treatment (OTC with heavy metal and metalloid) in pig manure was less harmful to microbial diversity than the control or heavy metal and metalloid treatments. In cow manure, the treatment with heavy metal and metalloid was the most harmful to the microbial community, followed by the combination and OTC treatments. The OTC and combination treatments had negative effects on the relative abundance of microbes in cow manure composts. The dominant phyla in both manure composts included Actinobacteria, Bacteroidetes, Firmicutes, and Proteobacteria. The microbial diversity relative abundance transformation was dependent on the composting time. Redundancy analysis (RDA) revealed that environmental parameters had the most influence on the bacterial communities. In conclusion, the composting process is the most sustainable technology for reducing heavy metal and metalloid impacts and antibiotic contamination in cow and pig manure. The physicochemical property variations in the manures had a significant effect on the microbial community during the composting process. This study provides an improved understanding of bacterial community composition and its changes during the composting process.
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Received: 03 March 2020
Accepted:
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| Fund: The work was supported financially by the National Key Technology R&D Program of China (2018YFD0500206), the National Natural Science Foundation of China (31572209, 31772395 and 31972943), and the Foundation for Safety of Agricultural Products by Ministry of Agriculture and Rural Affairs, China (GJFP2019033). |
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Corresponding Authors:
Correspondence LI Zhao-jun, Tel: +86-10-82108657, E-mail: lizhaojun@caas.cn
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Cite this article:
Ebrahim SHEHATA, CHENG Deng-miao, MA Qian-qian, LI Yan-li, LIU Yuan-wang, FENG Yao, JI Zhen-yu, LI Zhao-jun .
2021.
Microbial community dynamics during composting of animal manures contaminated with arsenic, copper, and oxytetracycline. Journal of Integrative Agriculture, 20(6): 1649-1659.
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Amir S, Hafidi M, Merlina G, Revel J C. 2005. Sequential extraction of heavy metals during composting of sewage sludge. Chemospher, 59, 801–810.
Aravena-Román M, Spröer C, Siering C, Inglis T, Schumann P, Yassin A F. 2012. Corynebacterium aquatimens sp. nov., a lipophilic Corynebacterium isolated from blood cultures of a patient with bacteremia. Systematic and Applied Microbiology, 35, 380–384.
Arikan O A, Mulbry W, Rice C. 2009. Management of antibiotic residues from agricultural sources: Use of composting to reduce chlortetracycline residues in beef manure from treated animals. Journal of Hazardous Materials, 164, 483–489.
Bates S T, Clemente J C, Flores G E, Walters W A, Parfrey L W, Knight R, Fierer N. 2013. Global biogeography of highly diverse protistan communities in soil. Multidisciplinary Journal of Microbial Ecology, 7, 652.
Belyaeva O N, Haynes R J. 2012. Comparison of the effects of conventional organic amendments and biochar on the chemical, physical and microbial properties of coal fly ash as a plant growth medium. Environmental Earth Sciences, 66, 1987–1997.
Bremner J M. 1965. Total nitrogen 1. Methods of soil analysis. Part 2. In: Chemical and Microbiological Properties. American Society of Agronomy, Soil Science Society of America, Madison, USA. pp. 1149–1178.
Castaldi P, Santona L, Melis P. 2006. Evolution of heavy metals mobility during municipal solid waste composting. Fresenius Environmental Bulletin, 15, 1133–1140.
Chai R, Huang L, Li L, Gielen G, Wang H, Zhang Y. 2016. Degradation of tetracyclines in pig manure by composting with rice straw. International Journal of Environmental Research and Public Health, 13, 254.
Chen Y, Chang S K C, Chen J, Zhang Q, Yu H. 2018. Characterization of microbial community succession during vermicomposting of medicinal herbal residues. Bioresource Technology, 249, 542–549.
Chodak M, Pietrzykowski M, Sroka K. 2015. Physiological profiles of microbial communities in mine soils afforested with different tree species. Ecological Engineering, 81, 462–470.
Ciavatta C, Govi M, Pasotti L, Sequi P. 1993. Changes in organic matter during stabilization of compost from municipal solid wastes. Bioresource Technology, 43, 141–145.
De Gannes V, Eudoxie G, Hickey W J. 2013. Prokaryotic successions and diversity in composts as revealed by 454-pyrosequencing. Bioresource Technology, 133, 573–580.
Dees P M, Ghiorse W C. 2001. Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiology Ecology, 35, 207–216.
Dewis J, Freitas P. 1970. Physical and chemical methods of soil and water analysis. In: Food Agriculture Organization of the United Nations. Rome, Italy.
Edgar R C, Haas B J, Clemente J C, Quince C, Knight R. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics, 27, 2194–2200.
Edgar R C. 2013. UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996.
Egert M, Marhan S, Wagner B, Scheu S, Friedrich M W. 2004. Molecular profiling of 16S rRNA genes reveals diet-related differences of microbial communities in soil, gut, and casts of Lumbricus terrestris L. (Oligochaeta: Lumbricidae). FEMS Microbiology Ecology, 48, 187–197.
Franke-Whittle I H, Confalonieri A, Insam H, Schlegelmilch M, Körner I. 2014. Changes in the microbial communities during co-composting of digestates. Waste Management, 34, 632–641.
Gul S, Naz A, Fareed I, Khan A, Irshad M. 2015. Speciation of heavy metals during co-composting of livestock manure. Polish Journal of Chemical Technology, 17, 19–23.
Guo R, Li G, Jiang T, Schuchardt F, Chen T, Zhao Y, Shen Y. 2012. Effect of aeration rate, C/N ratio and moisture content on the stability and maturity of compost. Bioresource Technology, 112, 171–178.
Hsu J H, Lo S L. 2001. Effect of composting on characterization and leaching of copper, manganese, and zinc from swine manure. Environmental Pollution, 114, 119–127.
Irshad M, Gul S, Egrinya Eneji A, Anwar Z, Ashraf M. 2014. Extraction of heavy metals from manure and their bioavailability to spinach (Spinacia oleracea L.) after composting. Journal of Plant Nutrition, 37, 1661–1675.
Jiang C, Wu Y, Cheng Y. 2017. Bacterial and fungal communities and contribution of physicochemical factors during cattle farm waste composting. MicrobiologyOpen, 6, e00518.
Karadag D, Özkaya B, Ölmez E, Nissilä M E, Çakmakç? M, Y?ld?z ?, Puhakka J A. 2013. Profiling of bacterial community in a full-scale aerobic composting plant. International Biodeterioration & Biodegradation, 77, 85–90.
Kemper N. 2008. Veterinary antibiotics in the aquatic and terrestrial environment. Ecological Indicators, 8, 1–13.
Kim B R, Shin J, Guevarra R, Lee J H, Kim D W, Seol K H, Lee J H, Kim H B, Isaacson R. 2017. Deciphering diversity indices for a better understanding of microbial communities. Journal of Microbiology and Biotechnology, 27, 2089–2093.
Kim K R, Owens G, Ok Y S, Park W K, Lee D B, Kwon S I. 2012. Decline in extractable antibiotics in manure-based composts during composting. Waste Management, 32, 110–116.
Kumar K, Gupta S C, Chander Y, Singh A K. 2005. Antibiotic use in agriculture and its impact on the terrestrial environment. Advances in Agronomy, 87, 1–54.
Lazcano C, Gómez-Brandón M, Domínguez J. 2008. Comparison of the effectiveness of composting and vermicomposting for the biological stabilization of cattle manure. Chemosphere, 72, 1013–1019.
Lemos L N, Fulthorpe R R, Triplett E W, Roesch L F W. 2011. Rethinking microbial diversity analysis in the high throughput sequencing era. Journal of Microbiological Methods, 86, 42–51.
Li L, Huang L, Chung R, Kof K, Zhang Y. 2010. Sorption and dissipation of tetracyclines in soils and compost. Pedosphere, 20, 807–816.
Li Z J, Qi W N, Feng Y, Liu Y W, Shehata E, Long J. 2019. Degradation mechanisms of oxytetracycline in the environment. Journal of Integrative Agriculture, 18, 1953–1960.
López-González J A, del Carmen Vargas-García M, Jose Lopez M J, Suárez-Estrella F, del Mar Jurado M, Moreno J. 2015. Biodiversity and succession of mycobiota associated to agricultural lignocellulosic waste-based composting. Bioresource Technology, 187, 305–313.
Lu K, Yang X, Gielen G, Bolan N, Ok YS, Niazi N K, Xu S, Yuan G, Chen X, Zhang X. 2017. Effect of bamboo and rice straw biochars on the mobility and redistribution of heavy metals (Cd, Cu, Pb and Zn) in contaminated soil. Journal of Environmental Management, 186, 285–292.
Meng Q, Xu X, Zhang W, Men M, Xu B, Deng L, Bello A, Jiang X, Sheng S, Wu X. 2019. Bacterial community succession in dairy manure composting with a static composting technique. Canadian Journal of Microbiology, 65, 436–449.
Neher D A, Weicht T R, Bates S T, Leff J W, Fierer N. 2013. Changes in bacterial and fungal communities across compost recipes, preparation methods, and composting times. PLoS ONE, 8, e79512.
Ogino A, Koshikawa H, Nakahara T, Uchiyama H. 2001. Succession of microbial communities during a biostimulation process as evaluated by DGGE and clone library analyses. Journal of Applied Microbiology, 91, 625–635.
Partanen P, Hultman J, Paulin L, Auvinen P, Romantschuk M. 2010. Bacterial diversity at different stages of the composting process. BMC Microbiology, 10, 94.
Paz-Ferreiro J, Lu H, Fu S, Méndez A, Gascó G. 2013. Use of phytoremediation and biochar to remediate heavy metal polluted soils: a review. Solid Earth Discussions, 5, 65–75.
Qian X, Sun W, Gu J, Wang X, Zhang Y, Duan M, Li H, Zhang R. 2016. Reducing antibiotic resistance genes, integrons, and pathogens in dairy manure by continuous thermophilic composting. Bioresource Technology, 220, 425–432.
Ren G, Xu X, Qu J, Zhu L, Wang T. 2016. Evaluation of microbial population dynamics in the co-composting of cow manure and rice straw using high throughput sequencing analysis. World Journal of Microbiology and Biotechnology, 32, 101.
Ryckeboer J, Mergaert J, Vaes K, Klammer S, De Clercq D, Coosemans J, Insam H, Swings J. 2003. A survey of bacteria and fungi occurring during composting and self-heating processes. Annals of Microbiology, 53, 349–410.
Sarmah A K, Meyer M T, Boxall A B A. 2006. A global perspective on the use, sales, exposure pathways, occurrence, fate and effects of veterinary antibiotics (VAs) in the environment. Chemosphere, 65, 725–759.
Singh J, Kalamdhad A S. 2013. Bioavailability and leachability of heavy metals during water hyacinth composting. Chemical Speciation and Bioavailability, 25, 1–14.
Sposito G, LeVesque C S, LeClaire J P, Chang A C. 1983. Trace metal chemistry in arid-zone field soils amended with sewage sludge: III. Effect of time on the extraction of trace metals. Soil Science Society of America Journal, 47, 898–902.
Storteboom H N, Kim S C, Doesken K C, Carlson K H, Davis J G, Pruden A. 2007. Response of antibiotics and resistance genes to high-intensity and low-intensity manure management. Journal of Environmental Quality, 36, 1695–1703.
Sun F, Fan L, Xie G. 2016. Effect of copper on the performance and bacterial communities of activated sludge using Illumina MiSeq platforms. Chemosphere, 156, 212–219.
Taibi Z, Saoudi B, Boudelaa M, Trigui H, Belghith H, Gargouri A, Ladjama A. 2012. Purification and biochemical characterization of a highly thermostable xylanase from Actinomadura sp. strain Cpt20 isolated from poultry compost. Applied Biochemistry and Biotechnology, 166, 663–679.
Teixeira L M, Merquior V L C. 2014. The family moraxellaceae. In: The Prokaryotes: Gammaproteobacteria. Springer, Berlin, Heidelberg. pp. 443–476.
Wang H, Dong Y, Yang Y, Toor G S, Zhang X. 2013. Changes in heavy metal contents in animal feeds and manures in an intensive animal production region of China. Journal of Environmental Sciences, 25, 2435–2442.
Wang R, Zhang J, Sui Q, Wan H, Tong J, Chen M, Wei Y, Wei D. 2016. Effect of red mud addition on tetracycline and copper resistance genes and microbial community during the full scale swine manure composting. Bioresource Technology, 216, 1049–1057.
Wang X, Chen L, Xia S, Zhao J. 2008. Changes of Cu, Zn, and Ni chemical speciation in sewage sludge co-composted with sodium sulfide and lime. Journal of Environmental Sciences, 220, 156–160.
Wang X, Cui H, Shi J, Zhao X, Zhao Y, Wei Z. 2015. Relationship between bacterial diversity and environmental parameters during composting of different raw materials. Bioresource Technology, 198, 395–402.
Wang Y, Bu C, Kang Q, Ahmad H A, Zhang J, Gao B, Ni S. 2017. Autoclaved sludge as the ideal seed to culture anammox bacteria: Reactor performance and microbial community diversity. Bioresource Technology, 244, 391–399.
Wei Y, Wu D, Wei D, Zhao Y, Wu J, Xie X, Wei Z. 2019. Improved lignocellulose-degrading performance during straw composting from diverse sources with actinomycetes inoculation by regulating the key enzyme activities. Bioresource Technology, 271, 66–74.
Yang Y, Huang W, Huang W. 2019. Antibiotic inhibition on anaerobic digestion of animal manure and controlling strategies: a short review. Clean, 47, 1700653.
Ye S, Zeng G, Wu H, Liang J, Zhang C, Dai J, Yu J. 2019. The effects of activated biochar addition on remediation efficiency of co-composting with contaminated wetland soil. Resources, Conservation and Recycling, 140, 278–285.
Yin Y, Gu J, Wang X, Song W, Zhang K, Sun W, Zhang X, Zhang Y, Li H. 2017. Effects of copper addition on copper resistance, antibiotic resistance genes, and intl1 during swine manure composting. Frontiers in Microbiology, 8, 344.
Yin Y, Gu J, Wang X, Tuo X, Zhang K, Zhang L, Guo A, Zhang X. 2018. Effects of copper on the composition and diversity of microbial communities in laboratory-scale swine manure composting. Canadian Journal of Microbiology, 64, 409–419.
Zakhama S, Dhaouadi H, M’henni F. 2011. Nonlinear modelisation of heavy metal removal from aqueous solution using Ulva lactuca algae. Bioresource Technology, 102, 786–796.
Zang X, Liu M, Wang H, Fan Y, Zhang H, Liu J, Xing E, Xu X, Li H. 2017. The distribution of active β-glucosidase-producing microbial communities in composting. Canadian Journal of Microbiology, 63, 998–1008.
Zhang J, Sui Q, Li K, Chen M, Tong J, Qi L, Wei Y. 2016. Influence of natural zeolite and nitrification inhibitor on organics degradation and nitrogen transformation during sludge composting. Environmental Science and Pollution Research, 23, 1324–1334.
Zhang Z, Zhao J, Yu C, Dong S, Zhang D, Yu R, Wang C, Liu Y. 2015. Evaluation of aerobic co-composting of penicillin fermentation fungi residue with pig manure on penicillin degradation, microbial population dynamics and composting maturity. Bioresource Technology, 198, 403–409.
Zhou C, Liu Z, Huang Z L, Dong M, Yu X L, Ning P. 2015. A new strategy for co-composting dairy manure with rice straw: Addition of different inocula at three stages of composting. Waste Management, 40, 38–43.
Zorpas A A, Inglezakis V J, Loizidou M. 2008. Heavy metals fractionation before, during, and after composting of sewage sludge with natural zeolite. Waste Management, 28, 2054–2060. |
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