Abdurakhmonov I Y, Kohel R J, Yu J Z, Pepper A E, Abdullaev A A, Kushanov F N, Salakhutdinov I B, Burie Z T, Saha S, Scheffler B E, Jenkins J N, Abdukarimov A. 2008. Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm. Genomics, 92, 478–487.

Abdurakhmonov I Y, Sah S, Jenkins J N, Buriev Z T, Shermatov S E, Scheffler B E, Pepper A E, Yu J Z, Kohel R J, Abdukarimov A. 2009. Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm. Genetica, 136, 401–417.

Badri J, Lakshmidev G, JaiVidhya L R K, Prasad M S, Laha G S, Lakshmi V J, Isetty S R, Padmashree R, Balakrishna D, Varanasi Y V P, Jukanti A K, Singh U M, Singh V K, Kumar A, Ram T, Rao L V S, Sundara R M. 2022. Multiparent-derived, marker-assisted introgression lines of the elite Indian rice cultivar, ‘Krishna Hamsa’ show rresistance against bacterial blight and blast and tolerance to drought. Plants-Basel, 11, 622.

Barmukh R, Roorkiwal M, Dixit G P, Bajaj P, Kholova J, Smith M R, Chitikinen A, Bharadwaj C, Sreeman S M, Rathore A, Tripathi S, Yasin M, Vijayakumar A G, Sagurthi S R, Siddique K H M, Varshne R K. 2022. Characterization of ‘QTL-hotspot’ introgression lines reveals physiological mechanisms and candidate genes associated with drought adaptation in chickpea. Journal of Experimental Botany, 73, 7255–7272.

Bolger A, Scossa F, Bolger M E, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich E A, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos S A, et al. 2014. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics, 46, 1034–1038.

Brar D S, Khush G S. 1997. Alien introgression in rice. Plant Molecular Biology, 35, 35–47.

Brubaker C L, Paterson A H, Wendel J F. 1999. Comparative genetic mapping of allotetraploid cotton and its diploid progenitors. Genome, 42, 184–203.

Calafiore R, Aliberti A, Ruggieri V, Olivieri F, Rigano M M, Barone A. 2019. Phenotypic and molecular selection of a superior Solanum pennellii introgression sub-line suitable for improving quality traits of cultivated tomatoes. Frontiers in Plant Science, 10, 190.

Chen C, Chen H, Zhang Y, Thomas H R, Frank M H, He Y, Xia R. 2020. TBtools: An integrative toolkit developed for interactive analyses of big biological data. Molecular Plant, 13, 1194–1202.

Chen Z J, Scheffler B E, Dennis E, Triplett B A, Zhang T, Guo W, Che X, Stell D M, Rabinowic P D, Town C D, Arioli T, Brubaker C, Cantrell R G, Lacape J M, Ulloa M, Chee P, Gingle A R, Haigler C H, Percy R, Saha S, et al. 2007. Toward sequencing cotton (Gossypium) genomes. Plant Physiology, 145, 1303–1310.

Chen Z J, Sreedasyam A, Ando A, Song Q, De Santiago L M, Hulse-Kemp A M, Ding M, Ye W, Kirkbride R C, Jenkins J, Plott C, Lovell J, Lin Y M, Vaughn R, Liu B, Simpson S, Scheffler B E, Wen L, Saski C A, Grover C E, et al. 2020. Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nature Genetics, 52, 525–533.

Cullingham C I, Miller J M, Peery R M, Dupuis J R, Malenfant R M, Gorrell J C, Janes J K. 2020. Confidently identifying the correct K value using the ΔK method: When does K=2? Molecular Ecology, 29, 862–869.

Dixit S, Singh U M, Singh A K, Alam S, Venkateshwarlu C, Nachimuthu V V, Yadav S, Abbai R, Selvaraj R, Devi M N, Ramayya P J, Badri J, Ram T, Lakshmi J, Lakshmidevi G, Lrk J V, Padmakumari A P, Laha G S, Prasad M S, Seetalam M, et al. 2020. Marker assisted forward breeding to combine multiple biotic-abiotic stress resistance/tolerance in rice. Rice, 13, 15.

Du X, Huang G, He S, Yang Z, Sun G, Ma X, Li N, Zhang X, Sun J, Liu M, Jia Y, Pan Z, Gong W, Liu Z, Zhu H, Ma L, Liu F, Yang D, Wang F, Fan W, et al. 2018. Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits. Nature Genetics, 50, 796–802.

Eshed Y, Abu-Abied M, Saranga Y, Zamir D. 1992. Lycopersicon esculentum lines containing small overlapping introgressions from L. pennellii. Theoretical and Applied Genetics, 83, 1027–1034.

Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software structure: A simulation study. Molecular Ecology, 14, 2611–2620.

Fang L, Gong H, Hu Y, Liu C, Zhou B, Huang T, Wang Y, Chen S, Fang D D, Du X, Chen H, Chen J, Wang S, Wang Q, Wan Q, Liu B, Pan M, Chang L, Wu H, Mei G, et al. 2017a. Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons. Genome Biological, 18, 33.

Fang L, Wang Q, Hu Y, Jia Y, Chen J, Liu B, Zhang Z, Guan X, Chen S, Zhou B, Mei G, Sun J, Pan Z, He S, Xiao S, Shi W, Gong W, Liu J, Ma J, Cai C, et al. 2017b. Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits. Nature Genetics, 49, 1089–1098.

Feng L, Chen Y, Xu M, Yang Y, Yue H, Su Q, Zhou C, Feng G, Ai N, Wang N, Zhou, B. 2021. Genome-wide introgression and quantitative trait locus mapping reveals the potential of Asian cotton (Gossypium arboreum) in improving upland cotton (Gossypium hirsutum). Frontiers in Plant Science, 12, 719371.

Feng Y, Yuan X, Wan Y, Yang Y, Zhang M, Yu H, Xu Q, Wang S, Niu X, Wei X. 2021. Validation of a QTL for grain size and weight using an introgression lline from a cross between Oryza sativa and Oryza minuta. Rice, 14, 43.

Gaikwad K B, Sing N, Bhatia D, Kaur R, Bains N S, Bharaj T S, Singh K. 2014. Yield-enhancing heterotic QTL transferred from wild species to cultivated rice Oryza sativa L. PLoS ONE, 9, e96939.

Grover C E, Arick M A, Thrash A, Conover J L, Sanders W S, Peterson D G, Frelichowski J E, Scheffler J A, Scheffler B E, Wendel J F. 2019. Insights into the evolution of the New World diploid cottons (Gossypium, Subgenus Houzingenia) based on genome sequencing. Genome Biology and Evolution, 11, 53–71.

Hirabayashi H, Sasaki K, Kambe T, Gannaban R B, Miras M A, Mendioro M S, Simon E V, Lumanglas P D, Fujita D, Takemoto-Kuno Y, Takeuchi Y, Kaji R, Kondo M, Kobayashi N, Ogawa T, Ando I, Jagadish K S V, Ishimaru T. 2014. qEMF3, a novel QTL for the early-morning flowering trait from wild rice, Oryza officinalis, to mitigate heat stress damage at flowering in rice, O. sativa. Journal of Experimental Botany, 66, 1227–1236.

Hu Y, Chen J, Fang L, Zhang Z, Ma W, Niu Y, Ju L, Deng J, Zhao T, Lian J, Baruch K, Fang D, Liu X, Ruan Y L, Rahman M U, Han J, Wang K, Wang Q, Wu H, Mei G, et al. 2019. Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton. Nature Genetics, 51, 739–748.

Huang G, Huang J Q, Chen X Y, Zhu Y X. 2021. Recent advances and future perspectives in cotton research. Annual Review of Plant Biology, 72, 437–462.

Huang G, Wu Z, Percy R G, Bai M, Li Y, Frelichowski J E, Hu J, Wang K, Yu J Z, Zhu Y. 2020. Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution. Nature Genetics, 52, 516–524.

Ijaz B, Zhao N, Kong J, Hua J. 2019. Fiber quality iimprovement in upland cotton (Gossypium hirsutum L.): Quantitative trait loci mapping and marker assisted selection application. Frontiers in Plant Science, 10, 1585.

Jiang C, Wrigh R J, El-ZikK M, Paterso A H. 1998. Polyploid formation created unique avenues for response to selection in Gossypium (cotton). Proceedings of the National Academy of Sciences of the United States of America, 95, 4419–4424.

Keerio A A, Shen C, Nie Y, Ahmed M M, Zhang X, Lin Z. 2018. QTL mapping for fiber quality and yield traits ased on introgression lines derived from Gossypium hirsutum × G tomentosum. International Journal of Molecular Sciences, 19, 243.

Kubond B A, St Clair D A. 2023. Bin mapping of water stress tolerance-related, fruit quality, and horticultural traits in tomato introgression lines derived from wild Solanum habrochaites. Crop Science, 63, 568–584.

Kumar P, Nimba S, Budhlakoti N, Singh V, Sangwa R S. 2022. Genetic diversity and population structure analysis for morphological traits in upland cotton (Gossypium hirsutum L.). Journal of Applied Genetics, 63, 87–101.

Lee S B, Kaittanis C, Jansen R K, Hostetle J B, Tallon L J, Tow C D, Daniell H. 2006. The complete chloroplast genome sequence of Gossypium hirsutum: Organization and phylogenetic relationships to other angiosperms. BMC Genomics, 7, 61.

Li F, Fan G, Lu C, Xiao G, Zou C, Kohel R J, Ma Z, Shang H, Ma X, Wu J, Liang X, Huan G, Percy R G, Liu K, Yan W, Chen W, Du X, Shi C, Yuan Y, Ye W, et al. 2015. Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution. Nature Biotechnology, 33, 524–530.

Li H H, Ye G Y, Wang J K. 2007. A modified algorithm for the improvement of composite interval mapping. Genetics, 175, 361–374.

Li J, Yua D, Wang P, Wang Q, Sun M, Liu Z, Si H, Xu Z, Ma Y, Zhang B, Pei L, Tu L, Zhu L, Chen L L, Lindsey K, Zhang X, Jin S, Wang M. 2021. Cotton pan-genome retrieves the lost sequences and genes during domestication and selection. Genome Biology, 22, 119.

Ma Z, He S, Wang X, Sun J, Zhang Y, Zhang G, Wu L, Li Z, Liu Z, Sun G, Yan Y, Jia Y, Yang J, Pan Z, Gu Q, Li X, Sun Z, Dai P, Liu Z, Gong W, et al. 2018. Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield. Nature Genetics, 50, 803–813.

Ma Z, Zhang Y, Wu L, Zhang G, Sun Z, Li Z, Jiang Y, Ke H, Chen B, Liu Z, Gu Q, Wang Z, Wang G, Yang J, Wu J, Yan Y, Meng C, Li L, Li X, Mo S, et al. 2021. High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement. Nature Genetics, 53, 1385–1391.

Mccouch S, Cho Y, Yano M, Paul E, Blinstrub M, Morishima H, Mccouch S, Cho Y, Paul E, Morishima H. 1997. Report on QTL nomenclature. Rice Genetics Newsletter, 14, 11–13.

McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePrist M A. 2010. The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20, 1297–1303.

Meng L, Li H, Zhang L, Wang J. 2015. QTL IciMapping: Integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations. The Crop Journal, 3, 269–283.

Mir Z A, Chandra T, Saharan A, Budhlakoti N, Mishra D C, Saharan M S, Mir R R, Singh A K, Sharma S, Vikas V K, Kuma S. 2023. Recent advances on genome-wide association studies (GWAS) and genomic selection (GS); prospects for Fusarium head blight research in Durum wheat. Molecular Biology Reports, 50, 3885–3901.

Muellner A E, Buerstmayr M, Eshonkulov B, Hole D, Michel S, Hagenguth J F, Pachler B, Pernold R, Buerstmayr H. 2021. Comparative mapping and validation of multiple disease resistance QTL for simultaneously controlling common and dwarf bunt in bread wheat. Theoretical and Applied Genetics, 134, 489–503.

Naz A A, Arifuzzaman M, Muzammil S, Pillen K, Léo J. 2014. Wild barley introgression lines revealed novel QTL alleles for root and related shoot traits in the cultivated barley (Hordeum vulgare L.). BMC Genomic, 15, 107.

Nzuki I, Katari M S, Bredeson J V, Masumba E, Kapinga F, Salum K, Mkamilo G S, Shah T, Lyons J B, Rokhsar D S, Rounsley S, Myburg A A, Ferguson M E. 2017. QTL mapping for pest and disease resistance in Cassava and coincidence of Some QTL with introgression regions derived from Manihot glaziovii. Frontiers in Plant Science, 8, 1168.

Pan W, Han X, Huang S, Yu J, Zhao Y, Qu K, Zhang Z, Yin Z, Qi H, Yu G, Zhang Y, Xin D, Zhu R, Liu C, Wu X, Jiang H, Hu Z, Zuo Y, Chen Q, Qi Z. 2022. Identification of candidate genes related to soluble sugar contents in soybean seeds using multiple genetic analyses. Journal of Integrative Agriculture, 21, 1886–1902.

Paterson A H, Brubaker C, Wendel J. 1993. A rapid method for extraction of cotton (Gossypium Spp.) genomic DNA suitable for RFLP or PCR analysis. Plant Molecular Biology Reporter, 11, 122–127.

Paterson A H, Wendel J F, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker K C, Shu S, Udall J, Yoo M J, Byers R, Chen W, Doron-Faigenboim A, Duke M V, Gong L, Grimwood J, Grover C, Grupp K, Hu G, et al. 2012. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 492, 423–427.

Perkin L C, Bell A, Hinze L L, Suh C P C, Arick M A, Peterson D G, Udall J A. 2021. Genome assembly of two nematode-resistant cotton lines (Gossypium hirsutum L.). G3-Genes Genomes Genetics, 11, 6.

Rabieyan E, Bihamta M R, Moghaddam M E, Mohammadi V, Alipour H. 2022. Genome-wide association mapping for wheat morphometric seed traits in Iranian landraces and cultivars under rain-fed and well-watered conditions. Scientific Reports, 12, 17839.

Ruan Y L. 2013. Boosting seed development as a new strategy to increase cotton fiber yield and quality. Journal of Integrative Plant Biology, 55, 572–575.

Said J I, Lin Z, Zhang X, Song M, Zhang J. 2013. A comprehensive meta QTL analysis for fiber quality, yield, yield related and morphological traits, drought tolerance, and disease resistance in tetraploid cotton. BMC Genomics, 14, 776.

Said J I, Song M, Wang H, Lin Z, Zhang X, Fang D D, Zhang J. 2015. A comparative meta-analysis of QTL between intraspecific Gossypium hirsutum and interspecific G. hirsutum × G. barbadense populations. Molecular Genetics and Genomics, 290, 1003–1025.

Sanchez P L, Wing R A, Brar D S. 2013. The wild relative of rice: Genomes and genomics. In: Zhang Q, Wing R, eds., Genetics and Genomics of Rice in Plant Genetics and Genomics: Crops and Models. Springe, New York, NY. pp. 9–25.

Sato K, Takeda K. 2009. An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines. Theoretical and Applied Genetics, 119, 613–619.

Senchina D S, Alvarez I, Cronn R C, Liu B, Rong J, Noyes R D, Paterson A H, Wing R A, Wilkins T A, Wendel J F. 2003. Rate variation among nuclear genes and the age of polyploidy in Gossypium. Molecular Biology and Evolution, 20, 633–643.

Shao Y, Shen Y, He F, Li Z. 2022. QTL identification for stem fiber, strength and rot resistance in a DH population from an alien introgression of Brassica napus. Plants-Basel, 11, 373.

Sharma S, Jaba J, Rao P J, Prasad S, Gopal N, Sharma H C, Kilian B. 2022. Reaping the potential of wild Cajanus species through pre-breeding for improving resistance to pod borer, Helicoverpa armigera, in cultivated pigeonpea (Cajanus cajan (L.) Millsp.). Biology-Basel, 11, 485.

Sharma S, Paul P J, Kumar C V S, Rao P J, Prashanti L, Muniswamy S, Sharma M. 2019. Evaluation and identification of promising introgression lines derived from wild Cajanus species for broadening the genetic base of cultivated pigeonpea [Cajanus cajan (L.) Millsp.]. Frontiers in Plant Science, 10, 1269.

Si Z, Chen H, Zhu X, Cao Z, Zhang T. 2017. Genetic dissection of lint yield and fiber quality traits of G. hirsutum in G. barbadense background. Molecular Breeding, 37, 9.

Stelly D M, Saha S, Raska D A, Jenkins J N, McCarty J C, Gutierrez O A. 2005. Registration of 17 upland (Gossypium hirsutum) cotton germplasm lines disomic for different G. barbadense chromosome or arm substitutions. Crop Science, 45, 2663–2665.

Su J, Pang C, Wei H, Li L, Liang B, Wang C, Song M, Wang H, Zhao S, Jia X, Mao G, Huang L, Geng D, Wang C, Fan S, Yu S. 2016. Identification of favorable SNP alleles and candidate genes for traits related to early maturity via GWAS in upland cotton. BMC Genomics, 17, 687.

Udall J A, Long E, Hanson C, Yuan D, Ramaraj T, Conover J L, Gong L, Arick M A, Grover C E, Peterson D G, Wendel J F. 2019. De novo genome sequence assemblies of Gossypium raimondii and Gossypium turneri. G3-Genes Genomes Genetics, 9, 3079–3085.

Uluisik S. 2021. Chemical and structural quality traits during postharvest ripening regulated by chromosome segments from a wild relative of tomato Solanum pennellii IL4-2 and IL5-1. Journal of Food Biochemistry, 45, e13858.

Van Schalkwyk A, Wenzl P, Smit S, Lopez-Cobollo R, Kilian A, Bishop G, Hefer C, Berger D K. 2012. Bin mapping of tomato diversity array (DArT) markers to genomic regions of Solanum lycopersicum × Solanum pennellii introgression lines. Theoretical and Applied Genetics, 124, 947–956.

Wang C L, Ullo M, Mullen T R, Yu J Z, Roberts P A. 2012. QTL analysis for transgressive resistance to root-knot nematode in interspecific cotton (Gossypium spp.) progeny derived from susceptible parents. PLoS ONE, 7, e34874.

Wang C L, Ulloa M, Robert P A. 2008. A transgressive segregation factor (RKN2) in Gossypium barbadense for nematode resistance clusters with gene rkn1 in G. hirsutum. Molecular Genetics and Genomics, 279, 41–52.

Wang F, Zhang J, Chen Y, Zhang C, Gong J, Song Z, Zhou J, Wang J, Zhao C, Jiao M, Liu A, Du Z, Yuan Y, Fan S, Zhang J. 2020. Identification of candidate genes for key fibre-related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions. Plant Biotechnolgy Journal, 18, 707–720.

Wang J K, Wan X Y, Crossa J, Crouch J, Weng J F, Zhai H Q, Wan J M. 2006. QTL mapping of grain length in rice (Oryza sativa L.) using chromosome segment substitution lines. Genetics Research, 88, 93–104.

Wang K B, Wang Z W, Li F G, Ye W W, Wang J Y, Song G L, Yue Z, Cong L, Shang H H, Zhu S L, Zou C S, Li Q, Yuan Y L, Lu C R, Wei H L, Gou C Y, Zheng Z Q, Yin Y, Zhang X Y, Liu K, et al. 2012. The draft genome of a diploid cotton Gossypium raimondii. Nature Genetics, 44, 1098–1103.

Wang M, Li J, Qi Z, Long Y, Pei L, Huang X, Grover C E, Du X, Xia C, Wang P, Liu Z, You J, Tian X, Ma Y, Wang R, Chen X, He X, Fang D D, Sun Y, Tu L, et al. 2022. Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium. Nature Genetics, 54, 1959–1971.

Wang M, Li J, Wang P, Liu F, Liu Z, Zhao G, Xu Z, Pei L, Grover C E, Wendel J F, Wang K, Zhang X. 2021. Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton. Molecular Biology and Evolution, 38, 3621–3636.

Wang M, Tu L, Yuan D, Zhu D, Shen C, Li J, Liu F, Pei L, Wang P, Zhao G, Ye Z, Huang H, Yan F, Ma Y, Zhang L, Liu M, You J, Yang Y, Liu Z, Huang F, et al. 2019. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nature Genetics, 51, 224–229.

Wei H L, Xue Y J, Chen P Y, Hao P B, Wei F, Sun L, Yang Y L. 2021. Genome-wide identification and functional investigation of 1-aminocyclopropane-1-carboxylic acid oxidase (ACO) genes in cotton. Plants-Basel, 10, 17.

Wendel J F. 1989. New world tetraploid cottons contain old world cytoplasm. Proceedings of the National Academy of Sciences of the United States of America, 86, 4132–4136.

Wendel J F, Brubaker C, Alvarez I, Cronn R, Stewart J M. 2009. Evolution and natural history of the cotton genus. In: Paterson A H, ed., Genetics and Genomics of Cotton in Plant Genetics and Genomics: Crops and Models. Springer, New York, NY. pp. 3–22.

Wendel J F, Cronn R C. 2003. Polyploidy and the evolutionary history of cotton. Advances in Agronomy, 78, 139–186.

Xi Z, He F, Zeng R, Zhang Z, Ding X, Li W, Zhang G. 2006. Development of a wide population of chromosome single-segment substitution lines in the genetic background of an elite cultivar of rice (Oryza sativa L.). Genome, 49, 476–484.

Xu Z, Chen J, Meng S, Xu P, Zhai C, Huang F, Guo Q, Zhao L, Quan Y, Shangguan Y, Meng Z, Wen T, Zhang Y, Zhang X, Zhao J, Xu J, Liu J, Gao J, Ni W, Chen X, et al. 2022. Genome sequence of Gossypium anomalum facilitates interspecific introgression breeding. Plant Communications, 3, 100350.

Xu Z, Yu J, Kohel R J, Percy R G, Beavis W D, Main D, Yu J Z. 2015. Distribution and evolution of cotton fiber development genes in the fibreless Gossypium raimondii genome. Genomics, 106, 61–69.

Yang Z, Ge X, Yang Z, Qin W, Sun G, Wang Z, Li Z, Liu J, Wu J, Wang Y, Lu L, Wang P, Mo H, Zhang X, Li F. 2019. Extensive intraspecific gene order and gene structural variations in upland cotton cultivars. Nature Communications, 10, 2989.

Yu J, Pressoir G, Briggs W H, Vroh Bi I, Yamasaki M, Doebley J F, McMullen M D, Gaut B S, Nielsen D M, Holland J B, Kresovich S, Buckler E S. 2006. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nature Genetics, 38, 203–208.

Zhai C, Xu P, Zhang X, Guo Q, Zhang X, Xu Z, Shen X. 2015. Development of Gossypium anomalum-derived microsatellite markers and their use for genome-wide identification of recombination between the G. anomalum and G. hirsutum genomes. Theoretical and Applied Genetics, 128, 1531–1540.

Zhai H C, Gong W K, Tan Y N, Liu A Y, Song W W, Li J W, Deng Z Y, Kong L L, Gong J W, Shang H H, Chen T T, Ge Q, Shi Y Z, Yuan Y L. 2016. Identification of chromosome segment substitution lines of Gossypium barbadense introgressed in G. hirsutum and quantitative trait locus mapping for fiber quality and yield traits. PLoS ONE, 11, e0159101.

Zhang B, Ma L, Wu B, Xing Y, Qiu X. 2022. Introgression lines: Valuable resources for functional genomics research and breeding in rice (Oryza sativa L.). Frontiers in Plant Science, 13, 863789.

Zhang J, Wu M, Yu J, Li X, Pei W. 2016. Breeding potential of introgression lines developed from interspecific crossing between upland ccotton (Gossypium hirsutum) and Gossypium barbadense: Heterosis, combining ability and genetic effects. PLoS ONE, 11, e0143646.

Zhang K, Kuraparthy V, Fang H, Zhu L, Sood S, Jones D C. 2019. High-density linkage map construction and QTL analyses for fiber quality, yield and morphological traits using CottonSNP63K array in upland cotton (Gossypium hirsutum L.). BMC Genomics, 20, 889.

Zhang S W, Feng L C, Xing L T, Yang B, Gao X, Zhu X F, Zhang T Z, Zhou B L. 2016. New QTLs for lint percentage and boll weight mined in introgression lines from two feral landraces into Gossypium hirsutum acc TM-1. Plant Breeding, 135, 90–101.

Zhang T, Hu Y, Jiang W, Fang L, Guan X, Chen J, Zhang J, Saski C A, Scheffler B E, Stelly D M, Hulse-Kemp A M, Wan Q, Liu B, Liu C, Wang S, Pan M, Wang Y, Wang D, Ye W, Chang L, et al. 2015. Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc TM-1) provides a resource for fiber improvement. Nature Biotechnology, 33, 531–553.

Zhu D, Li X, Wang Z, You C, Nie X, Sun J, Zhang X, Zhang D, Lin Z. 2020. Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton. BMC Genomics, 21, 431.

Zou J, Zhang Z, Kang Q, Yu S, Wang J, Chen L, Liu Y, Ma C, Zhu R, Zhu Y, Dong X, Jiang H, Wu X, Wang N, Hu Z, Qi Z, Liu C, Chen Q, Xin D, Wang J. 2022. Characterization of chromosome segment substitution lines reveals candidate genes associated with the nodule number in soybean. Journal of Integrative Agriculture, 21, 2197–2210.