Angaji S A, Septiningsih E M, Mackill D J, Ismail A M. 2010. QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.). Euphytica, 172, 159–168.

Arbona V, Hossain Z, Lopez-Climent M F, Perez-Clemente R M, Gomez-Cadenas A. 2008. Antioxidant enzymatic activity is linked to waterlogging stress tolerance in citrus. Physiologia Plantarum, 132, 452–466.

Bailey-Serres J, Chang R. 2005. Sensing and signalling in response to oxygen deprivation in plants and other organisms. Annals of Botany, 96, 507–518.

Bailey-Serres J, Colmer T D. 2014. Plant tolerance of flooding stress - Recent advances. Plant Cell and Environment, 37, 2211–2215.

Bailey-Serres J, Fukao T, Gibbs D J, Holdsworth M J, Lee S C, Licausi F, Perata P, Voesenek L A C J, van Dongen J T. 2012. Making sense of low oxygen sensing. Trends in Plant Science, 17, 129–138.

Bailey-Serres J, Voesenek L A C J. 2008. Flooding stress: Acclimations and genetic diversity. Annual Review of Plant Biology, 59, 313–339.

Ballesteros D C, Mason R E, Addison C K, Acuña M A, Arguello M N, Subramanian N, Miller R G, Sater H, Gbur E E, Miller D, Griffey C A, Barnett M D, Tucker D. 2015. Tolerance of wheat to vegetative stage soil waterlogging is conditioned by both constitutive and adaptive QTL. Euphytica, 201, 329–343.

Borisjuk L, Macherel D, Benamar A, Wobus U, Rolletschek H. 2007. Low oxygen sensing and balancing in plant seeds: A role for nitric oxide. New Phytologist, 176, 813–823.

Borrego-Benjumea A, Carter A, Tucker J R, Yao Z, Xu W, Badea A. 2020. Genome-wide analysis of gene expression provides new insights into waterlogging responses in barley (Hordeum vulgare L.). Plants, 9, 240.

Borrego-Benjumea A, Carter A, Zhu M, Tucker J R, Zhou M X, Badea A. 2021. Genome-wide association study of waterlogging tolerance in barley (Hordeum vulgare L.) under controlled field conditions. Frontiers in Plant Science, 12, 711654.

Broughton S, Zhou G F, Teakle N L, Matsuda R, Zhou M X, O Leary R A, Colmer T D, Li C D. 2015. Waterlogging tolerance is associated with root porosity in barley (Hordeum vulgare L.). Molecular Breeding, 35, 1–15.

Brownstein G, Wilson J B, Burritt D J. 2013. Waterlogging tolerance on a New Zealand saltmarsh. Journal of Experimental Marine Biology and Ecology, 446, 202–208.

Campbell M T, Proctor C A, Dou Y, Schmitz A J, Phansak P, Kruger G R, Zhang C, Walia H. 2015. Genetic and molecular characterization of submergence response identifies subtol6 as a major submergence tolerance locus in maize. PLoS ONE, 10, e0120385.

Chen S, Xu Z Y, Adil M F, Zhang G P. 2021. Cultivar-, stress duration- and leaf age-specific hub genes and co-expression networks responding to waterlogging in barley. Environmental and Experimental Botany, 191, 104599.

Colmer T D. 2003. Long-distance transport of gases in plants: A perspective on internal aeration and radial oxygen loss from roots. Plant Cell and Environment, 26, 17–36.

Dai F, Wang X L, Zhang X Q, Chen Z H, Nevo E, Jin G L, Wu D Z, Li C D, Zhang G P. 2018. Assembly and analysis of a qingke reference genome demonstrate its close genetic relation to modern cultivated barley. Plant Biotechnology Journal, 16, 760–770.

Dennis E S, Dolferus R, Ellis M, Rahman M, Wu Y, Hoeren F U, Grover A, Ismond K P, Good A G, Peacock W J. 2000. Molecular strategies for improving waterlogging tolerance in plants. Journal of Experimental Botany, 51, 89–97.

Dickin E, Wright D. 2008. The effects of winter waterlogging and summer drought on the growth and yield of winter wheat (Triticum aestivum L.). European Journal of Agronomy, 28, 234–244.

Ding F G, Tong J Y, Xu R, Chen J, Xu X T, Nadeem M, Wang S P, Zhang Y X, Zhu Z W, Wang F J, Fang Z W, Hao Y F. 2023. Identification of stable quantitative trait loci underlying waterlogging tolerance post-anthesis in common wheat (Triticum aestivum). The Crop Journal, 11, 1163–1170.

Donat M G, Lowry A L, Alexander L V, O’Gorman P A, Maher N. 2016. More extreme precipitation in the world’s dry and wet regions. Nature Climate Change, 6, 508–513.

Dordas C. 2009. Nonsymbiotic hemoglobins and stress tolerance in plants. Plant Science, 176, 433–440.

Dordas C, Hasinoff B B, Igamberdiev A U, Manac’h N, Rivoal J, Hill R D. 2003. Expression of a stress-induced hemoglobin affects NO levels produced by alfalfa root cultures under hypoxic stress. Plant Journal, 35, 763–770.

Du H W, Shen X M, Huang Y Q, Huang M, Zhang Z X. 2016. Overexpression of Vitreoscilla hemoglobin increases waterlogging tolerance in Arabidopsis and maize. BMC Plant Biology, 16, 1–11.

Ejiri M, Fukao T, Miyashita T, Shiono K. 2021. A barrier to radial oxygen loss helps the root system cope with waterlogging-induced hypoxia. Breeding Science, 71, 40–50.

Evans D E, Gladish D K. 2017. Plant responses to waterlogging. Encyclopedia of Applied Plant Sciences, 1, 36–39.

Eysholdt-Derzso E, Sauter M. 2017. Root bending is antagonistically affected by hypoxia and ERF-mediated transcription via auxin signaling. Plant Physiology, 175, 412–423.

Farooq A, Bukhari S A, Akram N A, Ashraf M, Wijaya L, Alyemeni M N. 2020. Exogenously applied ascorbic acid-mediated changes in osmoprotection and oxidative defense system enhanced water stress tolerance in different cultivars of safflower (Carthamus tinctorious L.). Plants, 9, 104.

Fukao T, Bailey-Serres J. 2008. Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proceedings of the National Academy of Sciences of the United States of America, 105, 16814–16819.

Fukao T, Xu K N, Ronald P C, Bailey-Serres J. 2006. A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. Plant Cell, 18, 2021–2034.

Gao J W, Su Y, Yu M, Huang Y Q, Shen A. 2021. Potassium alleviates post-anthesis photosynthetic reductions in winter wheat caused by waterlogging at the stem elongation stage. Frontiers in Plant Science, 11, 607475.

Gasch P, Fundinger M, Müller J T, Lee T, Bailey-Serres J, Mustroph A. 2015. Redundant ERF-VII transcription factors bind an evolutionarily-conserved cis-motif to regulate hypoxia-responsive gene expression in Arabidopsis. Plant Cell, 28, 160–180.

Ghosal S, Quilloy F A, Casal C, Septiningsih E M, Mendioro M S, Dixit S. 2020. Trait-based mapping to identify the genetic factors underlying anaerobic germination of rice: Phenotyping, GXE, and QTL mapping. BMC Genetics, 21, 6.

Gibbs D J, Conde J V, Berckhan S, Mendiondo G M, Prasad G, Holdsworth M J. 2015. Group VII ethylene response factors coordinate oxygen and nitric oxide signal transduction and stress responses in plants. Plant Physiology, 169, 23–31.

Gibbs D J, Lee S C, Isa N M, Gramuglia S, Fukao T, Bassel G W, Correia C S, Corbineau F, Theodoulou F L, Bailey-Serres J, Holdsworth M J. 2011. Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants. Nature, 479, 415–418.

Gill M B, Zeng F R, Shabala L, Zhang G P, Yu M, Demidchik V, Shabala S, Zhou M X. 2019. Identification of QTL related to ROS formation under hypoxia and their association with waterlogging and salt tolerance in barley. International Journal of Molecular Sciences, 20, 699.

Gomathi R, Rao P N G, Chandran K, Selvi A. 2015. Adaptive responses of sugarcane to waterlogging stress: An overview. Sugar Technology, 17, 325–338.

Grzesiak M T, Janowiak F, Szczyrek P, Kaczanowska K, Ostrowska A, Rut G, Hura T, Rzepka A, Grzesiak S. 2016. Impact of soil compaction stress combined with drought or waterlogging on physiological and biochemical markers in two maize hybrids. Acta Physiologiae Plantarum, 38, 109.

Guo Y Y, Chen J, Kuang L H, Wang N H, Zhang G P, Jiang L X, Wu D Z. 2020. Effect of waterlogging stress on early seedling development and transcriptomic responses in Brassica napus. Molecular Breeding, 40, 85.

Habibi F, Liu T, Shahid M A, Schaffer B, Sarkhosh A. 2023. Physiological, biochemical, and molecular responses of fruit trees to root zone hypoxia. Environmental and Experimental Botany, 206, 105179.

Haddadi B S, Hassanpour H, Niknam V. 2016. Effect of salinity and waterlogging on growth, anatomical and antioxidative responses in Mentha aquatica L. Acta Physiologiae Plantarum, 38, 1–11.

Haque E, Abe F, Mori M, Nanjo Y, Komatsu S, Oyanagi A, Kawaguchi K. 2014. Quantitative proteomics of the root of transgenic wheat expressing TaBWPR-1.2 genes in response to waterlogging. Proteomes, 2, 485–500.

Hattori Y, Miura K, Asano K, Yamamoto E, Mori H, Kitano H, Matsuoka M, Ashikari M. 2007. A major QTL confers rapid internode elongation in response to water rise in deepwater rice. Breeding Science, 57, 305–314.

Hattori Y, Nagai K, Mori H, Kitano H, Matsuoka M, Ashikari M. 2008. Mapping of three QTLs that regulate internode elongation in deepwater rice. Breeding Science, 58, 39–46.

Herzog M, Striker G G, Colmer T D, Pedersen O. 2016. Mechanisms of waterlogging tolerance in wheat - A review of root and shoot physiology. Plant Cell and Environment, 39, 1068–1086.

Hess N, Klode M, Anders M, Sauter M. 2011. The hypoxia responsive transcription factor genes ERF71/HRE2 and ERF73/HRE1 of Arabidopsis are differentially regulated by ethylene. Physiologia Plantarum, 143, 41–49.

Hill R D. 2012. Non-symbiotic haemoglobins - What’s happening beyond nitric oxide scavenging? Aob Plants, 2012, pls004.

Hsu F, Chou M Y, Chou S J, Li Y R, Peng H P, Shih M C. 2013. Submergence confers immunity mediated by the WRKY22 transcription factor in Arabidopsis. Plant Cell, 25, 2699–2713.

Hwang J H, Lee M O, Lee D H. 2011. Expression profile analysis of hypoxia responses in Arabidopsis roots and shoots. Journal of Plant Biology, 54, 373–383.

Isayenkov S V. 2019. Genetic sources for the development of salt tolerance in crops. Plant Growth Regulation, 89, 1–17.

Jain V, Singla N, Jain S, Gupta K. 2010. Activities of enzymes of fermentation pathways in the leaves and roots of contrasting cultivars of sorghum (Sorghum bicolor L.) during flooding. Physiology and Molecular Biology of Plants, 16, 241–247.

Jiménez J D, Cardoso J A, Leiva L F, Gil J, Forero M G, Worthington M L, Miles J W, Rao I M. 2017. Non-destructive phenotyping to identify Brachiaria hybrids tolerant to waterlogging stress under field conditions. Frontiers in Plant Science, 8, 167.

Jiménez J D, Clode P L, Signorelli S, Veneklaas E J, Colmer T D, Kotula L. 2021. The barrier to radial oxygen loss impedes the apoplastic entry of iron into the roots of Urochloa humidicola. Journal of Experimental Botany, 72, 3279–3293.

Jung K H, Seo Y S, Walia H, Cao P, Fukao T, Canlas P E, Amonpant F, Bailey-Serres J, Ronald P C. 2010. The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiology, 152, 1674–1692.

Kaur G, Zurweller B, Motavalli P P, Nelson K A. 2019. Screening corn hybrids for soil waterlogging tolerance at an early growth stage. Agriculture, 9, 33.

Khabaz-Saberi H, Rengel Z. 2010. Aluminum, manganese, and iron tolerance improves performance of wheat genotypes in waterlogged acidic soils. Journal of Plant Nutrition and Soil Science, 173, 461–468.

Kim Y H, Hwang S J, Waqas M, Khan A L, Lee J H, Lee J D, Nguyen H T, Lee I J. 2015. Comparative analysis of endogenous hormones level in two soybean (Glycine max L.) lines differing in waterlogging tolerance. Frontiers in Plant Science, 6, 714.

Komatsu S, Shirasaka N, Sakata K. 2013. ‘Omics’ techniques for identifying flooding-response mechanisms in soybean. Journal of Proteome Research, 93, 169–178.

Kretzschmar T, Pelayo M A F, Trijatmiko K R, Gabunada L F M, Alam R, Jimenez R, Mendioro M S, Slametloedin I H, Sreenivasulu N, Baileyserres J. 2015. A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice. Nature Plants, 1, 15124.

Kreuzwieser J, Rennenberg H. 2014. Molecular and physiological responses of trees to waterlogging stress. Plant Cell and Environment, 37, 2245–2259.

Kuai J, Chen Y L, Wang Y H, Meng Y L, Chen B L, Zhao W Q, Zhou Z G. 2016. Effect of waterlogging on carbohydrate metabolism and the quality of fiber in cotton (Gossypium hirsutum L.). Frontiers in Plant Science, 7, 877.

Kuai J, Li X Y, Li Z, Xie Y, Zhou G S. 2020. Leaf carbohydrates assimilation and metabolism affect seed yield of rapeseed with different waterlogging tolerance under the interactive effects of nitrogen and waterlogging. Journal of Agronomy and Crop Science, 206, 823–836.

Kumutha D, Sairam R K, Ezhilmathi K, Chinnusamy V, Meena R C. 2008. Effect of waterlogging on carbohydrate metabolism in pigeon pea (Cajanus cajan L.): Upregulation of sucrose synthase and alcohol dehydrogenase. Plant Science, 175, 706–716.

Kuroha T, Nagai K, Gamuyao R, Wang D R, Furuta T, Nakamori M, Kitaoka T, Adachi K, Minami A, Mori Y, Mashiguchi K, Seto Y, Yamaguchi S, Kojima M, Sakakibara H, Wu J, Ebana K, Mitsuda N, Ohme-Takagi M, Yanagisawa S. 2018. Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding. Science, 361, 181–185.

Lee K W, Chen P W, Lu C A, Chen S, Ho T H D, Yu S M. 2009. Coordinated responses to oxygen and sugar deficiency allow rice seedlings to tolerate flooding. Science Signaling, 2, ra61.

Lekshmy S, Jha S K, Sairam R K. 2015. Elucidation of Abiotic Stress Signaling in Plants, Functional Genomics Perspectives. Springer, New York. pp. 227–242.

Li H B, Vaillancourt R, Mendham N, Zhou M X. 2008. Comparative mapping of quantitative trait loci associated with waterlogging tolerance in barley (Hordeum vulgare L.). BMC Genomics, 9, 401.

Liao W B, Huang G B, Yu J H, Zhang M L. 2012. Nitric oxide and hydrogen peroxide alleviate drought stress in marigold explants and promote its adventitious root development. Plant Physiology and Biochemistry, 58, 6–15.

Liao W B, Huang G B, Yu J H, Zhang M L, Shi X L. 2015. Nitric oxide and hydrogen peroxide are involved in indole-3-butyric acid-induced adventitious root development in marigold. Journal of Horticultural Science and Biotechnology, 86, 159–165.

Licausi F, Kosmacz M, Weits D A, Giuntoli B, Giorgi F M, Voesenek L A C J, Perata P, Dongen J T V. 2011. Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization. Nature, 479, 419–422.

Liu Z J, Kumari S, Zhang L F, Zheng Y L, Ware D. 2012. Characterization of miRNAs in response to short-term waterlogging in three inbred lines of Zea mays. PLoS ONE, 7, e39786.

Lobos G A, Camargo A V, del Pozo A, Araus J L, Ortiz R, Doonan J H. 2017. Editorial: Plant phenotyping and phenomics for plant breeding. Frontiers in Plant Science, 8, 2181.

Lu S W, Friesen T L, Faris J D. 2011. Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.). Molecular Genetics and Genomics, 285, 485–503.

Luan H Y, Chen C Y, Yang J, Qiao H L, Li H T, Li S F, Zheng J Y, Shen H Q, Xu X, Wang J. 2022. Genome-wide association scan and transcriptome analysis reveal candidate genes for waterlogging tolerance in cultivated barley. Frontiers in Plant Science, 13, 1048939.

Luan H Y, Guo B J, Pan Y H, Lv C, Shen H Q, Xu R G. 2018a. Morpho-anatomical and physiological responses to waterlogging stress in different barley (Hordeum vulgare L.) genotypes. Plant Growth Regulation, 85, 399–409.

Luan H Y, Guo B J, Shen H Q, Pan Y H, Hong Y, Lv C, Xu R G. 2020. Overexpression of barley transcription factor HvERF2.11 in Arabidopsis enhances plant waterlogging tolerance. International Journal of Molecular Sciences, 21, 1982.

Luan H Y, Li H T, Li Y, Chen C Y, Li S F, Wang Y, Yang J, Xu M, Shen H Q, Qiao H L, Wang J. 2023. Transcriptome analysis of barley (Hordeum vulgare L.) under waterlogging stress, and overexpression of the HvADH4 gene confers waterlogging tolerance in transgenic Arabidopsis. BMC Plant Biology, 23, 62.

Luan H Y, Shen H Q, Pan Y H, Guo B J, Lv C, Xu R G. 2018b. Elucidating the hypoxic stress response in barley (Hordeum vulgare L.) during waterlogging: A proteomics approach. Scientific Reports, 8, 9655.

Ma S Y, Gai P P, Wang Y Y, Ullah N, Zhang W J, Fan Y H, Shan Y J, Huang Z L, Hu X. 2021. Carbohydrate assimilation and translocation regulate grain yield formation in wheat crops (Triticum aestivum L.) under post-flowering waterlogging. Agronomy, 11, 2209.

Manik S M N, Quamruzzaman M, Zhao C C, Johnson P, Hunt I, Shabala S, Zhou M X. 2022. Genome-wide association study reveals marker trait associations (MTA) for waterlogging-triggered adventitious roots and aerenchyma formation in barley. International Journal of Molecular Sciences, 23, 3341.

Mano Y, Muraki M, Fujimori M, Takamizo T, Kindiger B. 2005a. Identification of QTL controlling adventitious root formation during flooding conditions in teosinte (Zea mays ssp. Huehuetenangensis) seedlings. Euphytica, 142, 33–42.

Mano Y, Omori F. 2013. Flooding tolerance in interspecific introgression lines containing chromosome segments from teosinte (Zea nicaraguensis) in maize (Zea mays subsp. Mays). Annals of Botany, 112, 1125–1139.

Mano Y, Omori F, Muraki M, Takamizo T. 2005b. QTL mapping of adventitious root formation under flooding conditions in tropical maize (Zea mays L.) seedlings. Breeding Science, 55, 343–347.

Mano Y, Omori F, Takamizo T, Kindiger B, Bird R M, Loaisiga C H, Takahashi H. 2007. QTL mapping of root aerenchyma formation in seedlings of a maize×rare teosinte “Zea nicaraguensis” cross. Plant and Soil, 295, 103–113.

Mano Y, Takeda K. 2012. Accurate evaluation and verification of varietal ranking for flooding tolerance at the seedling stage in barley (Hordeum vulgare L.). Breeding Science, 62, 3–10.

Matsukura C, Kawai M, Toyofuku K, Barrero R A, Yamaguchi J. 2000. Transverse vein differentiation associated with gas space formation-fate of the middle cell layer in leaf sheath development of rice. Annals of Botany, 85, 19–27.

McDonald M P, Galwey N W, Colmer T D. 2001. Waterlogging tolerance in the tribe Triticeae: The adventitious roots of Critesion marinum have a relatively high porosity and a barrier to radial oxygen loss. Plant Cell and Environment, 24, 585–596.

Mendiondo G M, Gibbs D J, Szurman-Zubrzycka M, Korn A, Marquez J, Szarejko I, Maluszynski M, King J, Axcell B, Smart K. 2016. Enhanced waterlogging tolerance in barley by manipulation of expression of the N-end rule pathway E3 ligase PROTEOLYSIS6. Plant Biotechnology Journal, 14, 40–50.

Miller G, Shulaev V, Mittler R. 2008. Reactive oxygen signaling and abiotic stress. Physiology Plantarum, 133, 481–489.

Minji P, Huikyeong Y, Hyeokgon P, Jun L, Soohwan K, Yongsic H. 2010. Interference with oxidative phosphorylation enhances anoxic expression of rice α-amylase genes through abolishing sugar regulation. Journal of Experimental Botany, 61, 3235–3244.

Mui N T, Zhou M X, Parsons D, Smith R W. 2021. Aerenchyma formation in adventitious roots of tall fescue and cocksfoot under waterlogged conditions. Agronomy, 11, 2487.

Mustroph A, Barding G A, Kaiser K A, Larive C K, Bailey-Serres J. 2015. Characterization of distinct root and shoot responses to low-oxygen stress in Arabidopsis with a focus on primary C- and N-metabolism. Plant Cell and Environment, 37, 2366–2380.

Nanjo Y, Maruyama K, Yasue H, Yamaguchi-Shinozaki K, Shinozaki K, Komatsu S. 2011. Transcriptional responses to flooding stress in roots including hypocotyl of soybean seedlings. Plant Molecular Biology, 77, 129–144.

Panozzo A, Dal Cortivo C, Ferrari M, Vicelli B, Varotto S, Vamerali T. 2019. Morphological changes and expressions of AOX1A, CYP81D8, and putative PFP genes in a large set of commercial maize hybrids under extreme waterlogging. Frontiers in Plant Science, 10, 62.

Papdi C, Perez-Salamo I, Joseph M P, Giuntoli B, Bogre L, Koncz C, Szabados L. 2015. The low oxygen, oxidative and osmotic stress responses synergistically act through the ethylene response factor VII genes RAP2.12, RAP2.2 and RAP2.3. Plant Journal, 82, 772–784.

Paradiso A, Caretto S, Leone A, Bove A, Nisi R, De Gara L. 2016. ROS production and scavenging under anoxia and re-oxygenation in Arabidopsis cells: A balance between redox signaling and impairment. Frontiers in Plant Science, 7, 1803.

Parolin P. 2001. Morphological and physiological adjustments to waterlogging and drought in seedlings of Amazonian floodplain trees. Oecologia, 128, 326–335.

Pedersen O, Sauter M, Colmer T D, Nakazono M. 2020. Regulation of root adaptive anatomical and morphological traits during low soil oxygen. New Phytologist, 229, 42–49.

Phukan U J, Mishra S, Shukla R K. 2016. Waterlogging and submergence stress: Affects and acclimation. Critical Reviews in Biotechnology, 36, 956–966.

Ploschuk R A, Miralles D J, Colmer T D, Ploschuk E L, Striker G G. 2018. Waterlogging of winter crops at early and late stages: Impacts on leaf physiology, growth and yield. Frontiers in Plant Science, 9, 1863.

Ploschuk R A, Miralles D J, Colmer T D, Striker G G. 2020. Waterlogging differentially affects yield and its components in wheat, barley, rapeseed and field pea depending on the timing of occurrence. Journal of Agronomy and Crop Science, 206, 363–375.

Pucciariello C, Perata P. 2017. New insights into reactive oxygen species and nitric oxide signalling under low oxygen in plants. Plant Cell and Environment, 40, 473–482.

Qi X H, Li Q Q, Shen J T, Qian C L, Xu X W, Xu Q, Chen X H. 2020. Sugar enhances waterlogging-induced adventitious root formation in cucumber by promoting auxin transport and signalling. Plant Cell and Environment, 43, 1545–1557.

Qiu F Z, Zheng Y L, Zhang Z L, Xu S Z. 2007. Mapping of QTL associated with waterlogging tolerance during the seedling stage in maize. Annals of Botany, 99, 1067–1081.

Ren B Z, Zhang J W, Dong S T, Liu P, Zhao B, Li H. 2017. Nitrapyrin improves grain yield and nitrogen use efficiency of summer maize waterlogged in the field. Agronomy Journal, 109, 185–192.

Ren B Z, Zhang J W, Li X, Fan X, Dong S T, Liu P, Zhao B. 2014. Effects of waterlogging on the yield and growth of summer maize under field conditions. Canadian Journal of Plant Science, 94, 23–31.

Rudy D, Mark W, Rebecka C, Yo M, Kathleen I, Allen G. 2008. Functional analysis of lactate dehydrogenase during hypoxic stress in Arabidopsis. Functional Plant Biology, 35, 131–140.

Rzewuski G, Sauter M. 2008. Ethylene biosynthesis and signaling in rice. Plant Science, 175, 32–42.

Sairam R K, Dharmar K, Chinnusamy V, Lekshmy S, Joshi R, Bhattacharya P. 2012. The role of non-symbiotic haemoglobin and nitric oxide homeostasis in waterlogging tolerance in Vigna species. Biologia Plantarum, 56, 528–536.

Sánchez C, Cabrera J J, Gates A J, Bedmar E J, Richardson D J, Delgado M J. 2011. Nitric oxide detoxification in the rhizobia-legume symbiosis. Biochemical Society Transactions, 39, 184–188.

Schmidt R, Weits D A, Feulner C F, Van J D. 2018. Oxygen sensing and integrative stress signaling in plants. Plant Physiology, 176, 1131–1142.

Septiningsih E M, Hidayatun N, Sanchez D L, Nugraha Y, Carandang J, Pamplona A M, Collard B C Y, Ismail A M, Mackill D J. 2015. Accelerating the development of new submergence tolerant rice varieties: The case of Ciherang-Sub1 and PSB Rc18-Sub. Euphytica, 202, 259–268.

Septiningsih E M, Sanchez D L, Singh N, Sendon P M D, Pamplona A M, Heuer S, Mackill D J. 2012. Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru. Theoretical and Applied Genetics, 124, 867–874.

Setter T L, Waters I. 2003. Review of prospects for germplasm improvement for waterlogging tolerance in wheat, barley and oats. Plant and Soil, 253, 1–34.

Setter T L, Waters I, Sharma S K, Singh K N, Kulshreshtha N, Yaduvanshi N P, Ram P C, Singh B N, Rane J, McDonald G, Khabaz-Saberi H, Biddulph T B, Wilson R, Barclay I, McLean R, Cakir M. 2009. Review of wheat improvement for waterlogging tolerance in Australia and India: The importance of anaerobiosis and element toxicities associated with different soils. Annals of Botany, 103, 221–235.

Shiono K, Ejiri M, Shimizu K, Yamada S. 2019. Improved waterlogging tolerance of barley (Hordeum vulgare) by pretreatment with ethephon. Plant Production Science, 22, 285–295.

Shiono K, Takahashi H, Colmer T D, Nakazono M. 2008. Role of ethylene in acclimations to promote oxygen transport in roots of plants in waterlogged soils. Plant Science, 175, 52–58.

Shiono K, Yoshikawa M, Kreszies T, Yamada S, Hojo Y, Matsuura T, Mori I C, Schreiber L, Yoshioka T. 2022. Abscisic acid is required for exodermal suberization to form a barrier to radial oxygen loss in the adventitious roots of rice (Oryza sativa). New Phytologist, 233, 655–669.

Soltani A, MafiMoghaddam S, Oladzad-Abbasabadi A, Walter K, Kearns P J, Vasquez-Guzman J, Mamidi S, Lee R, Shade A L, Jacobs J L, Chilivers M I, Lowry D B, McClean P, Osorno J M. 2018. Genetic analysis of flooding tolerance in an Andean diversity panel of dry bean (Phaseolus vulgaris L.). Frontiers in Plant Science, 9, 767.

Sundgren T K, Uhlen A K, Waalen W, Lillemo M. 2018. Field screening of waterlogging tolerance in spring wheat and spring barley. Agronomy, 8, 38.

Tamang B G, Magliozzi J O, Maroof M A, Fukao T. 2014. Physiological and transcriptomic characterization of submergence and reoxygenation responses in soybean seedlings. Plant Cell and Environment, 37, 2350–2365.

Tang H, Bi H, Liu B, Lou S L, Song Y, Tong S F, Chen N N, Jiang Y Z, Liu J Q, Liu H H. 2021. WRKY33 interacts with WRKY12 protein to up-regulate RAP2.2 during submergence induced hypoxia response in Arabidopsis thaliana. New Phytologist, 229, 106–125.

Thiel J, Rolletschek H, Friedel S, Lunn J E, Nguyen T H, Feil R, Tschiersch H, Muller M, Borisjuk L. 2011. Seed-specific elevation of non-symbiotic hemoglobin AtHb1: Beneficial effects and underlying molecular networks in Arabidopsis thaliana. BMC Plant Biology, 11, 48.

Tong C, Hill C B, Zhou G F, Zhang X Q, Jia Y, Li C D. 2021. Opportunities for improving waterlogging tolerance in cereal crops - Physiological traits and genetic mechanisms. Plants, 10, 1560.

Unger I M, Kennedy A C, Muzika R M. 2009. Flooding effects on soil microbial communities. Applied Soil Ecology, 42, 1–8.

Valliyodan B, Ye H, Song L, Murphy M, Shannon J G, Nguyen H T. 2017. Genetic diversity and genomic strategies for improving drought and waterlogging tolerance in soybeans. Journal of Experimental Botany, 68, 1835–1849.

Vidoz M L, Loreti E, Mensuali A, Alpi A, Perata P. 2010. Hormonal interplay during adventitious root formation in flooded tomato plants. Plant Journal, 63, 551–562.

Voesenek L A C J, Bailey-Serres J. 2013. Flooding tolerance: O2 sensing and survival strategies. Current Opinion in Plant Biology, 16, 647–653.

Voesenek L A C J, Bailey-Serres J. 2015. Flood adaptive traits and processes: An overview. New Phytologist, 206, 57–73.

Vwioko E, Adinkwu O, El-Esawi M A. 2017. Comparative physiological, biochemical, and genetic responses to prolonged waterlogging stress in okra and maize given exogenous ethylene priming. Frontiers in Physiology, 8, 632.

Wang Y, Jie K, Chen B, Zhou Z, Meng Y, Zhao W, Liu Z. 2014. Waterlogging during flowering and boll forming stages affects sucrose metabolism in the leaves subtending the cotton boll and its relationship with boll weight. Plant Science, 223, 79–98.

Watanabe K, Takahashi H, Sato S, Nishiuchi S, Omori F, Malik A, Colmer T D, Mano Y, Nakazono M. 2017. A major locus involved in the formation of the radial oxygen loss barrier in adventitious roots of teosinte Zea nicaraguensis is located on the short-arm of chromosome. Plant Cell and Environment, 40, 304–316.

Wei X N, Xu H J, Rong W, Ye X G, Zhang Z Y. 2019. Constitutive expression of a stabilized transcription factor group VII ethylene response factor enhances waterlogging tolerance in wheat without penalizing grain yield. Plant Cell and Environment, 42, 1471–1485.

Weits D A, Giuntoli B, Kosmacz M, Parlanti S, Hubberten H M, Riegler H, Hoefgen R, Perata P, van Dongen J T, Licausi F. 2014. Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway. Nature Communications, 5, 3425.

White M D, Klecker M, Hopkinson R J, Weits D A, Mueller C, Naumann C, O’Neill R, Wickens J, Yang J, Brooks-Bartlett J C. 2017. Plant cysteine oxidases are dioxygenases that directly enable arginyl transferase-catalysed arginylation of N-end rule targets. Nature Communications, 8, 14690.

Wiraguna E, Malik A, Erskine W. 2017. Waterlogging tolerance in lentil (Lens culinaris Medik. subsp culinaris) germplasm associated with geographic origin. Genetic Resources and Crop Evolution, 64, 579–586.

Wurms K V, Reglinski T, Buissink P, Chee A A, Fehlmann C, McDonald S, Cooney J, Jensen D, Hedderley D, McKenzie C, Rikkerink E H A. 2023. Effects of drought and flooding on phytohormones and abscisic acid gene expression in kiwifruit. International Journal of Molecular Sciences, 24, 7580.

Xie R J, Zheng L, Jiao Y, Huang X. 2021. Understanding physiological and molecular mechanisms of citrus rootstock seedlings in response to root zone hypoxia by RNA-Seq. Environmental and Experimental Botany, 192, 104647.

Xu C M, Chen L P, Chen S, Chu G, Wang D Y, Zhang X F. 2020. Effects of rhizosphere oxygen concentration on root physiological characteristics and anatomical structure at the tillering stage of rice. Annals of Applied Biology, 177, 61–73.

Xu K N, Mackill D J. 1996. A major locus for submergence tolerance mapped on rice chromosome 9. Molecular Breeding, 2, 219–224.

Xu K N, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail A M, Bailey-Serres J, Ronald P C, Mackill D J. 2006. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature, 442, 705–708.

Xu L, Pan R, Shabala L, Shabala S, Zhang W Y. 2019. Temperature influences waterlogging stress-induced damage in Arabidopsis through the regulation of photosynthesis and hypoxia-related genes. Plant Growth Regulation, 89, 143–152.

Xu L, Zhao C C, Pang J Y, Niu Y A, Liu H Q, Zhang W Y, Zhou M X. 2022. Genome-wide association study reveals quantitative trait loci for waterlogging-triggered adventitious roots and aerenchyma formation in common wheat. Frontiers in Plant Science, 13, 1066752.

Xu X W, Chen M Y, Ji J, Xu Q, Qi X H, Chen X H. 2017b. Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation. BMC Plant Biology, 17, 129.

Xu X W, Ji J, Ma X T, Xu Q, Qi X H, Chen X H. 2016. Comparative proteomic analysis provides insight into the key proteins involved in cucumber (Cucumis sativus L.) adventitious root emergence under waterlogging stress. Frontiers in Plant Science, 7, 1515–1528.

Xu X W, Ji J, Xu Q, Qi X H, Chen X H. 2017a. Inheritance and quantitative trail loci mapping of adventitious root numbers in cucumber seedlings under waterlogging conditions. Molecular Genetics and Genomics, 292, 353.

Xu X W, Wang H H, Qi X H, Xu Q, Chen X H. 2014. Waterlogging-induced increase in fermentation and related gene expression in the root of cucumber (Cucumis sativus L.). Scientia Horticulturae, 179, 388–395.

Yaduvanshi N, Setter T, Sharma S, Singh K, Kulshreshtha N. 2014. Influence of waterlogging on yield of wheat (Triticum aestivum), redox potentials, and concentrations of microelements in different soils in India and Australia. Soil Research, 50, 489–499.

Yamane K, Mariyama M, Hirooka Y, Iijima M. 2023. Root pruning is effective in alleviating the inhibition of soybean growth caused by anaerobic stress for a short period. Journal of Integrative Agriculture, 22, 1035–1044.

Yamauchi T, Watanabe K, Fukazawa A, Mori H, Abe F, Kawaguchi K, Oyanagi A, Nakazono M. 2014. Ethylene and reactive oxygen species are involved in root aerenchyma formation and adaptation of wheat seedlings to oxygen-deficient conditions. Journal of Experimental Botany, 65, 261–273.

Yan K, Zhao S J, Cui M X, Han G X, Wen P. 2018. Vulnerability of photosynthesis and photosystem I in Jerusalem artichoke (Helianthus tuberosus L.) exposed to waterlogging. Plant Physiology and Biochemistry, 125, 239–246.

Yang F F, Liu T, Wang Q Y, Du M Z, Yang T L, Liu D Z, Li S J, Liu S P. 2021. Rapid determination of leaf water content for monitoring waterlogging in winter wheat based on hyperspectral parameters. Journal of Integrative Agriculture, 20, 2613–2626.

Ye H, Song L, Chen H T, Valliyodan B, Cheng P, Ali L, Vuong T, Wu C J, Orlowski J, Buckley B, Chen P Y, Shannon J G, Nguyen H T. 2018. A major natural genetic variation associated with root system architecture and plasticity improves waterlogging tolerance and yield in soybean. Plant Cell and Environment, 41, 2169–2182.

Yin D M, Chen S M, Chen F D, Guan Z Y, Fang W M. 2010. Morpho-anatomical and physiological responses of two Dendranthema species to waterlogging. Environmental and Experimental Botany, 68, 122–130.

Yordanova R Y, Christov K N, Popova L P. 2004. Antioxidative enzymes in barley plants subjected to soil flooding. Environmental and Experimental Botany, 51, 93–101.

Yu F, Liang K, Fang T, Zhao H L, Han X S, Cai M J, Qiu F Z. 2019. A group VII ethylene response factor gene, ZmEREB180, coordinates waterlogging tolerance in maize seedlings. Plant Biotechnology Journal, 17, 2286–2298.

Yu M, Chen G Y. 2013. Conditional QTL mapping for waterlogging tolerance in two RILs populations of wheat. Springerplus, 2, 245.

Yu M, Mao S L, Chen G Y, Liu Y X, Li W, Wei Y M, Liu C J, Zheng Y L. 2014. QTLs for waterlogging tolerance at germination and seedling stages in population of recombinant inbred lines derived from a cross between synthetic and cultivated wheat genotypes. Journal of Integrative Agriculture, 13, 31–39.

Zaidi P H, Rashid Z, Vinayan M T, Almeida G D, Phagna R K, Babu R. 2015. QTL mapping of agronomic waterlogging tolerance using recombinant inbred lines derived from tropical maize (Zea mays L.) germplasm. PLoS ONE, 10, e0124350.

Zeng F R, Shabala L, Zhou M X, Zhang G P, Shabala S. 2013. Barley responses to combined waterlogging and salinity stress: Separating effects of oxygen deprivation and elemental toxicity. Frontiers in Plant Science, 4, 313

Zhang G P, Tanakamaru K, Abe J, Morita S. 2007. Influence of waterlogging on some anti-oxidative enzymatic activities of two barley genotypes differing in anoxia tolerance. Acta Physiologiae Plantarum, 29, 171–176.

Zhang J Y, Huang S N, Wang G, Xuan J P, Guo Z R. 2016. Overexpression of Actinidia deliciosa pyruvate decarboxylase 1 gene enhances waterlogging stress in transgenic Arabidopsis thaliana. Plant Physiology and Biochemistry, 106, 244–252.

Zhang P, Lv D G, Jia L T, He J L, Qin S J. 2017. Physiological and de novo transcriptome analysis of the fermentation mechanism of Cerasus sachalinensis roots in response to short-term waterlogging. BMC Genomics, 18, 649.

Zhang X C, Fan Y, Shabala S, Koutoulis A, Shabala L, Johnson P, Hu H L, Zhou M X. 2017. A new major - Effect QTL for waterlogging tolerance in wild barley (H. spontaneum). Theoretical and Applied Genetics, 130, 1559–1568.

Zhang X C, Zhou G F, Shabala S, Koutoulis A, Shabala L, Johnson P, Li C D, Zhou M X. 2016. Identification of aerenchyma formation-related QTL in barley that can be effective in breeding for waterlogging tolerance. Theoretical and Applied Genetics, 129, 1167–1177.

Zhang X Q, Wu K L, Xue D F. 2009. Effects of waterlogging stress on antioxidative enzyme system in different barley genotypes. Journal of Zhejiang University (Science B), 35, 315–320.

Zhang Y J, Song X Z, Yang G Z, Li Z H, Lu H Q, Kong X Q, Eneji A E, Dong H Z. 2015. Physiological and molecular adjustment of cotton to waterlogging at peak-flowering in relation to growth and yield. Field Crops Research, 179, 164–172.

Zhao N, Li C W, Yan Y J, Cao W, Song A P, Wang H B, Chen S M, Jiang J F, Chen F D. 2018. Comparative transcriptome analysis of waterlogging-sensitive and waterlogging-tolerant Chrysanthemum morifolium cultivars under waterlogging stress and reoxygenation conditions. International Journal of Molecular Sciences, 19, 1455–1475.

Zhao T, Pan X J, Ou Z G, Li Q, Zhang W E. 2022. Comprehensive evaluation of waterlogging tolerance of eleven Canna cultivars at flowering stage. Scientia Horticulturae, 296, 110890.

Zhou M X, Johnson P, Zhou G F, Li C D, Lance R. 2012. Quantitative trait loci for waterlogging tolerance in a barley cross of Franklin×YuYaoXiangTian Erleng and the relationship between waterlogging and salinity tolerance. Crop Science, 52, 2082–2088.

Zhou M X, Li H B, Mendham N J. 2007. Combining ability of waterlogging tolerance in barley. Crop Science, 47, 278–284.

Zhou W, Zhao D, Lin X. 1997. Effects of waterlogging on nitrogen accumulation and alleviation of waterlogging damage by application of nitrogen fertilizer and mixtalol in winter rape (Brassica napus L.). Journal of Plant Growth Regulation, 16, 47–53.

Zhou W G, Chen F, Meng Y J, Chandrasekaran U, Luo X F, Yang W Y, Shu K. 2020. Plant waterlogging/flooding stress responses: From seed germination to maturation. Plant Physiology and Biochemistry, 148, 228–236.

Zou X L, Hu C W, Zeng L, Cheng Y, Xu M Y, Zhang X K. 2014. A comparison of screening methods to identify waterlogging tolerance in the field in Brassica napus L. during plant ontogeny. PLoS ONE, 9, e89731.