|
Berendsen R L, Pieterse C M J, Bakker P A H M. 2012. The
rhizosphere microbiome and plant health. Trends in Plant Science, 17, 478–486.
Bergkemper F, Schöler A, Engel M, Lang F, Krüger J,
Schloter M, Schulz S. 2016. Phosphorus depletion in forest soils shapes
bacterial communities towards phosphorus recycling systems. Environmental Microbiology, 18, 1988–2000.
Bremner J M, Mulvaney C S. 1982. Nitrogen-total. In:
Page A L, Miller R H, Keeney D R, eds., Methods of Soil Analysis.
ASA-SSSA, Madison. pp. 595–617.
Caballero-Mellado J, Onofre-Lemus J, Santos P E D L,
Martinez-Aguilar L. 2007. The tomato rhizosphere, an environment rich in nitrogen-fixing Burkholderia species with capabilities of interest for agriculture and
bioremediation. Applied Microbiology and Biotechnology, 73, 5308–5319.
Cao N, Zhi M L, Zhao W Q, Pang J Y, Hu W, Zhou Z G, Meng
Y L. 2022. Straw retention combined with phosphorus fertilizer promotes soil
phosphorus availability by enhancing soil P-related enzymes and the abundance
of phoC and phoD genes. Soil and Tillage Research, 220, 105390.
Chen C R, Condron L M, Davis M R, Sherlock R R. 2002.
Phosphorus dynamics in the rhizosphere of perennial ryegrass (Lolium perenne L.) and radiata pine (Pinus radiate D. Don.). Soil Biology and Biochemistry, 34, 487–499.
Chen H J. 2003. Phosphatase activity and P fractions in
soils of an 18-year-old Chinese fir (Cunninghamia lanceolata)
plantation. Forest Ecology and Management, 178,
301–310.
Chen Q Q, Wu W W, Zhao T, Tan W Q, Tian J, Liang C Y.
2019. Complex gene regulation underlying mineral nutrient homeostasis in
soybean root response to acidity stress. Genes, 10, 402.
Chen X D, Jiang N, Condron L M, Dunfield K E, Chen Z H,
Wang J K, Chen L J. 2019. Impact of long-term phosphorus fertilizer inputs on
bacterial phoD gene community in a maize field, Northeast China. Science of the Total Environment, 669, 1011–1018.
Deng Q X, Zhang T, Xie D T, Yang Y H. 2021. Rhizosphere
microbial communities are significantly affected by optimized phosphorus
management in a slope farming system. Frontiers in Microbiology, 12, 739844.
Dick W A, Cheng L, Wang P. 2000. Soil acid and alkaline
phosphatase activity as pH adjustment indicators. Soil Biology and Biochemistry, 32, 1915–1919.
Edgar R C. 2013. UPARSE: Highly accurate OTU sequences
from microbial amplicon reads. Nature Methods, 10,
996–998.
Edgar R C, Haas B J, Clemente J C, Quince C, Knight R.
2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics, 27, 2194–2200.
Fierer N, Bradford M A, Jackson R B. 2007. Toward an
ecological classification of soil bacteria. Ecology, 88,
1354–1364.
Fraser T, Lynch D H, Entz M H, Dunfield K E. 2015.
Linking alkaline phosphatase activity with bacterial phoD gene abundance
in soil from a long-term management trial. Geoderma, 257–258,
115–122.
Fraser T D, Lynch D H, Gaiero J, Khosla K, Dunfield K E.
2017. Quantification of bacterial non-specific acid (phoC) and alkaline
(phoD) phosphatase genes in bulk and rhizosphere soil from organically
managed soybean fields. Applied Soil Ecology, 111,
48–56.
Gao W H, Gao K, Guo Z H, Liu Y, Jiang L, Liu C, Liu X Y,
Wang G L. 2021. Different responses of soil bacterial and fungal communities to
3 years of biochar amendment in an alkaline soybean soil. Frontiers in Microbiology, 12, 630418.
George T S, Turner B L, Gregory P J, Cade-Menun B J,
Richardson A E. 2006. Depletion of organic phosphorus from Oxisols in relation
to phosphatase activities in the rhizosphere. European Journal of Soil Science, 57, 47–57.
Guo L, Wang C, Shen R F. 2022. Stronger effects of maize
rhizosphere than phosphorus fertilization on phosphatase activity and
phosphorus-mineralizing-related bacteria in acidic soils. Rhizosphere, 23,
100555.
Harrison A F. 1987. Soil Organic Phosphorus: A
Review of World Literature. Commonwealth Agricultural Bureaux
International, Wallingford.
Hedin L O, Vitousek P M, Matson P A. 2003. Nutrient
losses over four million years of tropical forest development. Ecology, 84,
2231–2255.
Hinsinger P. 2001. Bioavailability of soil inorganic P
in the rhizosphere as affected by root-induced chemical changes: A review. Plant and Soil, 237, 173–195.
Hu M J, Peñuelas J, Sardans J, Tong C, Chang C T, Cao W
Z. 2020. Dynamics of phosphorus speciation and the phoD phosphatase gene
community in the rhizosphere and bulk soil along an estuarine
freshwater-oligohaline gradient. Geoderma, 365, 114236.
Huang J S, Hu B, Qi K B, Chen W J, Pang X Y, Bao W K,
Tian G L. 2016. Effects of phosphorus addition on soil microbial biomass and
community composition in a subalpine spruce plantation. European Journal of Soil Science, 72, 35–41.
Huang Y L, Dai Z M, Lin J H, Ye H C, Dahlgrene R A, Xu J
M. 2021. Labile carbon facilitated phosphorus solubilization as regulated by
bacterial and fungal communities in Zea mays. Soil Biology and Biochemistry, 163, 108465.
Jaccard P. 1908. Nouvelles recherches sur la
distribution florale. Bulletin de la Société Vaudoise des Sciences Naturelles, 44, 223–270. (in French)
Janssen P J, Van Houdt R, Moors H, Monsieurs P, Morin N,
Michaux A, Benotmane M A, Leys N, Vallaeys T, Lapidus A, Monchy S, Médigue C,
Taghavi S, McCorkle S, Dunn J, van der Lelie D, Mergeay M. 2010. The complete
genome sequence of Cupriavidus metallidurans strain CH34, a
master survivalist in harsh and anthropogenic environments. PLoS ONE, 5, e10433.
Jorquera M, Martínez O, Maruyama F, Marschner P, de la
Luz Mora M. 2008. Current and future biotechnological applications of bacterial
phytases and phytase-producing bacteria. Microbes and Environments, 23, 182–191.
Kamat S S, Williams H J, Raushel F M. 2011.
Intermediates in the transformation of phosphonates to phosphate by bacteria. Nature, 480, 570–573.
Kochian L V. 2012. Plant nutrition: Rooting for more phosphorus. Nature, 488, 466–467.
Kundu B S, Nehra K, Yadav R, Tomar M. 2009. Biodiversity
of phosphate solubilizing bacteria in rhizosphere of chickpea, mustard and
wheat grown in different regions of Haryana. Indian Journal of Microbiology, 49, 120–127.
Kuo S. 1996. Phosphorus. In: Sparks D L, Page A L,
Helmke P A, Loeppert R H, eds., Methods of Soil Analysis Part 3. Chemical
Methods. Soil Science Society of America, American Society of Agronomy,
Madison. pp. 869–919.
Kuppusamy S, Thavamani P, Megharaj M, Lee Y B, Naidu R.
2016. Polyaromatic hydrocarbon (PAH) degradation potential of a new acid
tolerant, diazotrophic P-solubilizing and heavy metal resistant bacterium Cupriavidus sp. MTS-7 isolated from long-term mixed contaminated soil. Chemosphere, 162,
31–39.
Lambers H. 2022. Phosphorus acquisition and utilization
in plants. Annual Review of Plant Biology, 73,
17–42.
Lang M, Christie P, Zhang J L, Li X L. 2018. Long-term
phosphorus application to a maize monoculture influences the soil microbial
community and its feedback effects on maize seedling biomass. Applied Soil Ecology, 128, 12–22.
Lareen A, Burton F, Schäfer P. 2016. Plant root-microbe
communication in shaping root microbiomes. Plant Molecular Biology, 90, 575–587.
Li H Z, Bi Q F, Yang K, Zheng B X, Pu Q, Cui L. 2019. D2O-isotopelabeling
approach to probing phosphate-solubilizing bacteria in complex soil communities
by single-cell Raman spectroscopy. Analytical Chemistry, 91,
2239–2246.
Liang C Y, Tian J, Lam H M, Lim B L, Yan X L, Liao H.
2010. Biochemical and molecular characterization of PvPAP3, a novel purple acid
phosphatase isolated from common bean enhancing extracellular ATP utilization. Plant
Physiology, 152, 854–865.
Lidbury I D E A, Borsetto C, Murphy A R J, Bottrill A,
Jones A M E, Bending G D, Hammond J P, Chen Y, Wellington E M H, Scanlan D J.
2021. Niche-adaptation in plant-associated Bacteroidetes favours
specialisation in organic phosphorus mineralisation. The ISME Journal, 15, 1040–1055.
Long X E, Yao H Y, Huang Y, Wei W X, Zhu Y G. 2018.
Phosphate levels influence the utilization of rice rhizodeposition carbon and
the phosphate-solubilising microbial community in a paddy soil. Soil Biology and Biochemistry, 118, 103–114.
Luo G W, Sun B, Li L, Li M H, Liu M Q, Zhu Y Y, Guo S W,
Ling N, Shen Q R. 2019. Understanding how long-term organic amendments increase
soil phosphatase activities: Insight into phoD- and phoC-harboring
functional microbial populations. Soil Biology and Biochemistry, 139, 107632.
Mander C, Wakelin S, Young S, Condron L, O’Callaghan M.
2012. Incidence and diversity of phosphate-solubilising bacteria are linked to
phosphorus status in grassland soils. Soil Biology and Biochemistry, 44, 93–101.
Marschner P, Crowley D, Yang C H. 2004. Development of
specific rhizosphere bacterial communities in relation to plant species,
nutrition and soil type. Plant and Soil, 261,
199–208.
Martinez-Aguilar L, Diaz R, Pena-Cabriales J J, Santos P
E D L, Dunn M F, Caballero-Mellado J. 2008. Multichromosomal genome structure
and confirmation of diazotrophy in novel plant-associated Burkholderia species. Applied Microbiology and Biotechnology, 74,
4574–4579.
Mora M D L L, Demanet R, Acuña J J, Viscardi S, Jorquera
M, Rengel Z, Duran P. 2017. Aluminum-tolerant bacteria improve the plant growth
and phosphorus content in ryegrass grown in a volcanic soil amended with cattle
dung manure. Applied Soil Ecology, 115, 19–26.
Murphy J, Riley J P. 1962. A modified single solution method
for the determination of phosphate in natural waters. Analytica Chimica Acta, 27, 31–36.
Nannipieri P, Giagnoni L, Landi L, Renella G. 2011. Role
of phosphatase enzymes in soil. In: Bünemann E, Oberson A, Frossard E, eds., Phosphorus
in Action. Springer, Heidelberg. pp. 215–243.
Neal A L, Blackwell M, Akkari E, Guyomar C, Clark I,
Hirsch P R. 2018. Phylogenetic distribution, biogeography and the effects of
land management upon bacterial non-specific acid phosphatase gene diversity and
abundance. Plant and Soil, 427, 175–189.
Neumann G. 2006. Quantitative determination of acid
phosphatase activity in the rhizosphere and on the root surface. In: Luster J,
Finlay R, eds., Handbook of Methods Used in Rhizosphere Research. Swiss
Federal Research Institute WSL, Birmensdorf. pp. 426–427.
Neumann G, Martinoia E. 2002. Cluster roots - an
underground adaptation for survival in extreme environments. Trends in Plant Science, 7, 162–167.
Nilsson R H, Ryberg M, Kristiansson E, Abarenkov K,
Larsson K H, Kõljalg U. 2006. Taxonomic reliability of DNA sequences in public
sequence databases: A fungal perspective. PLoS ONE, 1,
e59.
Peix A, Mateos P F, Rodriguez-Barrueco C,
Martinez-Molina E, Velazquez E. 2001. Growth promotion of common bean (Phaseolus vulgaris L.) by a strain of Burkholderia cepacian under
growth chamber conditions. Soil Biology and Biochemistry, 33, 1927–1935.
Plaxton W C, Lambers H. 2015. Phosphorus: Back to the
roots. In: Plaxton W C, Lambers H, eds., Annual Plant Reviews, Phosphorus Metabolism in Plants. John Wiley & Sons, Hoboken, NJ. pp.
3–15.
Qian Y C, Shi J Y, Chen Y X, Lou L P, Cui X Y, Li P F,
Tang J. 2010. Characterization of phosphate solubilizing bacteria in sediments
from a shallow Eutrophic lake and a wetland: isolation, molecular identification
and phosphorus release ability determination. Molecules, 15,
8518–8533.
Qin L, Jiang H, Tian J, Zhao J, Liao H. 2011. Rhizobia enhance acquisition of phosphorus from different sources by soybean plants. Plant and Soil, 349, 25–36.
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza
P, Peplies J, Glöckner F O. 2013. The SILVA ribosomal RNA gene database
project: improved data processing and web-based tools. Nucleic Acids Research, 41, D590-D596.
Ragot S A, Kertesz M A, Bünemann E K. 2015. PhoD alkaline phosphatase gene diversity in soil. Applied and Environmental Microbiology, 81, 7281–7289.
Richardson A E, Barea J M, McNeill A M, Prigent-Combaret
C. 2009. Acquisition of phosphorus and nitrogen in the rhizosphere and plant
growth promotion by microorganisms. Plant and Soil, 321,
305–339.
Santos P E D L, Bustillos-Cristales R, Caballero-Mellado
J. 2001. Burkholderia, a genus rich in plant-associated nitrogen fixers
with wide environmental and geographic distribution. Applied Microbiology and Biotechnology, 67, 2790–2798.
Sattari S Z, Bouwman A F, Giller K E, van Ittersum M K.
2012. Residual soil phosphorus as the missing piece in the global phosphorus
crisis puzzle. Proceedings of the National Academy of Sciences of the United States of America, 109, 6348–6353.
Sawyer A, Staley C, Lamb J, Sheaffer C, Kaiser T,
Gutknecht J, Sadowsky M J, Rosen C. 2019. Cultivar and phosphorus effects on
switchgrass yield and rhizosphere microbial diversity. Applied Microbiology and Biotechnology, 103, 1973–1987.
Sharma S B, Sayyed R Z, Trivedi M H, Gobi T A. 2013.
Phosphate solubilizing microbes: sustainable approach for managing phosphorus
deficiency in agricultural soils. Springerplus, 2, 587.
Sims J T. 2000. Soil test phosphorus: Bray and Kurtz
P-1. In: Pierzynski G M, ed., Methods of Phosphorus Analysis for Soils, Sediments, Residuals, and Waters. North Carolina State
University, Raleigh. pp. 13–14.
Spohn M, Ermak A, Kuzyakov Y. 2013. Microbial gross
organic phosphorus mineralization can be stimulated by root exudates - A 33P
isotopic dilution study. Soil Biology and Biochemistry, 65, 254–263.
Sugiyama A, Ueda Y, Zushi T, Takase H, Yazaki K. 2014.
Changes in the bacterial community of soybean rhizospheres during growth in the
field. PLoS ONE, 9, e100709.
Tan H, Barret M, Mooij M J, Rice O, Morrissey J P,
Dobson A, Griffiths B, O’Gara F. 2013. Long-term phosphorus fertilisation
increased the diversity of the total bacterial community and the phoD phosphorus mineraliser group in pasture soils. Biology and Fertility of Soils, 49, 661–672.
Tian J H, Kuang X Z, Tang M T, Chen X D, Huang F, Cai Y
X, Cai K Z. 2021. Biochar application under low phosphorus input promotes soil
organic phosphorus mineralization by shifting bacterial phoD gene
community composition. Science of the Total Environment, 779, 146556.
Tian J H, Lu X, Chen Q Q, Kuang X Z, Liang C Y, Deng L
S, Lin D J, Cai K Z, Tian J. 2020. Phosphorus fertilization affects soybean
rhizosphere phosphorus dynamics and the bacterial community in karst soils. Plant and Soil, 475, 137–152.
Uroz S, Calvaruso C, Turpault M P, Frey-Klett P. 2009.
Mineral weathering by bacteria: Ecology, actors and mechanisms. Trends in Microbiology, 17, 378–387.
USEPA. 1971. Phosphorus, All Forms (Colorimetric,
Ascorbic Acid, Single Reagent). U.S. Environmental Protection Agency,
Office of Water, Washington, D. C.
Walkley A, Black I A. 1934. An examination of the
Degtjareff method for determining soil organic matter and a proposed
modification of the chromic acid titration method. Soil Science, 37,
29–38.
Wang C Q, Xue L, Jiao R Z. 2022. Stoichiometric
imbalances and the dynamics of phosphatase activity and the abundance of phoC and phoD genes with the development of Cunninghamia lanceolata (Lamb.) hook plantations. Applied Soil Ecology, 173,
104373.
Wang Q, Wang C, Yu W W, Turak A, Chen D W, Huang Y, Ao J
H, Jiang Y, Huang Z R. 2018. Effects of nitrogen and phosphorus inputs on soil
bacterial abundance, diversity, and community composition in Chinese fir
plantations. Frontiers in Microbiology, 9, 1543.
Wang Y, Zhao X, Guo Z Y, Jia Z J, Wang S Q, Ding K.
2018. Response of soil microbes to a reduction in phosphorus fertilizer in
rice–wheat rotation paddy soils with varying soil P levels. Soil and Tillage Research, 181, 127–135.
Warton D I, Wright S T, Wang Y. 2012. Distance-based
multivariate analyses confound location and dispersion effects. Methods in Ecology and Evolution, 3, 89–101.
Weisskopf L, Heller S, Eberl L. 2011. Burkholderia species are major inhabitants of white lupin cluster roots. Applied and Environmental Microbiology, 77, 7715–7720.
Xiao X, Chen W M, Zong L, Yang J, Jiao S, Lin Y B, Wang
E T, Wei G H. 2017. Two cultivated legume plants reveal the enrichment process
of the microbiome in the rhizocompartments. Molecular Ecology, 26,
1641–1651.
Yamazaki S, Mardani-Korrani H, Kaida R, Ochiai K,
Kobayashi M, Nagano A J, Fujii Y, Sugiyama A, Aoki Y. 2021. Field multi-omics
analysis reveals a close association between bacterial communities and mineral
properties in the soybean rhizosphere. Scientific Reports, 11,
8878.
Yang W N, Yu L, Luo D H, Xiong Z Y, Wang Y Y, Xu M, Wang
Z F, Gao M. 2022. Effect of combined application of biochar with chemical
fertilizer and organic fertilizer on soil phosphatase activity and microbial
community. Environmental Science, 43, 540–549. (in Chinese)
Yu X, Liu X, Zhu T H, Liu G H, Mao C. 2011. Isolation
and characterization of phosphate-solubilizing bacteria from walnut and their
effect on growth and phosphorus mobilization. Biology and Fertility of Soils, 47, 437–446.
Zhang S, Zhou J, Wang G H, Wang X R, Liao H. 2015. The
role of mycorrhizal symbiosis in aluminum and phosphorus interactions in
relation to aluminum tolerance in soybean. Applied Microbiology and Biotechnology, 99, 10225–10235.
Zhao J, Fu J B, Liao H, He Y, Nian H, Hu Y M, Qiu L J,
Dong Y S, Yan X L. 2004. Characterization of root architecture in an applied
core collection for phosphorus efficiency of soybean germplasm. Chinese Science Bulletin, 49, 1611–1620.
Zheng M M, Wang C, Li W X, Guo L, Cai Z J, Wang B R,
Chen J, Shen R F. 2021. Changes of acid and alkaline phosphatase activities in
long-term chemical fertilization are driven by the similar soil properties and
associated microbial community composition in acidic soil. European Journal of Soil Biology, 104, 103312.
Zheng M M, Wang C, Li W X, Song W F, Shen R F. 2019.
Soil nutrients drive function and composition of phoC-harboring
bacterial community in acidic soils of southern China. Frontiers in Microbiology, 10, 2654.
Zhu S N, Chen M H, Liang C Y, Xue Y B, Lin S L, Tian J.
2020. Characterization of purple acid phosphatase family and functional
analysis of GmPAP7a/7b involved in extracellular ATP utilization in
soybean. Frontiers in Plant Science, 11,
661.
Zhuang L B, Li Y, Wang Z S, Yu Y, Zhang N, Yang C, Zeng
Q C, Wang Q. 2020. Synthetic community with six Pseudomonas strains
screened from garlic rhizosphere microbiome promotes plant growth. Microbial Biotechnology, 14, 488–502.
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