|
|
|
|
|
| Genetic characteristics of a wheat founder parent and a widely planted cultivar derived from the same cross |
| CHANG Li-fang*, LI Hui-hui*, WU Xiao-yang, LU Yu-qing, ZHANG Jin-peng, YANG Xin-ming, LI Xiu-quan, LIU Wei-hua, LI Li-hui |
| National Key Facility for Gene Resources and Genetic Improvement/Key Laboratory of Crop Germplasm Utilization, Ministry of Agriculture/Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, P.R.China |
|
|
|
|
Abstract Founder parents have contributed significantly to the improvement of wheat breeding and production. In order to investigate the genetic characteristics of founder parents and widely planted cultivars, Mazhamai (M), Biyumai (B) and six sibling lines (BM1–6) derived from the cross M×B were phenotyped for eight yield-related traits over multiple years and locations and genotyped using the the wheat 90K single nucleotide polymorphism (SNP) assay. BM4 has been used as a founder parent, and BM1 has been widely planted, whereas BM2, 3, 5, and 6 have not been used extensively for breeding or planting in China. Phenotypic comparisons revealed that BM4 and BM1 displayed a better overall performance than the other sibling lines. BM1 showed higher thousand-grain weight than BM4, whereas BM4 exhibited lower coefficient of variation for most of the yield-related traits across different years and locations, indicating that BM4 was widely adaptable and more stable in different environments. SNP analysis revealed that BM4 and BM1 inherited similar proportions of the M genome but are dissimilar to BM2, 3, 5, and 6. Both BM1 and BM4 have specific alleles that differ from the other BM lines, and most of these alleles are concentrated in specific chromosomal regions that are found to associate with favorable QTLs, these SNPs and their surrounding regions may carry the genetic determinants important for the superior performance of the two lines. But BM4 has more genetic diversity than BM1 with more specific alleles and pleiotropic regions, indicating that the genome of BM4 may be more complex than the other sibling lines and has more favorable gene resources. Our results provide valuable information that can be used to select elite parents for wheat and self-pollinating crop breeding.
|
|
Received: 17 March 2017
Accepted:
|
| Fund: This work was supported by grants from the National Basic Research Program of China (973 Program, 2011CB100104) and the National Natural Science Foundation of China (31471174). |
|
Corresponding Authors:
Correspondence LI Li-hui, Tel: +86-10-62186670, E-mail: lilihui@caas.cn; LIU Wei-hua, Tel: +86-10-62176077, E-mail: liuweihua@caas.cn
|
| About author: CHANG Li-fang, E-mail: longclf116@qq.com; LI Hui-hui, E-mail: lihuihui@caas.cn;
* These authors contributed equally to this study. |
Cite this article:
CHANG Li-fang, LI Hui-hui, WU Xiao-yang, LU Yu-qing, ZHANG Jin-peng, YANG Xin-ming, LI Xiu-quan, LIU Wei-hua, LI Li-hui.
2018.
Genetic characteristics of a wheat founder parent and a widely planted cultivar derived from the same cross. Journal of Integrative Agriculture, 17(04): 775-785.
|
| Allen G, Flores-Vergara M, Krasynanski S, Kumar S, Thompson W. 2006. A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. Nature Protocols, 1, 2320–2325.Borojevic K, Borojcvic K. 2005a. Historic role of wheat variety Akakomughi in Southern and Central European wheat breeding programs. Breed Science, 55, 253–256.Borojevic K, Borojcvic K. 2005b. The transfer and history of “reduced height genes” (Rht) in wheat from Japan to Europe. Journal of Heredity, 96, 455–459.Cavanagh C R, Chao S, Wang S, Huang B E, Stephen S, Kiani S, Forrest K, Saintenac C, Brown-Guedira G L, Akhunova A, See D, Bai G, Pumphrey M, Tomar L, Wong D, Kong S, Reynolds M, da Silva M L, Bockelman H, Talbert L, et al. 2013. Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proceedings of the National Academy of Sciences of the United States of America, 110, 8057–8062.Duncan D B. 1955. Multiple range and multiple F test. Biometrics, 11, 1–42.Gale M D, Youssefian S. 1985. Dwarfing genes in wheat. In: Russell G E, ed., Progress in Plant Breeding. 1st ed. Butterworths, London. pp. 1–35.Ge H, Wang L, You G, Hao C, Dong Y, Zhang X. 2009. Fundamental roles of cornerstone breeding lines in wheat reflected by SSR random scanning. Scientia Agricultura Sinica, 42, 1503–1511. (in Chinese)Han J, Zhang L, Li J, Shi L, Xie C, You M, Yang Z, Liu G, Sun Q, Liu Z. 2009. Molecular dissection of core parental cross ‘Triumph/Yanda 1817’ and its derivatives in wheat breeding program. Acta Agronomica Sinica, 35, 1395–1404. (in Chinese)Jia H, Wan H, Yang S, Zhang Z, Kong Z, Xue S, Zhang L, Ma Z. 2013. Genetic dissection of yield-related traits in a recombinant inbred line population created using a key breeding parent in China’s wheat breeding. Theoretical and Applied Genetics, 126, 2123–2139. Kertho A, Mamidi S, Bonman J M, McClean P E, Acevedo M. 2015. Genome-wide association mapping for resistance to leaf and stripe rust in winter-habit hexaploid wheat landraces. PLoS ONE, 10, e0129580. Lee G, Boerma H, Villagarcia M, Zhou X, Carter T, Li Z, Gibbs M. 2004. A major QTL conditioning salt tolerance in S-100 soybean and descendent cultivars. Theoretical and Applied Genetics, 109, 1610–1619.Li L, Li X. 2006. The Descriptors and Data Standard for Wheat. China Agricultural Press, Beijing. (in Chinese)Li X, Xu X, Liu W, Li X, Li L. 2009. Genetic diversity of the founder parent orofen and its progenies revealed by SSR markers. Scientia Agricultura Sinica, 42, 3397–3404. (in Chinese)Li X, Xu X, Yang X, Li X, Liu W, Gao A, Li L. 2012. Genetic diversity among a founder parent and widely grown wheat cultivars derived from the same origin based on morphological traits and microsatellite markers. Crop and Pasture Science, 63, 303–310.Lopes M, Dreisigacker S, Pena R, Sukumaran S, Reynolds M. 2015. Genetic characterization of the wheat association mapping initiative (WAMI) panel for dissection of complex traits in spring wheat. Theoretical and Applied Genetics, 128, 453–464.Lorenzen L, Lin S, Shoemaker R. 1996. Soybean pedigree analysis using map-based molecular markers: Recombination during cultivar development. Theoretical and Applied Genetics, 93, 1251–1260.Lu Y L, Yan J B, Guimarães C T, Taba S, Hao Z F, Gao S B, Chen S J, Li J S, Zhang S H, Vivek B S, Magorokosho C, Mugo S, Makumbi D, Parentoni S N, Shah T, Rong T Z, Crouch J H, Xu Y B. 2009. Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms. Theoretical and Applied Genetics, 120, 93–115.Ma Z, Zhao D, Zhang C, Zhang Z, Xue S, Lin F, Kong Z, Tian D, Luo Q. 2007. Molecular genetic analysis of five spike-related traits in wheat using RIL and immortalized F2 populations. Molecular Genetics and Genomics, 277, 31–42.Maccaferri M, Zhang J, Bulli P, Abate Z, Chao S, Cantu D, Bossolini E, Chen X, Pumphrey M, Dubcovsky J. 2015. A genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in a worldwide collection of hexaploid spring wheat (Triticum aestivum L.). G3 (Bethesda), 5, 449–465.Milne I, Shaw P, Stephen G, Bayer M, Cardle L, Thomas W T B, Flavell A J, Marshall D. 2010. Flapjack-graphical genotype visualization. Bioinformatics, 26, 3133–3134.Naruoka Y, Garland-Campbell K A, Carter A H. 2015. Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.). Theoretical and Applied Genetics, 128, 1083–1101.Pestsova E, Röder M. 2002. Microsatellite analysis of wheat chromosome 2D allows the reconstruction of chromosomal inheritance in pedigrees of breeding programmes. Theoretical and Applied Genetics, 106, 84–91.Reynolds M, Foulkes M, Slafer G, Berry P, Parry M, Snape J, Angus W. 2009. Raising yield potential in wheat. Journal of Experimental Botany, 60, 1899–1918.Russell J, Ellis R, Thomas W, Waugh R, Provan J, Booth A, Fuller J, Lawrence P, Young G, Powell W. 2000. A retrospective analysis of spring barley germplasm development from ‘foundation genotypes’ to currently successful cultivars. Molecular Breeding, 6, 553–568.SAS Institute, SAS 9.1.3. 2000–2004. Help and Documentation, SAS Institute, Cary, NC.Sela H, Ezrati S, Ben-Yehuda P, Manisterski J, Akhunov E, Dvorak J, Breiman A, Korol A. 2014. Linkage disequilibrium and association analysis of stripe rust resistance in wild emmer wheat (Triticum turgidum ssp. Dicoccoides) population in Israel. Theoretical and Applied Genetics, 127, 2453–2463.Sjakste TG, Rashal I, Röder M S. 2003. Inheritance of microsatellite alleles in pedigrees of Latvian barley varieties and related European ancestors. Theoretical and Applied Genetics, 106, 539–549.Sukumaran S, Dreisigacker S, Lopes M, Chavez P, Reynolds M. 2015. Genome-wide association study for grain yield and related traits in an elite spring wheat population grown in temperate irrigated environments. Theoretical and Applied Genetics, 128, 353–363.Tian F, Zhu Z, Zhang B, Tan L, Fu Y, Wang X, Sun C. 2006. Fine mapping of a quantitative trait locus for grain number per panicle from wild rice (Oryza rufipogon Griff.). Theoretical and Applied Genetics, 113, 619–629.Wang S, Wong D, Forrest K, Allen A, Chao S, Huang B E, Maccaferri M, Salvi S, Milner S G, Cattivelli L, Mastrangelo A M, Whan A, Stephen S, Barker G, Wieseke R, Plieske J, International Wheat Genome Sequencing C, Lillemo M, Mather D, Appels R, et al. 2014. Characterization of polyploidy wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnology Journal, 12, 787–796.Wu Q, Chen Y, Zhou S, Fu L, Chen J, Xiao Y, Zhang D, Ouyang S, Zhao X, Cui Y, Zhang D, Liang Y, Wang Z, Xie J, Qin J, Wang G, Li D, Huang Y L, Yu M, Lu P, et al. 2015. High-density genetic linkage map construction and QTL mapping of grain shape and size in the wheat population Yanda 1817×Beinong 6. PLoS ONE, 10, e0118144.Xiao Y, Lu Y, Wen W, Chen X, Xia X, Wang D, Li S, Tong Y, He Z. 2014. Genetic contribution of seedling root traits among elite wheat parent Jing 411 to its derivatives. Scientia Agricultura Sinica, 47, 2916–2926. (in Chinese)Zanke C, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier O, Stiewe G, Hinze M, Beier S, Ganal M W, Röder M S. 2014a. Genetic architecture of main effect QTL for heading date in European winter wheat. Frontiers in Plant Science, 5, 1–12.Zanke C, Ling J, Plieske J, Kollers S, Ebmeyer E, Korzun V, Argillier O, Stiewe G, Hinze M, Neumann K, Ganal M W, Röder M S. 2014b. Whole genome association mapping of Plant height in winter wheat (Triticum aestivum L.). PLoS ONE, 9, e113287.Zegeye H, Rasheed A, Makdis F, Badebo A, Ogbonnaya F C. 2014. Genome-wide association mapping for seeding and adult plant resistance to stripe rust in synthetic hexaploid wheat. PLoS ONE, 8, e105593.Zhang H, Wang H, Qian Y, Xia J, Li Z, Shi Y, Zhu L, Ali J, Gao Y, Li Z. 2013. Simultaneous improvement and genetic dissection of grain yield and its related traits in a backbone parent of hybrid rice (Oryza sativa L.) using selective introgression. Molecular Breeding, 31, 181–194.Zhou J, Zhang Y, Lü H, You A, Zhu L, He G. 2012. Transmission of important chromosomal regions under selection revealed in rice pedigree breeding programs. Molecular Breeding, 30, 717–729.Zhuang Q. 2003. Chinese Wheat Improvement and Pedigree Analysis. China Agricultural Press, Beijing. (in Chinese) |
| No Suggested Reading articles found! |
|
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
| |
Shared |
|
|
|
|
| |
Discussed |
|
|
|
|
