Scientia Agricultura Sinica ›› 2016, Vol. 49 ›› Issue (22): 4408-4418.doi: 10.3864/j.issn.0578-1752.2016.22.013

• SOIL & FERTILIZER·WATER-SAVING IRRIGATION·AGROECOLOGY & ENVIRONMENT • Previous Articles     Next Articles

Responses of Micropopulation in Black Soil of Northeast China to Long-Term Fertilization and Crops

DING Jian-li1,2, JIANG Xin1,2, GUAN Da-wei1,2, MA Ming-chao1,2, ZHAO Bai-suo2, ZHOU Bao-ku3CAO Feng-ming1,2, LI Li1,2, LI Jun1,2   

  1. 1Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081
    2Laboratory of Quality &Safety Risk Assessment for Microbial Products, Ministry of Agriculture, Beijing 100081
    3Institute of    Soil Fertility and Environmental Sources, Heilongjiang Academy of Agricultural Sciences, Harbin 150086
  • Received:2016-05-13 Online:2016-11-16 Published:2016-11-16

Abstract: 【Objective】This experiment was carried out to investigate the characteristics of micropopulation in northeast China black soil under more 35 years of fertilization of two crop seasons. The effects of inorganic fertilizer and manure on the abundance and structure of micropopulation were identified. Black soil micropopulation responses to the interaction of long-term fertilization and crops would be revealed. This study will provide evidences for further enhancing fertilization and tillage method.【Method】Based on a long-term fertilization experiment carried out in Heilongjiang Academy of Agricultural Sciences, four different fertilization treatment samples in soybean and maize growing seasons were selected including samples without fertilizer (CK); manure (M); inorganic fertilizer (NPK); and inorganic fertilizers with manure (MNPK). Letter “m” before treatment represented maize season sample, and letter “s” represented soybean season sample. The Illumina Miseq sequencing and quantitative PCR of 16S rRNA gene were applied to analyze the effects of fertilization and crops on micropopulation in black soil. Correlation analysis was carried out between micropopulation and the soil properties.【Result】The 16S rRNA gene copy numbers in maize growing season (6.32×108-8.83×108/ng DNA) was lower than that in soybean growing season (0.96×109-2.30×109/ng DNA). Alpha diversity in maize growing season (ACE index was between 3 674.58-4 034.84) was lower than that of soybean season (ACE index was between 4 167.47-4 887.36), too. The top phylum was Acidobacteria (24.47%-27.90%) in maize growing season, but it was Proteobacteria (27.78%-34.40%) in soybean growing season. The relative abundances of Bacteroidetes and Actinobacteria were significantly different between two crop growing seasons. The 16S rRNA gene copy numbers in treatment of inorganic fertilizers with manure was greater than that of inorganic fertilizers. Alpha diversity in treatment of inorganic fertilizers with manure was higher than that of inorganic fertilizers (Chao1 index of sMNPK compared with that of sNPK was more 11.89%). The composition of micropopulation in different fertilization treatments of one crop growing season was different. The relative abundances of Alphaproteobacteria in sMNPK and sNPK compared with that of sCK were more 3.31% and 5.24%, Gammaproteobacteria in sMNPK and sNPK were higher 1.72% and 1.20% than that in sCK, and were sensitive to fertilizers. Correlation analysis showed that 16S rRNA gene copy number was positively correlated with soil NO3--N and available K, the diversity index and soil total N, NO3--N, NH4+-N, available P and available K were closely related. 【Conclusion】Results of the research demonstrated that of long-term different fertilizations and different crop growing seasons have effects on microbial richness, α diversity and community structure. Inorganic and organic fertilizers improved the soil pH, slowed down soil acidification, changed microbial structures, increased microbial richness and diversity as well as the metabolic activity of micropopulation.

Key words: fertilizer, crop, microbial community structure, soil chemical properties, high-throughput sequencing, black soil

[1]    Yin C, Fan F, Song A, Cui P, Li T, Liang Y. Denitrification potential under different fertilization regimes is closely coupled with changes in the denitrifying community in a black soil. Applied Microbiology and Biotechnology, 2015, 99: 5719-5729.
[2]    KrashevskaV, Klarner B, Widyastuti R, Maraun M, Scheu S. Impact of tropical lowland rainforest conversion into rubber and oil palm plantations on soil microbial communities.Biology and Fertility of Soils, 2015, 51(6): 697-705.
[3]    乔洁, 毕利东, 张卫建, 沈仁芳, 张斌, 胡锋, 刘艳丽. 长期施用化肥对红壤性水稻土中微生物生物量、活性及群落结构的影响. 土壤,. 2007, 39(5): 772-776.
Qiao J, Bi L D, Zhang W J, Shen R F, Zhang B, Hu F, Liu Y L. Effects of long-term chemical fertilization on soil microbial biomass, activity and community in paddy soil in red soil region of China. Soils, 2007, 39(5): 772-776. (in Chinese )
[4]    Jorquera M A, Martinez O A, Marileo L G, Acuña J J, Saggar S, Mora M L. Effect of nitrogen and phosphorus fertilization on the composition of rhizobacterial communities of two Chilean Andisol pastures. World Jounal of Microbiology Biotechnology, 2014, 30, 99-107.
[5]    Beauregard M S, Hamel C, Atul N, Arnaud M S. Long-term phosphorus fertilization impacts soil fungal and bacterial diversity but not AM fungal community in alfalfa. Microbial Ecology, 2010, 59(2): 379-389.
[6]    Börjesson G, Menichetti L, Kirchmann H, Kätterer T. Soil microbial community structure affected by 53 years of nitrogen fertilisation and different organic amendments. Biology and Fertility of Soils, 2012, 48(3): 245-257.
[7]    Berthrong T, Buckley D H, Drinkwater L E. Agricultural management and labile carbon additions affect soil microbial community structure and interact with carbon and nitrogen cycling. Microbial ecology, 2013, 66(1): 158-170.
[8]    Wei D, Yang Q, Zhang J Z, Wang S, Chen X, Zhang X, Li W Q. Bacterial communities structure and diversity in a black soil as affected by long-term fertilization. Pedosphere, 2008, 18 (5): 582-592.
[9]    Carlson J, Saxena j, Basta N, Hundal L, Busalacchi D, Dick R P. Application of organic amendments to restore degraded soil: Effects on soil microbial properties. Environmental Monitoring and Assessment, 2015, 187(3): 1-15.
[10]   Peacock A D, Mullen M D, Ringelberg D B, Tyler D D, Hedrick D B, Gale P M, White D C. Soil microbial community responses to dairy manure or ammonium nitrate applications. Soil Biology and Biochemistry, 2001, 33: 1011-1019.
[11]   魏巍, 许艳丽, 朱琳, 韩晓增, Li S. 长期施肥对黑土农田土壤微生物群落的影响. 土壤学报, 2013, 50: 372-380.
Wei W, Xu Y L, Zhu L, Han X Z, Li S. Effect of long-term fertilization on soil microbial communities in farmland of black soil. Acta Pedologica Sinica, 2013, 50: 372-380. (in Chinese )
[12]   Liu Y, Shi G, Mao L,Cheng G, Jiang S, Ma X, An L, Du G, Johnson N C, Feng H. Direct and indirect influences of 8 yr of nitrogen and phosphorus fertilization on Glomeromycota in an alpine meadow ecosystem. New Phytologist, 2012, 194: 523-535.
[13]   Zhao J, Ni T, Li Y, Xiong W, Ran W, Shen B, Shen Q, Zhang R. Responses of bacterial communities in arable soils in a rice-wheat cropping system to different fertilizer regimes and sampling times. PloS one, 2014, 9(1): e85301.
[14]   蔡艳, 郝明德, 张丽琼, 臧逸飞, 何晓雁. 应用454测序技术分析种植制度对黑垆土微生物多样性的影响. 作物学报, , 2015, 41(2): 339-346.
Cai Y, Hao M D, Zhang L Q, Zang Y F, He X Y. Effect of cropping systems on microbial diversity in black loessial soil tested by 454 sequencing technology. Acta agronomica sinica, 2015, 41(2): 339-346. (in Chinese )
[15]   Kiely P D, Call D F, Yates M D, Regan J M, Logan B E. Anodic bio?lms in microbial fuel cells harbor low numbers of higher-power-producing bacteria than abundant genera. Applied Microbiology and Biotechnology, 2010, 88(1): 371-380.
[16]   Shokralla S, Spall J L, Gibson J F, Hajibabaei M. Next-generation sequencing technologies for environmental DNA research. Molecular ecology, 2012, 21(8): 1794-1805.
[17]   Zhou J, Guan D, Zhou B, Zhao B, Ma M, Qin J, Jiang X, Chen S, Cao F, Shen D, Li J. Influence of 34-years of fertilization on bacterial communities in an intensively cultivated black soil in Northeast China. Soil Biology and Biochemistry, 2015, 90: 42-51.
[18]   秦杰, 姜昕, 周晶, 马鸣超, 关大伟, 周宝库, 赵百锁, 杜秉海, 李俊. 长期不同施肥黑土细菌和古菌群落结构及主效影响因子分析. 植物营养与肥料学报, 2015, 21(6): 1590-1598.
Qin J, Jiang X, Zhou J, Ma M C, Guan D W, Zhou B K, Zhao B S, Du B H, Li J. Characteristics and driving factors of soil bacterial and archaeal communities under long-term fertilization regimes in black soil. Journal of Plant Nutrition and Fertilizer, 2015, 21(6): 1590-1598. (in Chinese)
[19]   Zhou J, Jiang X, Zhou B, Ma M, Guan D, Li J, Chen S, Cao F, Shen D, Qin J. Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in Northeast China. Soil Biology and Biochemistry, 2016, 95: 135-143.
[20]   Wu M, Qin H, Chen Z, Wu J, Wei W. Effect of long-term fertilization on bacterial composition in rice paddy soil. Biology and Fertility of Soils, 2011, 47(4): 397-405.
[21]   Ding X, Han X, Zhang X, Qiao Y, Liang Y. Continuous manuring combined with chemical fertilizer affects soil microbial residues in a Mollisol. Biology and Fertility of Soils, 2013, 49(4): 387-393.
[22]   Mulvaney R L. Nitrogen-inorganic forms//Bigham J M. Method of Soil Analysis. Part 3. Chemical Methods. Soil Science Society of America, ASA, Madison, Wisconsin, USA, 1996: 1123-1200.
[23]   鲁如坤. 土壤农业化学分析方法. 北京: 中国农业科技出版社, 1999, 431-472.
Lu R K. Soil and Agricultural Chemistry Analysis. Beijing: China Agricultural Science and Technology Press, 1999: 431-472. (in Chinese)
[24]   Peiffer J A, Spor A, Koren O, Jin Z, Tringe S G, Dangl J L, Buckler E S, Ley R E. Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proceeding of the National Academy of Sciences of the United States of America, 2013, 110(16): 6548-6553.
[25]   Chinnadurai C, Gopalaswamy G, Balachandar D. Long term effects of nutrient management regimes on abundance of bacterial genes and soil biochemical processes for fertility sustainability in a semi-arid tropical Alfisol. Geoderma, 2014, 232: 563-572.
[26]   Chen J, Bittinger K, Charson E S, Hoffmann C, Lewis J, Wu G D, Collman R G, Bushman F D, Li H. Associating microbiome composition with environmental covariates using generalized UniFrac distances. Bioinformatics, 2012, 28(16): 2106-2113.
[27]   Yu X, Wu C, Fu Y, Brookes P C, Lu S. Three-dimensional pore structure and carbon distribution of macroaggregates in biochar- amended soil. European Journal of Soil Science, 2016, 67(1): 109-120.
[28]   Han X, Wang R, Liu J, Wang M, Zhou J, Guo W. Effects of vegetationtypes on soil microbial community composition and catabolicdiversity assessed by polyphasic methods in North China. Journal of Environmental Sciences, 2007, 19(10): 1228-1234.
[29]   李晓慧, 韩晓增, 王树起, 王守宇, 彦君. 土壤微生物对不同作物根系活动的响应. 农业系统科学与综合研究, 2010, 26(2): 156-159.
Li X H, Han X Z, Wang S Q, Wang S Y, Yan J. Soil microorganism amount and population as affected by different crop roots. System Sciences and Comprehensive Study in Agriculture, 2010, 26(2): 156-159. (in Chinese)
[30]   WessénE, Hallin S, Philippot L. Differential responses of bacterial and archaeal groups at high taxonomical ranks to soil management. Soil Biology and Biochemistry, 2010, 42(10): 1759-1765.
[31]   Tian W, Wang L, Li Y, Zhuang K, Li G, Zhang J, Xiao X, Xi Y. Responses of microbial activity, abundance, and community in wheat soil after three years of heavy fertilization with manure-based compost and inorganic nitrogen. Agriculture, Ecosystems and Environment, 2015, 213: 219-227.
[32]   Doan T T, Bouvier C, Bettarel Y, Bouvier T, Henry-des-Tureaux T, Janeau J L, Lamballe P, Van Nguyen B, Jouquet P. Influence of buffalo manure, compost, vermicompost and biochar amendments on bacterial and viral communities in soil and adjacent aquatic systems. Applied Soil Ecology, 2014, 73: 78-86.
[33]   Zhao J, Ni T, Li J, Lu Q, Fan f Z, Huang Q, Zhang R, Li R, Shen B, Shen Q. Effects of organic–inorganic compound fertilizer with reduced chemical fertilizer application on crop yields, soil biological activity and bacterial community structure in a rice–wheat cropping system. Applied Soil Ecology, 2016, 99: 1-12.
[1] PENG TingShen, LU JiuYan, WU MeiLin, YAN YuXin, LIU HongZhou, NAN WenBin, QIN XiaoJian, LI Ming, GONG JunYi, LIANG YongShu. QTL Analysis of Yield-Related Traits in Both Huangnuo2# and Changbai7# of Perennial Chinese Rice [J]. Scientia Agricultura Sinica, 2026, 59(7): 1361-1379.
[2] XU YangHaoJun, CHEN LiMing, YANG ShiQi, TANG YiFan, TAN XueMing, ZENG YongJun, PAN XiaoHua, ZENG YanHua. Effects of Long-Term Different Straw Returning Methods on Soil Organic Carbon, Nutrients and Aggregate Formation in Different Soil Layers of Double Cropping Rice Field [J]. Scientia Agricultura Sinica, 2026, 59(7): 1492-1506.
[3] ZHAO ZiJie, SONG Hao, DONG XiaoOu, WAN JianMin. Progress in Transposable Element-Assisted Targeted Insertion of Large DNA Fragments [J]. Scientia Agricultura Sinica, 2026, 59(6): 1141-1156.
[4] LI YongJuan, ZHANG YueTong, WANG YiBo, ZHAO ChangJiang, SONG Jie, CHEN XueLi, YAO Qin. Effects of Biochar Application on the Abundance and Community Composition of Nitrogen-Fixing Microbial nifH Gene in Soybean Rotation and Continuous Cropping Systems [J]. Scientia Agricultura Sinica, 2026, 59(6): 1272-1285.
[5] WEI YuanHui, YU YiHui, LI ZiJun, DING WenJie, TU WenLong, MAO YanLing. Effects of Long-Term Fertilization on Soil Organic Carbon Structure and Carbon-Fixing Bacterial Community Structure in Yellow-Mud Paddy Soil [J]. Scientia Agricultura Sinica, 2026, 59(5): 1020-1033.
[6] LI WenHu, LI HaiFeng, DU YuPeng, DING YuLan, LUO YiNuo, LI YuKe, SHE WenTing, ZHANG Feng, TENG Yu, ZHANG SiQi, HUANG Cui, LI XiaoHan, LIU JinShan, WANG ZhaoHui. Regional Differences in Wheat Zinc Uptake and Translocation Responses to Soil Zinc Fertilization [J]. Scientia Agricultura Sinica, 2026, 59(5): 1034-1047.
[7] YANG Yan, JIANG LiHua, LI Ni, SHI Jing, TAN DeShui, LIU YuMin, ZHAO HuanYu, XU Yu. Water and Fertilizer Management for Reducing Nitrogen Leaching in Facility Vegetable Fields and Achieving Concurrent Yield Increase and Efficiency Improvement [J]. Scientia Agricultura Sinica, 2026, 59(4): 850-861.
[8] MA GuiLan, ZHANG XuYang, LI Wu. Regulatory Role of Guanylate-Binding Protein 2 in Staphylococcus aureus -Induced Macrophage Apoptosis [J]. Scientia Agricultura Sinica, 2026, 59(4): 912-926.
[9] LIU FangDong, SUN Lei, WANG WuBin, ZHAO JinMing, GAI JunYi. Changes of Cropping System and Suggestions on Ecological Cultivation Regions of Soybeans in China [J]. Scientia Agricultura Sinica, 2026, 59(3): 486-498.
[10] LIU MengYang, LIU Jie, CHEN Xiang, WANG QingYun, LUO LaiChao, QI YongBo, TIAN Da, LI JinCai, CHAI RuShan. Effects of Long-Term Straw Return on Distribution of Aggregates and Phosphorus Fractions in Shajiang Black Soil [J]. Scientia Agricultura Sinica, 2026, 59(3): 575-588.
[11] FU LiJin, CHEN GuanWei, XIAO Gong, WANG XiaoFu, PENG Cheng, CHEN XiaoYun, XU JunFeng, CHEN ZiYan, YANG Lei. A Rapid Detection Method for Genetically Modified Soybean Dbn9004 Based on Dnazyme Signal Amplification [J]. Scientia Agricultura Sinica, 2026, 59(2): 239-249.
[12] ZHANG ZhiYong, TAN ShiChao, XIONG ShuPing, MA XinMing, WEI YiHao, WANG XiaoChun. Effects of Annual Water and Nitrogen Optimization on Yield and Nitrogen Migration of Wheat-Maize Rotation System in Irrigation Area of Northern Henan [J]. Scientia Agricultura Sinica, 2026, 59(2): 336-353.
[13] GUO HuiTing, SUN YanWen, NIU YiHeng, LI YaPeng, LI JianHua, XU MingGang. Fertilization Significantly Changed Soil Bacterial Diversity and Dominant Microbial Community in Croplands of Northern China—Meta Analysis [J]. Scientia Agricultura Sinica, 2026, 59(1): 114-128.
[14] LU Hao, ZHANG MingLong, HAN Mei, YAN QingBiao, LI ZhengPeng, YIN Wen, FAN ZhiLong, HU FaLong, CHAI Qiang. Green Manure Returning via Sheep Digest with Nitrogen Fertilizer Reduction are Beneficial to Improve Wheat Yield and Soil Quality at Qinghai-Tibet Plateau [J]. Scientia Agricultura Sinica, 2026, 59(1): 147-160.
[15] DONG GuiChun, WANG ZiHan, WANG ShuShen, LI Jie, HUO XiaoQing, YANG Rui, ZHOU Juan, SHU XiaoWei, LI Yan, CAO LiangJing, WANG ZiRui, YAO YouLi, HUANG JianYe. Technical Approaches for Enhancing Rice Yield and Nitrogen Use Efficiency with Sulfur-Coated Controlled-Release Fertilizers [J]. Scientia Agricultura Sinica, 2026, 59(1): 57-77.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!