Scientia Agricultura Sinica ›› 2014, Vol. 47 ›› Issue (23): 4627-4636.doi: 10.3864/j.issn.0578-1752.2014.23.008

• PLANT PROTECTION • Previous Articles     Next Articles

Molecular Characterization and Analysis of Suppressing RNA Silence of P0 Protein Encoded by Sugarcane yellow leaf virus

LIN Yi-hua1, XIAO Sheng-hua1, LIU Ying-hang1, CHEN Jian-sheng1, FU Hua-ying1, CHEN Ru-kai1, GAO San-ji1,2   

  1. 1Key Laboratory of Sugarcane Biology and Genetic Breeding, Ministry of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002
    2Guangxi Collaborative Innovation Center of Sugarcane Industry, Guangxi University, Nanning 530004
  • Received:2014-05-26 Revised:2014-07-10 Online:2014-12-01 Published:2014-12-01

Abstract: 【Objective】Yellow leaf (YL) disease of sugarcane is one of viral diseases in major sugarcane-producing regions in China and worldwide, causing a serious threat to sugarcane industry. Sugarcane yellow leaf virus (SCYLV), a member of the genus Polerovirus and family Luteoviridae, is the causal agent of YL. The aim of this study is to characterize the conserved regions of P0 protein encoded by SCYLV, and to test its functionality as a RNA silencing suppressor in natural host sugarcane (Saccharum spp. hybrids). The findings will contribute to further investigate the molecular mechanism of SCYLV pathogenesis at RNA silencing level. 【Method】P0 and its two deletion mutants, P0?2-15(15-aa deletion in N terminal) and P0?155-256(102-aa deletion in C terminal) from SCYLV CHN-FJ4 isolate were obtained by RT-PCR and cloned into an expression vector under control of the maize ubiquitin 1 promoter and Agrobacterium nopaline synthase terminator. Each of P0 or its deletion mutant constructs were co-bombarded with the reporter gene coding for enhance yellow fluorescent protein (EYFP) into sugarcane young leaf segments, and transient EYFP expression was quantified using ImageJ software. The Tomato bushy stunt virus-encoded P19 was included as a model suppressor.【Result】Phylogenetic analysis revealed that the CHN-FJ4 isolate clustered with isolates of the BRA genotype and shared 96.1%-98.4% aa identified with them. MEME software online revealed that the P0 proteins contained three significant conserved regions positioned at 1-60, 76-125, and 161-210 aa residues. Besides, eight positive sites were detected using five different approaches under the datamonkey web-server. P0, P0?2-15 and P0?155-256 were co-bombarded with EYFP into sugarcane young leaf segments, respectively. In young leaf segments co-expressing a suppressor P0 or P19, EYFP foci account and EYFP expression level were increased at 48-120 h post-DNA introduction compared with that in the absence of a suppressor. At 120 h post-bombardment, EYFP foci account and of EYFP expression levelincreased by more than 1.6-fold and 4.0-fold, respectively. No significant differences (P>0.05) in EYFP expression were found in presence of P0 or P19. However, EYFP expression was not increased by P0?2-15 or P0?155-256. The reason would be 15-aa deletion in N-terminal or 102-aa deletion in C-terminal of P0 protein impaired and even disabled the function of RNA silencing suppressor.【Conclusion】The P0 RNA silencing suppressor proved to be efficient in enhancing reporter gene expression in transient assay using sugarcane young leaf segments. The conserved regions of P0, 15-aa in N terminal and 102-aa in C terminal, are necessary for the RNA silencing suppressor activity of P0.

Key words: Sugarcane yellow leaf virus, P0 protein, RNA silencing suppressor, EYFP

[1]    Schenck S. Yellow leaf syndrome-a new sugarcane disease. Hawaiian Sugar Planters Association: Annual Report, 1990: 38.
[2]    Wang M Q, Xu D L, Li R, Zhou G H. Genotype identification and genetic diversity of Sugarcane yellow leaf virus in China. Plant Pathology, 2012, 61(5): 986-993.
[3]    Mangwende T, Wang M L, Borth W, Hu J, Moore P H, Mirkov T E, Albert H H. The P0 gene of Sugarcane yellow leaf virus encodes an RNA silencing suppressor with unique activities. Virology, 2009, 384(45): 38-50.
[4]    Scagliusi S M, Lockhart B E L. Transmission, characterization and serology of a luteovirus associated with yellow leaf syndrome of sugarcane. Phytopathology, 2000, 90(2): 120-124.
[5]    Vega J, Scagluisi S M, Ulian E C. Sugarcane yellow leaf disease in Brazil: evidence of association with a Luteovirus. Plant Disease,1997, 81(1): 21-26.
[6]    Pazhouhandeh M, Dieterle M, Marrocco K, Lechner E, Berry B, Brault V, Hemmer O, Kretsch T, Richards K E, Genschik P, Ziegler-Graff V. F-box-like domain in the polerovirus protein P0 is required for silencing suppressor function. Proceedings of the National Academy of Sciences of the United States of America, 2006, 103(6): 1994-1999.
[7]    Bortolamiol D, Pazhouhandeh M, Marrocco K, Genschik P, Ziegler- Graff V. The polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing. Current Biology, 2007, 17(18): 1615-1621.
[8]    霍晓辉, 申永梅, 刘国富, 曹雪松. 马铃薯卷叶病毒P0抑制RNA沉默及其与AGO蛋白的相互作用. 生物技术通报, 2013(3): 70-76.
Huo X H, Shen Y M, Liu G F, Cao X S. P0 of Potato leafroll virus suppress RNA silencing and its interaction with AGO protein. Biotechnology Bulletin, 2013(3): 70-76. (in Chinese)
[9]    ElSayed A I, Komor E. Investigation of ORF0 as a sensitive alternative diagnostic segment to detect Sugarcane yellow leaf virus. Journal of General Plant Pathology, 2012, 78(3): 207-216.
[10]   Lin Y H, Gao S J, Damaj M B, Fu H Y, Chen R K, Mirkov T E. Genome characterization of Sugarcane yellow leaf virus from China reveals a novel recombinant genotype. Archives of Virology, 2014, 159(6): 1421-1429.
[11]   Roth B M, Pruss G J, Vance V B. Plant viral suppressors of RNA silencing. Virus Research, 2004, 102(16): 97-108.
[12]   Burgyán J. Role of silencing suppressor proteins. Methods in Molecular Biology, 2008, 451(46): 69-79.
[13]   Alvarado V, Scholthof H B. Plant responses against invasive nucleic acids: RNA silencing and its suppression by plant viral pathogens. Seminars in Cell & Developmental Biology, 2009, 20(21): 1032-1040.
[14]   Chiera J M, Lindbo J A, Finer J J. Quantification and extension of transient GFP expression by the co-introduction of a suppressor of silencing. Transgenic Research, 2008, 17(21): 1143-1154.
[15]   Dhillon T, Chiera J M, Lindbo J A, Finer J J. Quantitative evaluation of six different viral suppressors of silencing using image analysis of transient GFP expression. Plant Cell Reports, 2009, 28(38): 639-647.
[16]   Gao S J, Damaj M B, Park J W, Beyene G, Buenrostro-Nava M T, Molina J, Wang X F, Ciomperlik J J, Manabayeva S A, Alvarado V Y, Rathore K S, Scholthof H B, Mirkov T E. Enhanced transgene expression in sugarcane by co-expression of virus-encoded RNA silencing suppressors. PloS ONE, 2013, 8(6): e66046.
[17]   BaileyT L, Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers//Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology. Menlo Park, California: AAAI Press, 1994: 28-36.
[18]   Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 2011, 28(10): 2731-2739.
[19]   Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 1987, 4(4): 406-425.
[20] Moonan F, Molina J, Mirkov T E. Sugarcane yellow leaf virus: an emerging virus that has evolved by recombination between luteoviral and poleroviral ancestors. Virology,2000, 269(1): 156-171.
[21]   Smith G R, Borg Z, Lockhart B E L, Braithwaite K S, Gibbs M J. Sugarcane yellow leaf virus: a novel member of the Luteoviridae that probably arose by inter-species recombination. Journal of General Virology, 2000, 81(7): 1865-1869.
[22]   Abu Ahmad Y, Rassaby L, Royer M, Borg Z, Braithwaite K S, Mirkov T E, Irey M S, Perrier X, Smith G R, Rott P. Yellow leaf of sugarcane is caused by at least three different genotypes of Sugarcane yellow leaf virus, one of which predominates on the Island of Reunion. Archives of Virology,2006, 151(7): 1355-1371.
[23]   ElSayed A I, Weig A R, Komor E. Molecular characterization of Hawaiian Sugarcane yellow virus leaf genotypes and their phylogenetic relationship to strains from other sugarcane-growing countries. European Journal of Plant Pathology, 2011, 129(3): 399-412.
[24]   Moonan F, Mirkov T E. Analyses of genotypic diversity among North, South, and Central American isolates of Sugarcane yellow leaf virus: evidence for Colombian origins and for intraspecific spatial phylogenetic variation. Journal of Virology, 2002, 76(3): 1339-1348.
[25]   Chinnaraja C, Viswanathan R, Karuppaiah R, Bagyalakshmi K, Malathi P, Parameswari B. Complete genome characterization of Sugarcane yellow leaf virus from India: Evidence for RNA recombination. European Journal of Plant Pathology, 2013, 135(2): 335-349.
[26]   Wang M Q, Zhou G H. A near-complete genome sequence of a distinct isolate of Sugarcane yellow leaf virus from China, representing a sixth new genotype. Virus Genes, 2010, 41(2): 268-272.
[27]   Abu Ahmad Y, Royer M, Daugrois J H, Costet L, Lett J M, Victoria J I, Girard J C, Rott P. Geographical distribution of four Sugarcane yellow leaf virus genotypes. Plant Disease,2006, 90(9): 1156-1160.
[28]   Abu Ahmad Y, Costet L, Daugrois J H, Nibouche S, Letourmy P, Girard J C, Rott P. Variation in infection capacity and in virulence exists between genotypes of Sugarcane yellow leaf virus. Plant Disease, 2007, 91(3): 253-259.
[29]   Sérémé D, Lacombe S, Konaté M, Bangratz M, Pinel-Galzi A, Fargette D, Traoré A S, Konaté G, Brugidou C. Sites under positive selection modulate the RNA silencing suppressor activity of rice yellow mottle virus movement protein P1. Journal of General Virology, 2014, 95(Pt 1): 213-218.
[30]   Kipreos E T, Pagano M. The F-box protein family. Genome Biology, 2000, 1(5): 3002.1-3002.7.
[31]   Zhuo T, Li Y Y, Xiang H Y, Wu Z Y, Wang X B, Wang Y, Zhang Y L, Li D W, Yu J L, Han C G. Amino acid sequence motifs essential for P0-mediated suppression of RNA silencing in an isolate of Potato leaf roll virus from Inner Mongolia. Molecular Plant-Microbe Interactions, 2014, 27(6): 515-527.
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