[1]Koike S, Yoshitani S, Kobayashi Y, Tanaka K. Phylogenetic analysis of fiber-associated rumen bacterial community and PCR detection of uncultured bacteria. FEMS Microbiology Letters, 2003, 229(1): 23-30. [2]Welkie D G, Stevenson D M, Weimer P J. ARISA analysis of ruminal bacterial community dynamics in lactating dairy cows during the feeding cycle. Anaerobe, 2010, 16(2): 94¬-100.[3]Kocherginskaya S A, Aminov R I, White B A. Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches. Anaerobe, 2001, 7(3): 119-134.[4]Li M, Penner G B, Hernandez-Sanabria E, Oba M, Guan L L. Effects of sampling location and time, and host animal on assessment of bacterial diversity and fermentation parameters in the bovine rumen. Journal of Applied Microbiology, 2009, 107(6): 1924-1934.[5]McAllister T A, Okine E K, Mathison G W, Cheng K J. Dietary, environmental and microbiological aspects of methane production in ruminants. Canadian Journal of Animal Science, 1996, 76(2): 231-243.[6]Tajima K, Arai S, Ogata K, Nagamine T, Matsui H, Nakamura M, Aminov R I, Benno Y. Rumen bacterial community transition during adaptation to high-grain diet. Anaerobe, 2000, 6(5): 273-284.[7]McSweeney C S, Denman S E. Effect of sulfur supplements on cellulolytic rumen micro-organisms and microbial protein synthesis in cattle fed a high fibre diet. Journal of Applied Microbiology, 2007, 103(5): 1757-1765.[8]Patra A K, Saxena J. Dietary phytochemicals as rumen modifiers: a review of the effects on microbial populations. Antonie Van Leeuwenhoek, 2009, 96(4): 363-375.[9]Kim M, Morrison M, Yu Z. Phylogenetic diversity of bacterial communities in bovine rumen as affected by diets and microenvironments. Folia Microbiology, 2011, 56(5): 453-458.[10]Tajima K, Aminov R I, Nagamine T, Matsui H, Nakamura M, Benno Y. Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Applied and Environmental Microbiology, 2001, 67(6): 2766-2774.[11]Petri R M, Forster R J, Yang W. Characterization of rumen bacterial diversity and fermentation parameters in concentrate fed cattle with and without forage. Journal of Applied Microbiology, 2012, 112(6): 1152-1162.[12]Huws S A, Lee M R, Muetzel S M, Scott M B, Wallace R J, Scollan N D. Forage type and fish oil cause shifts in rumen bacterial diversity. FEMS Microbiology Ecology, 2010, 73(2): 396-407.[13]Ercolini D. PCR-DGGE fingerprinting: novel strategies for detection of microbes in food. Journal of Microbiological Methods, 2004, 56(3): 297-314.[14]Bürgmann H, Pesaro M, Widmer F, Zeyer J. A strategy for optimizing quality and quantity of DNA extracted from soil. Journal of Microbiological Methods, 2001, 45(1): 7-20.[15]Huse S M, Dethlefsen L, Huber J A, Welch D M, Relman D A. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genetics, 2008, 4(11): e1000255.[16]王小芬, 王伟东, 高丽娟, 崔宗均. 变性梯度凝胶电泳在环境微生物研究中的应用详解. 中国农业大学学报, 2006, 11(5): 1-7.Wang X F, Wang W D, Gao L J, Cui Z J. Protocols of applification of denaturing gradient gel electrophoresis(DGGE) in studies of environmental microorganism. Journal of China Agricultural University, 2006, 11(5): 1-7. (in Chinese)[17]陈亮明, 张冬林, 李志辉, 陈永华, 肖晶晶, 彭丽梅. PAGE银染和条带回收方法的改进. 中南林业科技大学学报, 2007, 27(6): 163-165.Chen L M, Zhang D L, Li Z H, Chen Y H, Xiao J J, Peng L M. Improvement on PAGE silver staining and band recovering. Journal of Central South University of Forestry and Technology, 2007, 27(6): 163-165. (in Chinese)[18]Larue R, Yu Z T, Pa V. A novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environmental Microbiology, 2005, 7(4): 530-543.[19]McSweeney C S, Denman S E, Wright A D G, Yu Z. Application of recent DNA⁄ RNA-based techniques in rumen ecology. Asian-Australasian Journal of Animal Sciences, 2007, 20(2): 283-294.[20]Edwards J E, Bequette B J, McKain N, McEwan N R, Wallace R J. Influence of flavomycin on microbial numbers, microbial metabolism and gut tissue protein turnover in the digestive tract of sheep. British Journal of Nutrition, 2005, 94(1): 64-70.[21]Mackie R I, Aminov R I, Hu W, Klieve A C, Ouwerkerk D, Sundset M A, Kamagata Y. Ecology of uncultivated Oscillospira species in the rumen of cattle, sheep, and reindeer as assessed by microscopy and molecular approaches. Applied and Environmental Microbiology. 2003, 69(11): 6808-6815.[22]Sadet S, Martin C, Meunier B, Morgavi D P. PCR-DGGE analysis reveals a distinct diversity in the bacterial population attached to the rumen epithelium. Animal, 2007, 1(7): 939-944.[23]Muyzer G, de Waal E C, Uitterlinden A G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology, 1993, 59(3): 695-700.[24]Nagaraja T G, Titgemeyer E C. Ruminal acidosis in beef cattle: the current microbiological and nutritional outlook. Journal of Dairy Science, 2007, 90(Suppl. 1): E17-E38.[25]Zhou M, Hernandez-Sanabria E, Guan L L. Characterization of rumen methanogenic community variation under different diets and host feed efficiencies using PCR-DGGE analysis. Applied and Environmental Microbiology, 2010, 76(12): 3776-3786.[26]de Menezes A B, Lewis E, O’Donovan M, O’Neill B F, Clipson N, Doyle E M. Microbiome analysis of dairy cows fed pasture or total mixed ration diets. FEMS Microbiology Ecology, 2011, 78(2): 256-265. [27]Popova M, Martin C, Eugène M, Mialon M M, Doreau M, Morgavi D P. Effect of fibre- and starch-rich finishing diets on methanogenic rchaea diversity and activity in the rumen of feedlot bulls. Animal Feed Science and Technology, 2011, 166/167(113): 113-121.[28]Wanapat M, Cherdthong A. Use of real-time PCR technique in studying rumen cellulolytic bacteria population as affected by level of roughage in swamp buffalo. Current Microbiology, 2009, 58(4): 294-299.[29]Fernando S C, Purvis H T, Najar F Z, Sukharnikov L O, Krehbiel C R, Nagaraja T G, Roe B A, DeSilva U. Rumen microbial population dynamicsduring adaptation to a high-grain diet. Applied and Envirommental Microbiology, 2010, 76(22): 7482-7490.[30]冯薇, 王加启, 刘开朗, 卜登攀, 李旦, 赵圣国, 杨开伦. 运PCR—DGGE分析比较瘤胃中不同饲料固相粘附微生物区系. 畜牧兽医学报, 2010, 41(12): 1556-1562.Feng W, Wang J Q, Liu K L, Bu D P, Li D, Zhao S G, Yang K L. Comparison of microbial communities adherent to three kinds of feeds in dairy cows by PCR-DGGE. Acta Veterinaria et Zootechnica Sinica, 2010, 41(12): 1556-1562. (in Chinese)[31]Shaw C. Analysis of rumen bacterial populations in dairy cattle fed different forages[D]. Ohio: The Ohio State University, 2010.[32]Kong Y, Teather R, Forster R. Composition, spatial distribution, and diversityof the bacterial communities in the rumen of cows fed different forages. FEMS Microbiology Ecology, 2010, 74(3): 612-622.[33]Hobson P N, Stewart C S. The Rumen Microbial Ecosystem. London: Crown House, 1997.[34]Carberry C A, Kenny D A, Han S, McCabe M S, Waters S M. Effect of phenotypic residual feed intake and dietary forage content on the rumen microbial community of beef cattle. Applied and Environmental Microbiology, 2012, 78(14): 4949-4958. |