中国农业科学 ›› 2026, Vol. 59 ›› Issue (10): 2088-2108.doi: 10.3864/j.issn.0578-1752.2026.10.003

• 作物遗传育种·种质资源·分子遗传学 • 上一篇    下一篇

黍子NF-Y基因家族的鉴定及PmNF-YA8的功能分析

宋裕祯1(), Bheel Chander Kumar1, 张颖星1, 王跃1, Santra Dipak Kumar2, 曹晓宁1,3(), 王瑞云1()   

  1. 1 山西农业大学农学院, 中国山西太谷 030801
    2 内布拉斯加大学林肯分校农艺系小宗粮豆研究与推广中心, 美国内布拉斯加州斯克茨布拉夫 69361
    3 山西农业大学农业基因资源研究中心, 中国太原 030031
  • 收稿日期:2025-10-20 接受日期:2026-01-19 出版日期:2026-05-16 发布日期:2026-05-20
  • 通信作者:
    王瑞云,E-mail:
    曹晓宁,E-mail:
  • 联系方式: 宋裕祯,E-mail:yuzhen_song@163.com。
  • 基金资助:
    现代农业产业技术体系建设专项(CARS-06-15.5-A16); 山西省现代农业产业技术体系建设(杂粮)专项资金(2026CYJSTX03-12); 山西省重点研发项目(2022ZDYF110)

Identification of the NF-Y Gene Family and Functional Analysis of PmNF-YA8 in Broomcorn Millet

SONG YuZhen1(), BHEEL Chander Kumar1, ZHANG YingXing1, WANG Yue1, SANTRA Dipak Kumar2, CAO XiaoNing1,3(), WANG RuiYun1()   

  1. 1 Agronomy College, Shanxi Agricultural University, Taigu 030801, Shanxi, China
    2 Panhandle Research & Extension Center, Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Scottsbluff 69361, Nebraska, USA
    3 Center for Agricultural Genetic Resources Research, Shanxi Agricultural University, Taiyuan 030031, China
  • Received:2025-10-20 Accepted:2026-01-19 Published:2026-05-16 Online:2026-05-20

摘要:

【目的】核因子Y(nuclear factor Y,NF-Y)转录因子通过特异性结合靶基因启动子区CCAAT元件调控表达,在植物应对干旱、盐碱等非生物胁迫中起作用。黍子抗旱耐瘠,是盐碱地、边际土地不可或缺的作物,解析黍子NF-Y基因家族功能,为丰富作物耐逆遗传理论、推动抗旱育种实践提供依据。【方法】利用黍子基因组数据和生物信息学方法,鉴定NF-Y家族成员,分析理化性质,构建系统进化树,分析保守结构域、基因结构和启动子顺式作用元件。用实时荧光定量PCR鉴定基因在不同部位的表达,并通过拟南芥转基因功能验证PmNF-YA8在干旱胁迫下的表达特征。【结果】基于黍子参考基因组鉴定出33个PmNF-Y基因,包括11个PmNF-YA、12个PmNF-YB和10个PmNF-YC亚家族成员,蛋白长度为122—571个氨基酸,等电点为4.74—10.19,分子量为13.58—59.17 kDa。染色体定位显示,33个基因(PmNF-YA1PmNF-YA11PmNF-YB1PmNF-YB12PmNF-YC1PmNF-YC10)分布于15条染色体。在PmNF-Y家族成员的启动子区域预测到2种干旱胁迫响应元件。黍子与3种植物(拟南芥、水稻和玉米)的NF-Y直系同源基因对分别为3、47和59个。RT-qPCR分析表明,PmNF-Y基因在根、茎、叶等组织中广泛表达。干旱胁迫后,PmNF-YA8在小红黍和宁糜9号中均上调表达。经300 mmol·L-1甘露醇胁迫后,过表达PmNF-YA8株系平均根长(14.03 mm)大于野生型拟南芥(9.07 mm),且MDA增幅(55.23%—57.12%)低于野生型(100.78%),SOD、POD活性分别增加24.28%—27.43%和163.57%—341.33%,Pro含量(151.31—175.14 μg·g-1)高于野生型(143.78 μg·g-1)。【结论】在黍子中鉴定出33个NF-Y家族成员,从黍子中克隆了PmNF-YA8,异源表达PmNF-YA8通过调节胁迫相关基因的表达,增强了拟南芥植株对干旱胁迫的耐受性,可作为调控黍子抗旱性的重要候选基因。

关键词: 黍子, NF-Y, PmNF-YA8, 表达模式, 干旱胁迫

Abstract:

【Objective】Nuclear factor Y (NF-Y) transcription factors regulate the expression of target genes by specifically binding to the CCAAT element in the promoter region of target genes, and play a role in plant responses to abiotic stresses such as drought and salinity. Broomcorn millet exhibits strong tolerance to drought and barrenness, serving as an indispensable crop for saline-alkali and marginal lands. Systematic elucidation of the functions of the NF-Y gene family in broomcorn millet will provide a theoretical basis for enriching the genetic theory of crop stress tolerance and promoting drought-resistant breeding practices.【Method】Genome data of broomcorn millet and bioinformatics approaches were employed to identify NF-Y family members, physicochemical properties, gene structures, construct phylogenetic trees, and predict conserved domains as well as cis-acting elements in promoters. Reverse Transcription Quantitative PCR (RT-qPCR) was used to determine the expression of these genes in different plant tissues, and the expression characteristics of PmNF-YA8 under drought stress were verified through transgenic functional validation in Arabidopsis thaliana.【Result】Based on the proso millet reference genome, 33 PmNF-Y genes (including 11 PmNF-YA, 12 PmNF-YB, and 10 PmNF-YC) were identified, encoding proteins with lengths of 122-571 amino acids, isoelectric points of 4.74-10.19, and molecular weights of 13.58-59.17 kDa. Chromosomal localization analysis showed that these 33 genes (PmNF-YA1-PmNF-YA11, PmNF-YB1-PmNF-YB12, and PmNF-YC1-PmNF-YC10) were distributed across 15 chromosomes. Two types of drought stress-responsive elements were predicted in the promoter regions of PmNF-Y family members. A total of 3, 47, and 59 NF-Y orthologous gene pairs were identified between broomcorn millet and three other plant species (Arabidopsis thaliana, rice, and maize), respectively. RT-qPCR analysis revealed that PmNF-Y genes were widely expressed in tissues such as roots, stems, and leaves. The expression level of PmNF-YA8 was up-regulated in both XHS and NM9 varieties after drought stress. Transgenic Arabidopsis thaliana lines overexpressing PmNF-YA8 were generated, and phenotypic and physiological analyses showed that under 300 mmol·L-1 mannitol stress, the average root length of transgenic plants (14.03 mm) was longer than that of wild-type (WT) plants (9.07 mm). Additionally, transgenic plants had a lower MDA increase range (55.23%-57.12%) compared with WT plants (100.78%), with SOD and POD activities increased by 24.28%-27.43% and 163.57%-341.33%, respectively, and Pro content (151.31-175.14 μg·g-1) higher than that of WT plants (143.78 μg·g-1).【Conclusion】A total of 33 NF-Y family members were identified in broomcorn millet. The PmNF-YA8 gene was cloned from broomcorn millet and heterologously transformed into Arabidopsis thaliana. Its heterologous expression enhanced the drought stress tolerance of Arabidopsis thaliana plants by regulating the expression of stress-related genes, thus making PmNF-YA8 a key candidate gene for modulating drought tolerance in broomcorn millet.

Key words: broomcorn millet, NF-Y, PmNF-YA8, expression pattern, drought stress