[1] 杨绍华. 植物QTL研究进展. 中国农学通报, 2011, 27(3): 226-231.Yang S H. Development of plant QTL analysis. Chinese Agricultural Science Bulletin, 2011, 27(3): 226-231. (in Chinese)[2] 金 亮, 包劲松. 植物性状-标记关联分析研究进展. 分子植物育种, 2009, 7(6): 1048-1063. Jin L, Bao J S. Progress on the trait-marker association analysis in plants. Molecular Plant Breeding, 2009, 7(6): 1048-1063. (in Chinese)[3] Mackay I, Powell W. Methods for linkage disequilibrium mapping in crops. Trends in Plant Science, 2007, 12(2): 57-63.[4] 杨小红, 严建兵, 郑艳萍, 余建明, 李建生. 植物数量性状关联分析研究进展, 作物学报, 2007, 33(4): 523-530. Yang X H, Yan J B, Zheng Y P, Yu J M, Li J S. Reviews of association analysis for quantitative traits in plants. Acta Agronomica Sinica, 2007, 33(4): 523-530. (in Chinese)[5] Flint-Garcia S A, Thornsberry J M, Buckler E S. Structure of linkage disequilibrium in plants. Annual Review of Plant Biology, 2003, 54: 357-374.[6] Yu J M, Buckler E S. Genetic association mapping and genome organization of maize. Current Opinion Biotechnology, 2006, 17: 155-160.[7] Meuwissen T H E, Goddard M E. Fine mapping of quantitative trait loci using linkage disequilibria with closely linked marker loci. Genetics, 2000, 155: 421-430.[8] Palaisa K A, Morgante M, Williams M, Rafalski A. Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci. The Plant Cell, 2003, 15: 1795-1806.[9] Thornsberry J M, Goodman M M, Doebley J, Kresovich S, Nielsen D, Buckler E S. Dwarf8 polymorphisms associate with variation in flowering time. Nature Genetics, 2001, 28: 286-289.[10] Wilson L M, Whitt S R, Ibanez A M, Rocheford T R, Goodman M M, Buckler E S. Dissection of maize kernel composition and starch production by candidate gene associations. The Plant Cell, 2004, 16: 2719-2733.[11] Harjes C E, Rocheford T R, Bai L, Brutnell T P, Kandianis C B, Sowinski S G, Stapleton A E, Vallabhaneni R, Williams M, Wurtzel E T, Yan J, Buckler E S. Natural genetic variation in lycopene epsilon cyclase tapped for maize biofortification. Science, 2008, 319: 330-333. [12] Breseghello F, Sorrells M E. Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics, 2006, 172: 1165-1177. [13] Le Gouis J, Bordes J, Ravel C, Heumez E, Faure S, Praud S, Galic N, Remoué C, Balfourier F, Allard V, Rousset M. Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheat. Theoretical and Applied Genetics, 2012, 124(3): 597-611.[14] Olsen K M, Halldorsdottir S S, Stinchcombe J R, Weinig C, Schmitt J, Purugganan M D. Linkage disequilibrium mapping of Arabidopsis CRY2 flowering time alleles. Genetics, 2004, 167: 1361-1369.[15] Aranzana M J, Kim S, Zhao K, Bakker E, Horton M, Jakob K, Lister C, Molitor J, Shindo C, Tang C, Toomajian C, Traw B, Zheng H, Bergelson J, Dean C, Marjoram P, Nordborg M. Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes. PLoS Genetics, 2005, 1: e60. [16] Agrama H A, Eizenga G C, Yan W. Association mapping of yield and its components in rice cultivars. Molecular Breeding, 2007, 19: 341-356.[17] Zeven A, Zhukovsky P. Dictionary of cultivated plants and their centers of diversity. Wageningen, PUDOC; 1975. [18] Zhang X R, Zhao Y Z, Cheng Y, Feng X Y, Guo Q Y, Zhou M D, Hodgkin T. Establishment of sesame germplasm core collection in China. Genetic Resources and Crop Evolution, 2000, 47: 273-279.[19] Zhang Y X, Zhang X Y, Hua W, Wang L H, Che Z. Analysis of genetic diversity among indigenous landraces from sesame (Sesamum indicum L.) core collection in China as revealed by SRAP and SSR markers. Genes and Genomics, 2010, 32: 207-215.[20] Khanuja S P, Shasany A K, Darokar M P, Kumar S. Rapid isolation of DNA from dry and fresh samples of plants producing large amounts of secondary metabolites and essential oils. Plant Molecular Biology Reporter, 1999, 17: 1-7.[21] Li G, Quiros C F. Sequence-related amplified polymorphism (SRAP) a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica. Theoretical and Applied Genetics, 2001, 103: 455-461.[22] Dixit A, Jin M H, Chung J W, Yu J W, Chung H K, Ma K H, Park Y J, Cho E G. Development of polymorphic microsatellite markers in sesame (Sesamum indicum L.). Molecular Ecology Notes, 2005, 5: 736-738.[23] Wei W L, Qi X Q, Wang L H, Zhang Y X, Hua W, Li D H, Lv H X, Zhang X R. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. BMC Genomics, 2011, 12: 451-463.[24] Hernan E L, Petr K. Genetic relationship and diversity in a sesame (Sesamum indicum L.) germplasm collection using amplified fragment length polymorphism (AFLP). BMC Genetics, 2006, 7: 1-10.[25] Liu K, Muse S V. PowerMarker: Integrated analysis environment for genetic marker data. Bioinformatics, 2005, 21: 2128-2129.[26] Pritchard J K, Wen W. Documentation for STRUCTURE Software: Version 2.3. Chicago: The University of Chicago Press, 2003.[27] Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Molecular Ecology, 2005, 14: 2611-2620.[28] Excoffier L, Laval G, Schneider S. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics, 2005, 1: 47-50.[29] Yu J, Pressoir G, Briggs W H, Bi I V, Yamasaki M, Doebley J F, McMullen M D, Gaut B S, Nielsen D M, Holland J B, Kresovich S, Buckler E S. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nature Genetics, 2006, 38: 203-208. [30] Malosetti M, van der Linden C G, Vosman B, van Eeuwijk F A. A mixed-model approach to association mapping using pedigree information with an illustration of resistance to Phytophthora infestans in potato. Genetics, 2007, 175: 879-889.[31] Jung M, Ching A, Bhattramakki D, Dolan M, Tingey S, Morgante M, Rafalski A. Linkage disequilibrium and sequence diversity in a 500-kbp region around the adh1 locus in elite maize germplasm. Theoretical and Applied Genetics, 2004, 109(4): 681-689. [32] Wang M L, Zhu C S, Barkley N A, Chen Z B, Erpelding J E, Murray S C, Tuinstra M R, Tess T O, Pederson G A, Yu J M. Genetic diversity and population structure analysis of accessions in the US historic sweet sorghum collection. Theoretical and Applied Genetics, 2009, 120: 13-23.[33] Wen W W, Mei H W , Feng F J, Yu S B, Huang Z C, Wu J H, Chen L, Xu X Y, Luo L J. Population structure and association mapping on chromosome 7 using a diverse panel of Chinese germplasm of rice (Oryza sativa L.). Theoretical and Applied Genetics, 2009, 119: 459-470.[34] Li X B, YanW G, Agrama H, Jia L M, Shen X H, Jackson A, Moldenhauer K, Yeater K, McClun A G, Wu D X. Mapping QTLs for improving grain yield using the USDA rice mini-core collection. Planta, 2011, 234(2): 347-361.[35] Jin L, Lu Y, Xiao P, Sun M, Corke H, Bao J S. Genetic diversity and population structure of a diverse set of rice germplasm for association mapping. Theoretical and Applied Genetics, 2010, 121: 475-487.[36] Li Y H, Smulders M J M, Chang R Z, Qiu L J. Genetic diversity and association mapping in a collection of selected Chinese soybean accessions based on SSR marker analysis. Conservation Genetics, 2011, 12: 1145-1157.[37] Wang J, McClean P E, Lee R, Goos R J, Helms T. Association mapping of iron deficiency chlorosis loci in soybean (Glycine max L. Merr.) advanced breeding lines. Theoretical and Applied Genetics, 2008, 116: 777-787.[38] Zhang J A, Hao C Y, Ren Q, Chang X P, Liu G R, Jing R L. Association mapping of dynamic developmental plant height in common wheat. Planta, 2011, 234(5): 891-902.[39] Zhao W, Park E J, Chung J W, Park Y J, Chung I M, Ahn J K, Kim G H. Association analysis of the amino acid contents in rice. Journal of Integrative Plant Biology, 2009, 51(12): 1126-1137.[40] Shi C, Navabi A, Yu K F. Association mapping of common bacterial blight resistance QTL in Ontario bean breeding populations. BMC Plant Biology, 2011, 11: 52-62.[41] Shao Y F, Jin L, Zhang G, Lu Y, Shen Y, Bao J S. Association mapping of grain color, phenolic content, flavonoid content and antioxidant capacity in dehulled rice. Theoretical and Applied Genetics, 2011, 122: 1005-1016.[42] Jestin C, Lode M, Vallée P, Domin C, Falentin C, Horvais R, Coedel S, Manzanares-Dauleux M J, Delourme R. Association mapping of quantitative resistance for Leptosphaeria maculans in oilseed rape (Brassica napus L.). Molecular Breeding, 2011, 27: 271-287.[43] 王荣焕, 王天宇, 黎 裕. 关联分析在作物种质资源分子评价中的应用. 植物遗传资源学报, 2007, 8(3): 366-372.Wang R H, Wang T Y, Li Y. Application of association analysis in molecular evaluation of crop germplasm resources. Journal of Plant Genetic Resources, 2007, 8(3): 366-372. (in Chinese) |