Scientia Agricultura Sinica

Previous Articles     Next Articles

Development of SCARs from AFLP Markers Linked to Resistance to Maize Rough Dwarf Virus (MRDV) Using Bulked Segregant Analysis in Maize

SHILi-yu1;2;LIXin-hai2;XIEChuan-xiao2;HAOZhuan-fang2;WENGJian-feng2;ZHANGShi-huang2;PANGuang-tang1   

  1. 1、Maize Research Institute, Sichuan Agricultural University, Ya’an 625014, Sichuan;
    2、Institute of Crop Sciences, Chinese Academy of Agricultural Sciences/National Key Facility of Crop Gene Resources and Genetic Improvement, Beijing 100081
  • Received:2010-09-05 Online:2011-05-05 Published:2010-10-20

Abstract: 【Objective】Developing and cultivating resistant hybrids is an effective approach to control MRDD. Marker development and markers-assisted selection (MAS) is an efficient way for MRDD-resistant breeding.【Method】On the basis of MRDD resistance evaluation of 152 maize inbred lines, resistant and susceptible DNA bulks were composed by using genomic DNAs of 10 resistant and 10 susceptible inbred lines, respectively. Polymorphic AFLP markers were screened between two bulks and then transformed into SCAR (sequence characterized amplified region) markers. Identification of correlation between the SCAR markers and MRDD resistance was carried out in 152 inbred lines.【Result】SCAR69 and SCAR74 were validated to be highly associated with MRDD resistance.【Conclusion】SCAR69 and SCAR74 could be used for MAS of MRDD resistance in maize.

Key words: maize (Zea mays L.) , maize rough dwarf virus , bulked segregant analysis , amplified fragment length polymorphism , sequence characterized amplified region

[1]Harpaz I . Needle transmission of a new maize virus. Nature, 1959, 184: 77-78.
[2]Dovas C I, Eythymiou K, Katis N I. First report of Maize rough dwarf virus (MRDV) on maize crops in Greece. Plant Pathology, 2004, 53: 238.
[3]Louie R, Abt J J. Mechanical transmission of maize rough dwarf virus. Maydica, 2004, 49: 231-240.
[4]郭启唐, 李钊敏, 董哲生. 晋南玉米粗缩病发生与品种抗病性的关系. 山西农业科学, 1995, 23(2): 41-44.
Guo Q T, Li Z M, Dong Z S. The relationship between maize rough dwarf disease occurrence and resistance of varieties. Journal of Shanxi Agricultural Sciences, 1995, 23(2): 41-44. (in Chinese)
[5]郭启唐, 李钊敏, 董哲生. 玉米粗缩病及自交系抗病性观察与分析 植物保护, 1995(1): 21-23.
Guo Q T, Li Z M, Dong Z S. The observation and analysis of varietal resistance of maize rough dwarf virus disease. Plant Protection, 1995(1): 21-23. (in Chinese)
[6]吉贞芳, 王安乐, 李建勋, 董喜才, 陈朝辉. 玉米粗缩病发生危害与播期和品种的关系. 植物保护, 1998, 24(4): 27-29.
Ji Z F, Wang A L, Li J X, Dong X C, Chen Z H. The relationships between maize rough dwarf disease occurrence and varieties and sowing date. Plant Protection, 1998, 24(4): 27-29. (in Chinese)
[7]马 侠, 崔德周, 刘怀华, 刘 旭, 宁丽华, 陈化榜. 玉米抗粗缩病基因STS分子标记的筛选. 玉米科学, 2010, 18(3): 61-64, 67.
Ma X, Cui D Z, Liu H H, Liu X, Ning L H, Chen H B. Development of STS-PCR markers for maize rough dwarf virus resistanct genes. Journal of Maize Sciences, 2010, 18(3): 61-64, 67. (in Chinese)
[8]李常保, 宋建成, 姜丽君, 杨春英, 王启柏, 王守义. 玉米抗粗缩病病毒(MRDV)基因的RAPD标记及其辅助选择效果研究. 作物学报, 2002, 28(4): 564-568.
Li C B, Song J C, Jiang L J, Yang C Y, Wang Q B, Wang S Y. Identification of RAPD markers linked to MRDV resistance genes and their application to marker-assisted selection. Acta Agronomica Sinica, 2002, 28(4): 564-568. (in Chinese)
[9]邸垫平, 苗洪芹, 路银贵, 田兰芝. 玉米抗粗缩病接种鉴定方法研究初报. 河北农业大学学报, 2005, 28(2): 76-78, 103.
Di D P, Miao H Q, Lu Y G, Tian L Z. Study on the method of inoculation and identification for the resistance of maize to maize rough dwarf virus. Journal of Agricultural University of Hebei, 2005, 28(2): 76-78, 103. (in Chinese)
[10]CIMMYT Applied Molecular Genetics Laboratory. Laboratory Protocol. CIMMYT. Mexico, 1998.
[11]Lalitha S. Primer Premier 5. Biotech software & internet report, 2000, 1(6): 270-272.
[12]Stam P. Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. The Plant Journal, 1993, 3(5): 739-744.
[13]Stam P, van Ooijen J W. JOINMAP (tm) version 3.0: Software for the calculation of genetic linkage maps. CPRO-DLO Wagerningen, The Netherlands, 1995.
[14]Voorrips R E. MapChart: Software for the graphical presentation of linkage maps and QTLs. The Journal of Heredity, 2002, 93(1): 77-78.
[15]王安乐, 王娇娟, 陈朝辉, 邵新胜, 卫国英. 网棚控制灰飞虱传毒感病鉴定法. 山西农业科学, 1998, 26(2): 68-69.
Wang A L, Wang J J, Chen Z H, Shao X S, Wei G Y. The evaluation method of maize rough dwarf virus resistance using net house. Journal of Shanxi Agricultural Sciences, 1998, 26(2): 68-69. (in Chinese)
[16]左示敏, 殷跃军, 张亚芳, 陈宗祥, 潘雪彪. 植物数量抗病基因克隆及其抗性机理的研究进展. 分子植物育种, 2006, 4(5): 603-613.
Zuo S M, Yin Y J, Zhang Y F, Chen Z X, Pan X B. Progress on cloning of quantitative disease resistance gene in plant and studying its possible resistance mechanism. Molecular Plant Breeding, 2006, 4(5): 603-613. (in Chinese)
[17]方宣钧, 吴为人, 唐纪良. 作物DNA标记辅助育种. 北京: 科学出版社, 2002: 19.
Fang X J, Wu W R, Tang J L. Molecular Marker-Assisted Breeding in Crop. Beijing: Science Press, 2002: 19. (in Chinese)
[18]Shi L, Li X, Hao Z, Xie C, Ji H, Lü X, Zhang S, Pan G. Comparative QTL mapping of resistance to gray leaf spot in maize based on bioinformatics. Agricultural Sciences in China, 2007, 6(12): 1411-1419.
[19]Ellis J, Dodds P, Pryor T. Structure, function and evolution of plant disease resistance genes. Current Opinion in Plant Biology, 2000, 3(4): 278-284.
[20]McDowell J M, Dhandaydham M, Long T A, Aarts M G, Goff S, Holub E B, Dangl J L. Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the Rpp8 locus of Arabidopsis. The Plant Cell, 1998, 10(11): 1861-1874.
[21]Gassmann W, Hinsch M E, Staskawicz B J. The Arabidopsis RPS4, bacterial-resistance gene is a member of the TIR-NBS-LRR family of disease-resistance gene. The Plant Journal, 1999, 20(3): 265-277.
[22]Wang Z X, Yano M, Yamanouchi U, Iwamoto M, Monna L, Hayasaka H, Katayose Y, Sasaki T. The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. The Plant Journal, 1999, 19(1): 55-64.
[23]Yoshimura S, Yamanouchi U, Katayose Y, Toki S, Wang Z X, Kono I, Kurata N, Yano M, Iwata N, Sasaki T. Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proceedings of the National Academy of Sciences of the USA, 1998, 95: 1663-1668.
[24]Tai T H, Dahlbeck D, Clark E T, Gajiwala P, Pasion R, Whalen M C, Stall R E, Staskawicz B J. Expression of the Bs2 pepper gene confers resistance to bacterial spot disease in tomato. Proceedings of the National Academy of Sciences of the USA, 1999, 96: 14153-14158.
[25]Ori N, Eshed Y, Paran I, Presting G, Aviv D, Tanksley S, Zamir D, Fluhr R. The I2C family from the WiIt disease resistance locus 12 belongs to the nucleotide binding, leucine-rich repeat superfamily of plant resistance genes. The Plant Cell, 1997, 9(4): 521-532.
[26]Salmeron J M, Oldroyd G E, Rommens C M, Scofield S R, Kim H S, Lavelle D T, Dahlbeck D, Staskawicz B J. Tomato Prf is a member of the leucine-rich repeat class of plant disease resistance genes and lies embedded within the Pto kinase gene cluster. The Plant Cell, 1996, 86(1): 123-133.
[27]Whitham S, Dinesh-Kumar S P, Choi D, Hehl R, Corr C, Baker B. The product of the tobacco mosaic virus resistance gene N: Similarity to toll and the interleukin-1 receptor. Cell, 1994, 78(6): 1011-1015.
[28]Shi H, Li X, Zhang D, Xie C, Hao Z, Li M, Pan G, Zhang S. Development of sequence characterized amplified region (SCAR) primers for the detection of resistance to Sporisorium reiliana in maize. Agricultural Sciences in China, 2009, 8(8): 910-919.
[29]吕香玲, 王邦太, 史利玉, 石红良, 谢传晓, 李新海, 张世煌. 玉米抗甘蔗花叶病毒SCAR分子标记开发. 中国农业科学, 2009, 42(6): 1980-1987.
Lü X L, Wang B T, Shi L Y, Shi H L, Xie C X, Li X H, Zhang S H. Development of SCAR markers for sugarcane mosaic virus resistance in maize. Scientia Agricultura Sinica, 2009, 42(6): 1980-1987. (in Chinese)
[30]Xu M L, Huaracha E, Korban S S. Development of sequence-characterized amplified regions (SCARs) from amplified fragment length polymorphism (AFLP) markers tightly linked to the Vf gene in apple. Genome, 2001, 44: 63-70.
[31]薄天岳, 叶华智, 王世全, 杨建春, 李晓兵, 翟文学. 亚麻抗锈病基M4的特异分子标记. 遗传学报, 2002, 29(10): 922-927. 
Bo T Y, Ye H Z, Wang S Q, Yang J C, Li X B, Zhai W X. Specific molecular markers of the rust resistance gene M4 in flax. Acta Genetica Sinica, 2002, 29(10): 922-927. (in Chinese)
[32]赵晓彦, 王晓鸣, 王述民. 普通菜豆抗炭疽病基因SCAR 标记鉴定. 作物学报, 2007, 33(11): 1815-1821. 
Zhao X Y, Wang X M, Wang S M. Identification of anthracnose resistant genes based on SCAR markers in common bean (Phaseolus vulgaris L.). Acta Agronomica Sinica, 2007, 33(11): 1815-1821. (in Chinese)
[33]王  飞. 玉米粗缩病抗病位点的分子标记定位[D]. 2007.
Wang F. Molecular mapping of three loci conferring resistance to maize (Zea mays L.) rough dwarf disease[D]. 2007. (in Chinese)
[34]王安乐, 赵德发, 陈朝辉, 王娇娟, 邵新胜, 魏国英. 玉米自交系抗粗缩病特性的遗传基础及轮回选择效应研究. 玉米科学, 2000, 8(1): 80-82.
Wang A L, Zhao D F, Chen Z H, Wang J J, Shao X S, Wei G Y. Genetic analysis for maize rough dwarf virus resistance and for recurrent selection. Journal of Maize Sciences, 2000, 8(1): 80-82. (in Chinese)
[1] DU LongGang, WANG MeiXing. SLAF-marker Development and Its Application in BSA Analysis of Cellulose Content in Pericarp of Maize Kernel [J]. Scientia Agricultura Sinica, 2018, 51(8): 1421-1430.
[2] HAO JunJie, LI Lei, WANG Bo, QIN YuHong, CUI Jian, WANG Ying, WANG PeiSheng, JIANG ZhiXun, SUN JiLu, WANG ZhenQing, YUE Huan, ZHANG ShouCai . Fine Mapping and Analysis Candidate Gene to Powdery Mildew in Cucumber (Cucumis sativus L.) [J]. Scientia Agricultura Sinica, 2018, 51(17): 3427-3434.
[3] ZENG Ji-Wu, JIANG Bo, WU Bo, ZHONG Yun, CHENG Chun-Zhen, MU Hong-Na, GAN Lian-Sheng, PENG Cheng-Ji, ZHONG Guang-Yan, YI Gan-Jun. Morphological and Molecular Studies on a Wild Citrus ‘Longmen Xiangcheng’ [J]. Scientia Agricultura Sinica, 2014, 47(2): 334-343.
[4] LIU Chun-Xiao-1, ZHAO Hai-Jun-1, DONG Shu-Ting-2, WANG Qing-Cheng-1, LI Zong-Xin-1, LIU Kai-Chang-1. Study on Characteristics of Nitrogen Metabolism in Diallel Cross Generation of Different Maize Genotypes After Silking [J]. Scientia Agricultura Sinica, 2014, 47(1): 33-42.
[5] WANG Hong-Xia-1, ZHAO Shu-Gang-2, GAO Yi-3, XUAN Li-Chun-4, ZHANG Zhi-Hua-1. A Construction of the Core-Collection of Juglans regia L. Based on AFLP Molecular Markers [J]. Scientia Agricultura Sinica, 2013, 46(23): 4985-4995.
[6] LIU Zhi-Zhai, WU Xun, LIU Hai-Li, LI Yong-Xiang, LI Qing-Chao, WANG Feng-Ge, SHI Yun-Su, SONG Yan-Chun, SONG Wei-Bin, ZHAO Jiu-Ran, LAI Jin-Sheng, LI Yu, WANG Tian-Yu. Genetic Diversity and Population Structure of Important Chinese Maize Inbred Lines Revealed by 40 Core Simple Sequence Repeats (SSRs) [J]. Scientia Agricultura Sinica, 2012, 45(11): 2107-2138.
[7] ZHANG Li,ZHANG Ji-wang,LIU Peng,DONG Shu-ting. Starch Granule Size Distribution in Grains of Maize with Different Starch Contents [J]. Scientia Agricultura Sinica, 2011, 44(8): 1596-1602 .
[8] YANG Xiu-yan, CAI Yi, FU Jie, TANG Qi-lin, RONG Ting-zhao. Karyotypes of Maize and Its Relatives—Teosinte [J]. Scientia Agricultura Sinica, 2011, 44(7): 1307-1314.
[9] MA Lei,LI Pan,CHEN Zhe,ZHAO Yong-feng,ZHU Li-ying,HUANG Ya-qun,CHEN Jing-tang
. Genetic Analysis and Identification of Maize (Zea mays L.) Low Phytic Acid Inbred Lines
[J]. Scientia Agricultura Sinica, 2011, 44(3): 447-455 .
[10] TAN Wei-wei,WANG Yang,LI Yong-xiang,LIU Cheng,LIU Zhi-zhai,PENG Bo,WANG Di, ZHANG Yan,SUN Bao-cheng,SHI Yun-su,SONG Yan-chun,YANG De-guang,WANG Tian-yu,LI Yu
. QTL Analysis of Ear Traits in Maize Across Multiple Environments
[J]. Scientia Agricultura Sinica, 2011, 44(2): 233-244 .
[11] CHEN Jing, DONG Hao, MA Hai-Zhen, SUN Quan-Xi, LIU Jiang, QI Bao-Xiu, LI Xin-Zheng, DONG Shu-Ting. Comparison of Induction and Regeneration of Embryogenic Callus Initiated from Immature Embryos and Seedling-Derived Young Leaf Segments of Maize [J]. Scientia Agricultura Sinica, 2011, 44(17): 3676-3682.
[12] ZHAO Pu, LIU Rui-Xiang, LI Cheng-Pu, XING Xiang-Ru, CAO Xiao-Liang, TAO Yong-Sheng, ZHANG Zu-Xin. QTL Mapping for Grain Yield Associated Traits Using Ye 478 Introgression Lines in Maize [J]. Scientia Agricultura Sinica, 2011, 44(17): 3508-3519.
[13] JIA Shi-fang,LI Cong-feng,DONG Shu-ting,ZHANG Ji-wang
. Effects of Shading at Different Stages After Anthesis on Maize Grain Weight and Quality at Cytology Level
[J]. Scientia Agricultura Sinica, 2010, 43(5): 911-921 .
[14] LIU Zhi-zhai,SONG Yan-chun,SHI Yun-su,CAI Yi-lin,CHENG Wei-dong,QIN Lan-qiu,LI Yu,WANG Tian-yu
. Racial Classification and Characterization of Maize Landraces in China
[J]. Scientia Agricultura Sinica, 2010, 43(5): 899-910 .
[15] LIU Huai-hua,WANG Li-wen,LIU Nan,LIU Xu,MA Xia,NING Li-hua,ZHANG Hua,CUI De-zhou,JIANG Chuan,CHEN Hua-bang
. Proteomic Analyses of the Early Pollen-Silk Interaction in Maize
[J]. Scientia Agricultura Sinica, 2010, 43(24): 5000-5008 .
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!