中国农业科学 ›› 2022, Vol. 55 ›› Issue (11): 2239-2256.doi: 10.3864/j.issn.0578-1752.2022.11.013
梁鹏(),张天闻,孟科,邵顺成,邹诗凡,荣轩,强浩,冯登侦(
)
收稿日期:
2021-04-09
接受日期:
2021-07-27
出版日期:
2022-06-01
发布日期:
2022-06-16
通讯作者:
冯登侦
作者简介:
梁鹏,E-mail: 基金资助:
LIANG Peng(),ZHANG TianWen,MENG Ke,SHAO ShunCheng,ZOU ShiFan,RONG Xuan,QIANG Hao,FENG DengZhen(
)
Received:
2021-04-09
Accepted:
2021-07-27
Online:
2022-06-01
Published:
2022-06-16
Contact:
DengZhen FENG
摘要:
【目的】 探讨ADIPOQ遗传变异对绵羊生长性状的影响,找到与宁夏优质肉羊培育中生长性状相关的分子遗传标记,为宁夏优质肉羊的分子辅助育种的研究提供依据。【方法】 首先利用液相捕获测序技术获得ADIPOQ在杜泊羊、滩羊和小尾寒羊中的变异位点,同时采集383只3个品种的不同杂交后代群体耳组织,采用飞行质谱技术对确定的SNPs位点进行基因分型检测,并使用Haploview软件对多态性位点进行连锁不平衡分析和构建单倍型,与绵羊初生和3月龄的生长性状进行关联分析。【结果】 共筛选到7个SNPs位点,且7个位点在杂交后代群体中均表现出多态性,SNP1—SNP7位点的优势基因型分别为CC、GG、GG、CT、AG、GG和AA,优势等位基因分别为C、G、G、C、G、G和A。X 2检验发现,所有位点均处于Hardy-Weinberg平衡状态(除SNP7位点在所有个体中偏离了平衡)。SNP1(F2代除外)、SNP4、SNP5和SNP6位点在各杂交后代及所有个体中均处于中度多态(0.25≤PIC<0.50),SNP2和SNP3在F2代及SNP7在H1代群体中均处于中度多态(0.25≤PIC<0.50),而在其他群体中处于低度多态(PIC<0.25)。连锁不平衡分析发现,SNP2-SNP3和SNP5-SNP6形成了两处强连锁,均构建出3种单倍型,组合后分别形成4和6种基因型,其中优势基因型分别为H1H1和H4H6。将SNP2-SNP3和SNP5-SNP6形成的单倍型再组合后产生13种基因型,其优势基因型为H1H1H4H6。单个位点关联分析表明:SNP1位点在F1代群体中,GG基因型的初生胸围显著高于CG基因型(P<0.05),在H2代群体中,CC基因型的初生体斜长显著高于CG基因型(P<0.05)。SNP2位点在H1代群体中,CC基因型的初生体高显著低于CG和GG基因型(P<0.05)。SNP3位点在F1代群体中,AG基因型的3月龄体重显著高于GG基因型(P<0.05),在H1代群体中,AA基因型的初生体高显著低于AG和GG基因型(P<0.05)。SNP4位点在F1代群体中,CC基因型的3月龄体重显著高于CT和TT基因型(P<0.05),在F2代群体中,CT基因型的初生体重和初生胸围显著高于TT基因型(P<0.05),在H1代群体中,TT基因型的初生体重显著低于CC和CT基因型(P<0.05),在H2代群体中,TT基因型的初生体高和初生体斜长显著高于CT基因型(P<0.05)。SNP5位点在F2代群体中,AA基因型的初生体高和初生体斜长显著高于GG基因型(P<0.05)。SNP6位点的不同基因型在F2代、H1代和H2代的初生体重、体高、体斜长、3月龄体高和胸围上均有不同程度的显著差异(P<0.05)。SNP7位点在H2代群体中,AA基因型的初生体斜长显著高于GA基因型(P<0.05)。联合所有群体进行分析时发现,SNP2位点CG基因型的初生体重和体斜长显著高于GG基因型(P<0.05),SNP4位点TT基因型的初生体重显著低于CC和CT基因型(P<0.05),SNP6位点AA基因型的初生体重显著高于GG和GA基因型(P<0.05)、初生胸围显著高于GG基因型(P<0.05),其他5个位点的基因型在生长性状上均无显著差异(P>0.05)。单倍型组合关联分析发现:H2H3基因型的初生体重和初生体斜长显著高于其他基因型(P<0.05);而SNP5-SNP6单倍型组合中,H5H5基因型的初生体重显著高于H5H6和H6H6(P<0.05)、初生体高显著高于H5H6(P<0.05)、初生胸围显著高于H6H6(P<0.05),H4H4基因型的3月龄体重显著高于H5H5基因型(P<0.05)、3月龄体高和体斜长显著高于H4H6基因型(P<0.05)、3月龄胸围显著高于H4H5、H5H6和H5H5基因型(P<0.05)。SNP2-SNP3和SNP5-SNP6形成的单倍型再组合后,H2H3H4H4基因型的初生体重、体高、体斜长和胸围最高,与其他基因型有不同程度的差异,H1H1H4H6的3月龄体斜长显著低于H1H2H4H4和H2H2H4H4基因型(P<0.05)。【结论】 ADIPOQ的遗传变异对绵羊的生长性状具有不同程度的影响,研究中的7个SNPs位点可以作为宁夏优质肉羊选育中生长性状的潜在分子标记。
梁鹏,张天闻,孟科,邵顺成,邹诗凡,荣轩,强浩,冯登侦. 绵羊ADIPOQ多态性与生长性状的关联分析[J]. 中国农业科学, 2022, 55(11): 2239-2256.
LIANG Peng,ZHANG TianWen,MENG Ke,SHAO ShunCheng,ZOU ShiFan,RONG Xuan,QIANG Hao,FENG DengZhen. Association Analysis of the ADIPOQ Variation with Sheep Growth Traits[J]. Scientia Agricultura Sinica, 2022, 55(11): 2239-2256.
表3
各SNP位点引物信息"
SNPs | 突变类型 Mutation type | 上游引物序列 Forward primer sequence | 下游引物序列 Reverse primer sequence | 延伸引物序列 Extended primer sequence |
---|---|---|---|---|
SNP1 | 218921728 C>G | ACGTTGGATGATGAAACTCCCCAGTAAATG | ACGTTGGATGTGAAGAAGACATGTCCCCTG | TCTGAAACTCCCCAGTAAATGTTATCA |
SNP2 | 218921837 C>G | ACGTTGGATGAGACTGTCCTGGGAACATAG | ACGTTGGATGTACAGTGTAGTTAGGAGACC | TTTCTTAGGTACTTGATCAAT |
SNP3 | 218921856 A>G | ACGTTGGATGAGACTGTCCTGGGAACATAG | ACGTTGGATGTACAGTGTAGTTAGGAGACC | TACCTAGTTGGGGGATTC |
SNP4 | 218922172 C>T | ACGTTGGATGACGTTCTGGTTCTGGAACTG | ACGTTGGATGTGAAGGATGTGAAGGTCAGC | GGTGAAGAGCAGGGCCTTGTCGTTC |
SNP5 | 218922461 A>G | ACGTTGGATGCCTTCAATCCCAGTGATTCC | ACGTTGGATGTTCTGTTCCTTGGGTCACTG | CCCCCTCCCAGTGATTCCAGTTTCACC |
SNP6 | 218922482 G>A | ACGTTGGATGCCTTCAATCCCAGTGATTCC | ACGTTGGATGTTCTGTTCCTTGGGTCACTG | TGAGGTCTTCTTGTTCTCTAGGTCT |
SNP7 | 218923544 G>A | ACGTTGGATGAATGCCTGCCATCCAACCTG | ACGTTGGATGTTCTACTGCTGCTAGCCCTG | TCTCCTGCTGCTAGCCCTGCCCAGT |
表4
ADIPOQ各SNPs位点的群体遗传多样性分析"
SNPs | 群体 Groups | 数量 Number | 基因型频率 Genotype frequency | 基因频率 Allele frequency | 纯合度 Ho | 杂合度 He | 有效等位基因数Ne | 多态信息含量PIC | X2(P值) | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|
CC | CG | GG | C | G | ||||||||
SNP1 | F1 | 116 | 0.63(73) | 0.32(37) | 0.05(6) | 0.79 | 0.21 | 0.67 | 0.33 | 1.50 | 0.28 | 0.21(0.90) |
F2 | 144 | 0.73(105) | 0.26(37) | 0.01(2) | 0.86 | 0.14 | 0.76 | 0.24 | 1.32 | 0.21 | 0.39(0.82) | |
H1 | 99 | 0.63(62) | 0.37(37) | 0.00(0) | 0.81 | 0.19 | 0.70 | 0.30 | 1.44 | 0.26 | 5.23(0.07) | |
H2 | 23 | 0.70(16) | 0.26(6) | 0.04(1) | 0.83 | 0.17 | 0.71 | 0.29 | 1.40 | 0.25 | 0.20(0.91) | |
所有个体 All individuals | 382 | 0.67(256) | 0.31(117) | 0.02(9) | 0.82 | 0.18 | 0.71 | 0.29 | 1.41 | 0.25 | 1.06(0.59) | |
SNP2 | CC | CG | GG | C | G | |||||||
F1 | 113 | 0.02(2) | 0.19(21) | 0.79(90) | 0.11 | 0.89 | 0.80 | 0.20 | 1.24 | 0.18 | 0.35(0.84) | |
F2 | 137 | 0.06(8) | 0.35(48) | 0.59(81) | 0.23 | 0.77 | 0.64 | 0.36 | 1.56 | 0.29 | 0.06(0.97) | |
H1 | 95 | 0.02(2) | 0.25(24) | 0.73(69) | 0.15 | 0.85 | 0.75 | 0.25 | 1.34 | 0.22 | 0.00(1.00) | |
H2 | 23 | 0.04(1) | 0.09(2) | 0.87(20) | 0.09 | 0.91 | 0.84 | 0.16 | 1.19 | 0.15 | 4.71(0.10) | |
所有个体 All individuals | 368 | 0.04(13) | 0.26(95) | 0.70(260) | 0.16 | 0.84 | 0.73 | 0.27 | 1.38 | 0.24 | 1.34(0.51) | |
SNP3 | AA | AG | GG | A | G | |||||||
F1 | 113 | 0.02(2) | 0.18(21) | 0.80(90) | 0.11 | 0.89 | 0.80 | 0.20 | 1.24 | 0.18 | 0.35(0.84) | |
F2 | 142 | 0.06(8) | 0.35(50) | 0.59(84) | 0.23 | 0.77 | 0.64 | 0.36 | 1.55 | 0.29 | 0.02(0.99) | |
H1 | 98 | 0.02(2) | 0.24(24) | 0.74(72) | 0.14 | 0.86 | 0.76 | 0.24 | 1.32 | 0.21 | 0.00(1.00) | |
H2 | 23 | 0.04(1) | 0.09(2) | 0.87(20) | 0.09 | 0.91 | 0.84 | 0.16 | 1.19 | 0.15 | 4.71(0.10) | |
所有个体 All individuals | 376 | 0.03(13) | 0.26(97) | 0.71(266) | 0.16 | 0.84 | 0.73 | 0.27 | 1.38 | 0.24 | 1.23(0.54) | |
SNP4 | CC | CT | TT | C | T | |||||||
F1 | 117 | 0.27(32) | 0.49(57) | 0.24(28) | 0.52 | 0.48 | 0.50 | 0.50 | 2.00 | 0.37 | 0.07(0.97) | |
F2 | 143 | 0.40(56) | 0.43(62) | 0.17(25) | 0.61 | 0.39 | 0.52 | 0.48 | 1.91 | 0.36 | 1.16(0.56) | |
H1 | 99 | 0.31(31) | 0.55(54) | 0.14(14) | 0.59 | 0.41 | 0.51 | 0.49 | 1.94 | 0.37 | 1.52(0.47) | |
H2 | 23 | 0.35(8) | 0.35(8) | 0.30(7) | 0.52 | 0.48 | 0.50 | 0.50 | 2.00 | 0.37 | 2.11(0.35) | |
所有个体 All individuals | 382 | 0.33(127) | 0.47(181) | 0.20(74) | 0.57 | 0.43 | 0.51 | 0.49 | 1.96 | 0.37 | 0.44(0.80) | |
SNP5 | AA | AG | GG | A | G | |||||||
F1 | 106 | 0.14(15) | 0.60(63) | 0.26(28) | 0.44 | 0.56 | 0.51 | 0.49 | 1.97 | 0.37 | 4.53(0.10) | |
F2 | 136 | 0.20(27) | 0.46(63) | 0.34(46) | 0.43 | 0.57 | 0.51 | 0.49 | 1.96 | 0.37 | 0.41(0.81) | |
H1 | 91 | 0.11(10) | 0.52(47) | 0.37(34) | 0.37 | 0.63 | 0.53 | 0.47 | 1.87 | 0.36 | 1.10(0.58) | |
H2 | 23 | 0.09(2) | 0.43(10) | 0.48(11) | 0.30 | 0.70 | 0.58 | 0.42 | 1.73 | 0.33 | 0.02(0.99) | |
所有个体 All individuals | 356 | 0.15(54) | 0.52(183) | 0.33(119) | 0.41 | 0.59 | 0.52 | 0.48 | 1.94 | 0.37 | 1.44(0.49) | |
SNP6 | GG | GA | AA | G | A | |||||||
F1 | 116 | 0.60(70) | 0.36(41) | 0.04(5) | 0.78 | 0.22 | 0.66 | 0.34 | 1.52 | 0.28 | 0.11(0.95) | |
F2 | 140 | 0.56(78) | 0.34(48) | 0.10(14) | 0.73 | 0.27 | 0.60 | 0.40 | 1.65 | 0.32 | 2.48(0.29) | |
H1 | 95 | 0.47(45) | 0.41(39) | 0.12(11) | 0.68 | 0.32 | 0.56 | 0.44 | 1.77 | 0.34 | 0.32(0.85) | |
H2 | 23 | 0.52(12) | 0.48(11) | 0.00(0) | 0.76 | 0.24 | 0.64 | 0.36 | 1.57 | 0.30 | 2.27(0.32) | |
所有个体 All individuals | 374 | 0.55(205) | 0.37(139) | 0.08(30) | 0.73 | 0.27 | 0.61 | 0.39 | 1.64 | 0.31 | 0.87(0.65) | |
SNP7 | GG | GA | AA | G | A | |||||||
F1 | 108 | 0.00(0) | 0.31(34) | 0.69(74) | 0.16 | 0.84 | 0.73 | 0.27 | 1.36 | 0.23 | 3.77(0.15) | |
F2 | 139 | 0.00(0) | 0.26(36) | 0.74(103) | 0.13 | 0.87 | 0.77 | 0.23 | 1.29 | 0.20 | 3.08(0.21) | |
H1 | 91 | 0.01(1) | 0.39(35) | 0.60(55) | 0.20 | 0.80 | 0.68 | 0.32 | 1.48 | 0.27 | 3.19(0.20) | |
H2 | 21 | 0.00(0) | 0.19(4) | 0.81(17) | 0.10 | 0.90 | 0.83 | 0.17 | 1.21 | 0.16 | 0.23(0.89) | |
所有个体 All individuals | 359 | 0.01(1) | 0.30(109) | 0.69(249) | 0.15 | 0.85 | 0.74 | 0.26 | 1.35 | 0.23 | 9.37(0.01) |
表5
SNP1位点与生长性状的关联分析"
月龄 Month age | 群体 Group | 数量 Number | 体重Weight (kg) | 体高Body height (cm) | 体斜长Body length (cm) | 胸围Chest girth (cm) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CC | CG | GG | CC | CG | GG | CC | CG | GG | CC | CG | GG | |||
初生 Primary | F1 | 115 | 3.42±0.09 | 3.44±0.11 | 3.82±0.17 | 34.16±0.59 | 33.78±0.71 | 35.83±1.01 | 33.45±0.72 | 32.22±1.02 | 34.83±2.20 | 39.15±1.06ab | 38.25±1.39b | 45.17±1.68a |
F2 | 141 | 3.68±0.08 | 3.72±0.14 | 3.90±0.40 | 34.29±0.43 | 34.36±0.78 | 36.00±3.00 | 34.45±0.58 | 35.22±1.18 | 34.00±1.00 | 40.98±0.82 | 41.22±1.45 | 45.00±5.00 | |
H1 | 99 | 4.14±0.10 | 4.25±0.10 | / | 36.90±0.45 | 37.30±0.38 | / | 38.40±0.71 | 40.00±1.05 | / | 45.56±0.93 | 45.46±1.02 | / | |
H2 | 23 | 4.16±0.29 | 3.68±0.29 | 3.50 | 37.00±1.05 | 36.17±1.66 | 34.00 | 37.75±1.35a | 34.00±0.93b | 31.00 | 45.13±1.98 | 42.67±3.36 | 46.00 | |
所有个体 All individuals | 378 | 3.81±0.06 | 3.84±0.08 | 4.07±0.26 | 35.52±0.32 | 35.49±0.43 | 36.77±1.42 | 35.76±0.45 | 35.90±0.62 | 36.20±2.04 | 42.55±0.61 | 42.18±0.83 | 47.68±2.73 | |
3月龄 Three months | F1 | 78 | 25.00±0.67 | 26.24±0.87 | 28.26±1.87 | 54.53±0.54 | 56.55±0.70 | 54.03±1.50 | 58.69±0.44 | 59.16±0.57 | 59.62±1.21 | 70.34±0.86 | 71.81±1.11 | 74.14±2.41 |
F2 | 80 | 25.14±0.50 | 24.83±0.86 | 23.85±2.71 | 54.46±0.42 | 54.26±0.71 | 56.03±2.25 | 57.47±0.51 | 55.65±0.88 | 56.50±2.78 | 70.88±0.68 | 71.30±1.16 | 69.02±3.67 | |
H1 | 45 | 27.87±0.87 | 27.37±1.12 | / | 54.36±0.58 | 54.52±0.75 | / | 58.41±0.64 | 58.27±0.82 | / | 74.09±1.02 | 75.92±1.30 | / | |
H2 | 23 | 27.97±1.42 | 25.82±2.24 | - | 54.30±0.65 | 52.50±1.04 | - | 58.52±0.98 | 55.44±1.56 | - | 73.70±1.68 | 70.24±2.70 | - | |
所有个体 All individuals | 217 | 26.29±0.43 | 26.53±0.58 | 28.22±1.60 | 54.25±0.33 | 54.91±0.44 | 54.06±1.22 | 58.19±0.35 | 57.55±0.46 | 58.51±1.29 | 72.02±0.55 | 73.05±0.74 | 73.85±2.06 |
表6
SNP2位点与生长性状的关联分析"
月龄 Month age | 群体 Group | 数量 Number | 体重Weight (kg) | 体高Body height (cm) | 体斜长Body length (cm) | 胸围Chest girth (cm) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CC | CG | GG | CC | CG | GG | CC | CG | GG | CC | CG | GG | |||
初生 Primary | F1 | 112 | 3.58±0.48 | 3.46±0.15 | 3.42±0.07 | 33.00±4.00 | 34.10±1.15 | 34.02±0.48 | 35.00±5.00 | 33.30±1.16 | 32.82±0.65 | 39.50±11.50 | 37.75±2.24 | 39.40±0.88 |
F2 | 134 | 4.11±0.21 | 3.77±0.12 | 3.60±0.09 | 37.00±1.50 | 34.46±0.55 | 34.14±0.54 | 38.00±1.25 | 35.48±0.74 | 33.97±0.77 | 42.43±1.84 | 41.92±1.22 | 40.44±0.94 | |
H1 | 95 | 3.75±0.75 | 4.37±0.17 | 4.13±0.08 | 31.50±2.50b | 37.46±0.55a | 37.13±0.38a | 33.50±5.50 | 40.33±1.13 | 38.62±0.73 | 39.00±4.00 | 45.71±1.71 | 45.75±0.78 | |
H2 | 23 | 4.50 | 5.30±1.30 | 3.85±0.21 | 42.00 | 41.50±3.50 | 35.90±0.80 | 43.00 | 42.50±7.50 | 35.55±0.90 | 39.00 | 53.50±13.50 | 43.90±1.40 | |
所有个体 All individuals | 364 | 3.99±0.28ab | 4.22±0.15a | 3.75±0.06b | 35.88±1.53 | 36.88±0.82 | 35.30±0.31 | 37.38±2.19ab | 37.90±1.17a | 35.24±0.44b | 39.98±2.96 | 44.72±1.58 | 42.37±0.60 | |
3月龄 Three months | F1 | 77 | - | 28.25±1.32 | 25.30±0.57 | - | 55.19±1.05 | 54.98±0.46 | - | 59.61±0.87 | 58.77±0.38 | - | 73.32±1.70 | 70.67±0.74 |
F2 | 78 | 24.50±2.19 | 25.78±0.67 | 24.54±0.56 | 56.75±1.83 | 54.55±0.56 | 54.23±0.47 | 58.03±2.27 | 57.86±0.69 | 56.31±0.59 | 72.00±2.99 | 70.50±0.92 | 71.18±0.77 | |
H1 | 44 | - | 27.61±1.39 | 27.91±0.83 | - | 54.80±0.91 | 54.26±0.55 | - | 59.46±0.92 | 58.20±0.56 | - | 74.74±1.61 | 74.75±0.98 | |
H2 | 14 | 35.80 | - | 26.71±1.02 | 56.00 | - | 53.62±0.57 | 60.00 | - | 57.46±1.00 | 82.00 | - | 72.00±1.34 | |
所有个体 All individuals | 213 | 28.32±2.17 | 27.71±0.67 | 26.08±0.41 | 56.81±1.65 | 54.66±0.50 | 54.28±0.31 | 59.59±1.74 | 59.05±0.53 | 57.70±0.32 | 75.60±2.82 | 72.80±0.87 | 72.16±0.53 |
表7
SNP3位点与生长性状的关联分析"
月龄 Month age | 群体 Group | 数量 Number | 体重Weight (kg) | 体高Body height (cm) | 体斜长Body length (cm) | 胸围Chest girth (cm) | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AA | AG | GG | AA | AG | GG | AA | AG | GG | AA | AG | GG | |||||||||||||||||
初生 Primary | F1 | 112 | 3.58±0.48 | 3.46±0.14 | 3.42±0.07 | 33.00±4.00 | 34.06±1.17 | 34.02±0.48 | 35.00±5.00 | 33.47±1.07 | 32.82±0.65 | 39.50±11.50 | 37.47±2.11 | 39.40±0.88 | ||||||||||||||
F2 | 139 | 4.11±0.21 | 3.79±0.12 | 3.61±0.09 | 37.00±1.50 | 34.46±0.55 | 34.05±0.53 | 38.00±1.25 | 35.46±0.75 | 33.94±0.75 | 42.43±1.84 | 41.96±1.24 | 40.38±0.94 | |||||||||||||||
H1 | 98 | 3.75±0.75 | 4.37±0.17 | 4.13±0.08 | 31.50±2.50b | 37.46±0.55a | 37.07±0.37a | 33.50±5.50 | 40.33±1.13 | 38.71±0.71 | 39.00±4.00 | 45.71±1.71 | 45.58±0.75 | |||||||||||||||
H2 | 23 | 4.50 | 5.30±1.30 | 3.85±0.21 | 42.00 | 41.50±3.50 | 35.90±0.80 | 43.00 | 42.50±7.50 | 35.55±0.90 | 39.00 | 53.50±13.50 | 43.90±1.40 | |||||||||||||||
所有个体 All individuals | 369 | 4.08±0.23 | 3.97±0.09 | 3.78±0.06 | 36.45±1.23 | 35.83±0.48 | 35.38±0.30 | 37.79±1.75 | 36.82±0.69 | 35.39±0.43 | 41.91±2.38 | 43.01±0.94 | 42.43±0.59 | |||||||||||||||
3月龄 Three months | F1 | 75 | - | 28.25±1.32a | 25.30±0.57b | - | 55.19±1.05 | 54.98±0.46 | - | 59.61±0.87 | 58.77±0.38 | - | 73.32±1.70 | 70.67±0.74 | ||||||||||||||
F2 | 80 | 24.55±2.48 | 25.76±0.76 | 24.14±0.63 | 56.75±1.83 | 54.55±0.56 | 54.23±0.47 | 58.03±2.27 | 57.86±0.69 | 56.31±0.59 | 72.00±2.99 | 70.50±0.92 | 71.18±0.77 | |||||||||||||||
H1 | 45 | - | 27.52±1.40 | 27.74±0.82 | - | 54.79±0.90 | 54.29±0.54 | - | 59.41±0.98 | 57.97±0.58 | - | 74.72±1.60 | 74.80±0.96 | |||||||||||||||
H2 | 14 | 35.80 | - | 26.71±1.02 | 56.00 | - | 53.62±0.57 | 60.00 | - | 57.46±1.00 | 82.00 | - | 72.00±1.34 | |||||||||||||||
所有个体 All individuals | 214 | 28.28±2.18 | 27.71±0.67 | 26.04±0.41 | 56.82±1.65 | 54.66±0.50 | 54.28±0.31 | 59.53±1.76 | 59.04±0.54 | 57.64±0.33 | 75.61±2.82 | 72.80±0.86 | 72.17±0.53 |
表8
SNP4位点与生长性状的关联分析"
月龄 Month age | 群体 Group | 数量 Number | 体重Weight (kg) | 体高Body height (cm) | 体斜长Body length (cm) | 胸围Chest girth (cm) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CC | CT | TT | CC | CT | TT | CC | CT | TT | CC | CT | TT | |||
初生 Primary | F1 | 116 | 3.58±0.13 | 3.44±0.08 | 3.30±0.14 | 35.26±0.67 | 33.32±0.62 | 34.39±1.01 | 34.55±0.96 | 32.16±0.78 | 33.36±1.33 | 40.81±1.62 | 38.54±1.18 | 38.68±1.49 |
F2 | 140 | 3.68±0.10ab | 3.84±0.12a | 3.35±0.12b | 34.51±0.60 | 34.65±0.60 | 33.16±0.83 | 34.60±0.78 | 35.17±0.88 | 33.40±1.12 | 41.51±1.05ab | 41.87±1.21a | 37.98±1.32b | |
H1 | 99 | 4.30±0.11a | 4.23±0.10a | 3.72±0.20b | 37.32±0.55 | 37.20±0.41 | 35.86±0.99 | 39.97±1.03 | 39.02±0.81 | 36.79±1.66 | 45.42±1.15 | 45.69±0.93 | 45.14±2.26 | |
H2 | 23 | 4.19±0.42 | 3.61±0.15 | 4.26±0.52 | 37.88±1.77ab | 34.00±1.10b | 38.29±0.81a | 36.88±2.34ab | 33.13±0.52b | 39.86±1.20a | 45.13±3.95 | 41.50±1.88 | 47.29±1.61 | |
所有个体 All individuals | 378 | 3.91±0.08a | 3.88±0.07a | 3.60±0.09b | 36.06±0.42 | 35.32±0.36 | 35.18±0.51 | 36.43±0.60 | 35.54±0.52 | 35.38±0.73 | 43.22±0.80 | 42.58±0.70 | 41.54±0.98 | |
3月龄 Three months | F1 | 79 | 27.98±1.38a | 25.27±0.70b | 24.42±0.97b | 56.19±0.90 | 55.13±0.59 | 54.45±0.81 | 59.77±0.70 | 58.82±0.46 | 58.35±0.64 | 73.71±1.36 | 70.35±0.90 | 70.25±1.25 |
F2 | 79 | 25.42±0.69 | 24.81±0.66 | 24.48±1.03 | 54.43±0.58 | 54.66±0.55 | 53.95±0.86 | 57.63±0.72 | 56.41±0.69 | 56.93±1.07 | 70.81±0.94 | 70.68±0.90 | 71.63±1.41 | |
H1 | 45 | 27.32±1.29 | 27.44±0.95 | 28.98±1.76 | 54.26±0.87 | 54.60±0.64 | 54.14±1.15 | 58.26±0.95 | 58.60±0.70 | 57.78±1.21 | 74.54±1.53 | 75.03±1.13 | 74.42±1.96 | |
H2 | 14 | 27.61±2.30 | 25.96±1.89 | 29.20±2.30 | 53.05±1.11 | 53.41±0.98 | 55.09±1.16 | 56.05±1.70 | 58.01±1.64 | 58.68±2.05 | 72.27±2.35 | 69.58±1.91 | 77.87±2.57 | |
所有个体 All individuals | 217 | 27.26±0.59 | 26.10±0.49 | 25.92±0.67 | 54.64±0.45 | 54.57±0.37 | 54.02±0.51 | 58.39±0.47 | 57.81±0.39 | 57.77±0.54 | 72.99±0.76 | 72.02±0.62 | 72.36±0.86 |
表9
SNP5位点与生长性状的关联分析"
月龄 Month age | 群体 Group | 数量 Number | 体重Weight (kg) | 体高Body height (cm) | 体斜长Body length (cm) | 胸围Chest girth (cm) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AA | AG | GG | AA | AG | GG | AA | AG | GG | AA | AG | GG | |||
初生 Primary | F1 | 105 | 3.47±0.16 | 3.43±0.08 | 3.35±0.16 | 33.57±1.17 | 33.92±0.58 | 34.00±0.97 | 33.36±1.44 | 32.38±0.75 | 33.32±1.26 | 38.43±2.56 | 39.17±1.09 | 38.54±1.71 |
F2 | 133 | 3.89±0.15 | 3.66±0.10 | 3.53±0.12 | 35.42±0.79a | 34.48±0.57ab | 33.25±0.69b | 36.42±0.96a | 34.92±0.79ab | 32.70±0.96b | 41.77±1.57 | 40.97±1.02 | 40.33±1.32 | |
H1 | 91 | 4.48±0.28 | 4.19±0.10 | 4.07±0.13 | 37.30±1.14 | 36.96±0.37 | 36.88±0.66 | 41.00±2.21 | 39.74±0.95 | 37.41±0.87 | 45.70±2.82 | 45.13±0.98 | 46.29±1.23 | |
H2 | 23 | 4.00±0.50 | 4.16±0.34 | 3.87±0.34 | 38.00±4.00 | 37.40±1.33 | 35.73±1.16 | 37.00±6.00 | 36.60±1.77 | 36.27±1.35 | 42.50±3.50 | 45.00±3.18 | 44.45±1.82 | |
所有个体 All individuals | 352 | 4.01±0.11 | 3.84±0.07 | 3.71±0.08 | 36.09±0.62 | 35.59±0.36 | 35.00±0.42 | 37.30±0.89 | 35.96±0.51 | 34.71±0.59 | 42.74±1.20 | 42.51±0.70 | 42.37±0.80 | |
3月龄 Three months | F1 | 66 | 25.80±1.49 | 25.16±0.59 | 24.76±1.03 | 54.70±1.39 | 55.26±0.56 | 54.25±0.95 | 58.85±1.14 | 59.07±0.46 | 57.95±0.78 | 72.63±1.99 | 70.31±0.80 | 69.60±1.39 |
F2 | 78 | 25.04±0.94 | 25.07±0.62 | 24.75±0.82 | 55.09±0.78 | 54.34±0.51 | 54.33±0.69 | 57.91±0.98 | 56.74±0.64 | 56.70±0.87 | 71.24±1.26 | 70.23±0.83 | 71.77±1.11 | |
H1 | 42 | 26.73±2.14 | 27.90±1.03 | 27.29±1.20 | 53.05±1.44 | 55.07±0.69 | 54.08±0.79 | 58.85±1.52 | 58.63±0.74 | 57.34±0.85 | 75.04±2.46 | 75.27±1.19 | 73.07±1.37 | |
H2 | 13 | - | 25.88±1.62 | 27.44±1.51 | - | 53.00±0.88 | 54.11±0.83 | - | 56.94±1.44 | 58.25±1.34 | - | 71.69±2.11 | 72.38±1.97 | |
所有个体 All individuals | 199 | 26.61±0.81 | 26.32±0.46 | 25.95±0.55 | 54.62±0.65 | 54.58±0.37 | 54.13±0.44 | 58.72±0.6570 | 58.02±0.40 | 57.41±0.48 | 73.36±1.04 | 71.97±0.59 | 71.80±0.71 |
表10
SNP6位点与生长性状的关联分析"
月龄 Month age | 群体 Group | 数量 Number | 体重Weight (kg) | 体高Body height (cm) | 体斜长Body length (cm) | 胸围Chest girth (cm) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GG | GA | AA | GG | GA | AA | GG | GA | AA | GG | GA | AA | |||
初生 Primary | F1 | 115 | 3.40±0.08 | 3.49±0.10 | 3.72±0.59 | 33.70±0.56 | 34.76±0.72 | 34.80±2.50 | 32.72±0.74 | 33.44±0.91 | 36.00±3.48 | 38.65±0.99 | 40.05±1.36 | 42.00±5.79 |
F2 | 137 | 3.73±0.09 | 3.61±0.12 | 3.84±0.21 | 34.66±0.50 | 33.62±0.68 | 34.71±1.29 | 35.64±0.69a | 33.11±0.92b | 34.50±1.86ab | 40.86±0.97 | 40.66±1.21 | 42.93±2.43 | |
H1 | 95 | 4.08±0.12b | 4.18±0.09b | 4.61±0.24a | 36.69±0.46b | 36.82±0.42b | 39.45±1.15a | 38.56±1.03 | 39.79±0.85 | 38.09±1.42 | 44.58±1.18 | 45.90±0.85 | 48.45±2.27 | |
H2 | 23 | 4.09±0.31 | 3.92±0.32 | / | 37.67±0.76 | 35.55±1.52 | / | 38.00±1.23 | 34.82±1.64 | / | 45.25±1.38 | 43.73±3.08 | / | |
所有个体 All individuals | 370 | 3.82±0.06b | 3.82±0.07b | 4.11±0.15a | 35.52±0.35 | 35.36±0.39 | 36.76±0.81 | 36.06±0.50 | 35.48±0.57 | 35.90±1.17 | 42.17±0.66b | 42.77±0.75ab | 45.08±1.55a | |
3月龄 Three months | F1 | 78 | 25.89±0.64 | 25.40±0.91 | 25.90 | 55.29±0.53 | 54.99±0.76 | 58.00 | 58.71±0.42 | 59.15±0.59 | 61.00 | 71.69±0.82 | 70.17±1.15 | 70.00 |
F2 | 78 | 25.10±0.57 | 24.26±0.78 | 26.38±1.28 | 54.94±0.47 | 53.58±0.64 | 54.66±1.05 | 56.87±0.60 | 56.68±0.83 | 58.22±1.34 | 71.43±0.76 | 69.13±1.04 | 73.06±1.71 | |
H1 | 43 | 27.42±0.93 | 29.25±1.19 | 27.17±1.83 | 53.77±0.59b | 56.31±0.77a | 53.00±1.18b | 58.60±0.65 | 59.18±0.83 | 57.77±1.27 | 74.21±1.14 | 76.49±1.46 | 73.73±2.22 | |
H2 | 14 | 29.15±1.61 | 25.57±1.61 | / | 55.26±0.69a | 52.31±0.69b | / | 58.78±0.99 | 56.51±1.45 | / | 76.11±1.57a | 69.32±1.57b | / | |
所有个体 All individuals | 213 | 26.62±0.46 | 26.19±0.55 | 27.09±1.14 | 54.65±0.35 | 54.30±0.42 | 54.35±0.88 | 58.05±0.37 | 57.95±0.44 | 58.53±0.91 | 72.99±0.59 | 71.42±0.70 | 73.20±1.46 |
表11
SNP7位点与生长性状的关联分析"
月龄 Month age | 群体 Group | 数量 Number | 体重Weight (kg) | 体高Body height (cm) | 体斜长Body length (cm) | 胸围Chest girth (cm) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GG | GA | AA | GG | GA | AA | GG | GA | AA | GG | GA | AA | |||
初生 Primary | F1 | 107 | / | 3.47±0.10 | 3.45±0.08 | / | 34.00±0.66 | 34.31±0.57 | / | 32.85±0.95 | 33.39±0.69 | / | 39.09±1.45 | 39.47±1.01 |
F2 | 137 | / | 3.82±0.13 | 3.64±0.08 | / | 34.61±0.69 | 34.18±0.46 | / | 35.19±0.96 | 34.25±0.61 | / | 41.53±1.40 | 40.92±0.85 | |
H1 | 91 | 4.50 | 4.34±0.11 | 4.09±0.10 | 36.00 | 37.74±0.42 | 36.71±0.48 | 45.00 | 40.43±0.84 | 38.56±0.78 | 45.00 | 47.14±1.08 | 44.82±0.95 | |
H2 | 21 | / | 3.35±0.29 | 4.17±0.27 | / | 33.50±1.55 | 37.24±1.01 | / | 32.00±0.71b | 37.71±1.27a | / | 39.75±4.25 | 45.06±1.86 | |
所有个体 All individuals | 356 | 4.50 | 3.91±0.08 | 3.81±0.06 | 36.00 | 35.67±0.45 | 34.48±0.32 | 45.00 | 36.24±0.62 | 35.77±0.44 | 45.00 | 42.94±0.87 | 41.40±0.62 | |
3月龄 Three months | F1 | 71 | / | 26.73±0.94 | 25.41±0.69 | / | 55.01±0.75 | 54.91±0.55 | / | 59.36±0.61 | 58.74±0.45 | / | 71.50±1.21 | 71.19±0.89 |
F2 | 78 | / | 24.63±0.81 | 25.35±0.51 | / | 54.54±0.66 | 54.50±0.41 | / | 55.95±0.83 | 57.44±0.52 | / | 71.18±1.10 | 71.00±0.69 | |
H1 | 41 | 30.40 | 27.56±1.21 | 27.81±0.94 | 54.00 | 54.82±0.81 | 54.30±0.63 | 60.00 | 58.83±0.79 | 58.54±0.62 | 79.00 | 74.97±1.40 | 73.77±1.08 | |
H2 | 13 | / | 29.16±3.06 | 27.63±1.28 | / | 54.95±1.34 | 54.01±0.53 | / | 57.67±1.64 | 58.42±0.67 | / | 71.75±4.41 | 73.68±1.65 | |
所有个体 All individuals | 203 | 30.40 | 26.78±0.61 | 26.57±0.43 | 54.00 | 54.66±0.46 | 54.47±0.33 | 60.00 | 57.99±0.48 | 58.32±0.35 | 79.00 | 72.81±0.78 | 72.36±0.56 |
表12
SNP2-SNP3位点单倍型组合与生长性状的关联分析"
月龄 Month age | 组合基因型 Combined genotype | 体重Weight (kg) | 体高Body height (cm) | 体斜长Body length (cm) | 胸围Chest girth (cm) |
---|---|---|---|---|---|
初生 Primary | H2H2(12) | 4.00±0.18ab | 35.83±1.35 | 37.17±1.38ab | 41.08±1.88 |
H2H3(20) | 4.27±0.17a | 37.20±0.61 | 39.60±1.03a | 45.25±1.93 | |
H1H2(74) | 3.78±0.10b | 34.78±0.51 | 35.54±0.69b | 41.43±1.10 | |
H1H1(258) | 3.70±0.05b | 35.03±0.28 | 34.93±0.41b | 41.82±0.51 | |
3月龄 Three months | H2H2(6) | 25.83±1.06 | 55.33±1.54 | 59.17±2.20 | 71.67±2.39 |
H2H3(11) | 24.07±0.84 | 53.00±0.60 | 57.09±0.80 | 70.82±1.37 | |
H1H2(45) | 24.85±0.40 | 54.42±0.44 | 57.94±0.59 | 70.00±0.67 | |
H1H1(161) | 23.88±0.22 | 53.88±0.26 | 56.98±0.29 | 69.96±0.36 |
表13
SNP5-SNP6位点单倍型组合与生长性状的关联分析"
月龄 Month age | 组合基因型 Combined genotype | 体重 Weight (kg) | 体高 Body height (cm) | 体斜长 Body length (cm) | 胸围 Chest girth (cm) |
---|---|---|---|---|---|
初生 Primary | H4H4(55) | 3.85±0.11ab | 35.31±0.57ab | 36.49±0.79 | 40.98±1.16ab |
H4H6(94) | 3.70±0.08bc | 34.68±0.43ab | 34.91±0.71 | 41.41±0.88ab | |
H4H5(88) | 3.80±0.08ab | 35.53±0.47ab | 35.88±0.71 | 41.95±0.89ab | |
H6H6(40) | 3.40±0.14c | 34.43±0.76ab | 34.28±1.02 | 39.99±1.30b | |
H5H6(45) | 3.63±0.11bc | 33.78±0.60b | 33.62±0.89 | 42.40±1.21ab | |
H5H5(29) | 4.07±0.18a | 36.28±0.94a | 36.00±1.17 | 44.24±1.88a | |
3月龄 Three months | H4H4(35) | 24.92±0.48a | 54.74±0.66a | 58.49±0.67a | 71.74±0.79a |
H4H6(64) | 24.28±0.34ab | 50.23±1.21b | 52.90±1.36b | 70.09±0.50ab | |
H4H5(52) | 23.78±0.43ab | 53.65±0.47ab | 56.57±0.59ab | 68.90±0.62b | |
H6H6(23) | 24.37±0.60ab | 54.09±0.57a | 56.13±0.63ab | 72.00±1.09a | |
H5H6(25) | 23.90±0.49ab | 53.68±0.61ab | 57.44±0.67a | 68.88±0.89b | |
H5H5(13) | 22.98±0.55b | 53.62±0.87ab | 58.08±0.88a | 68.23±0.74b |
表14
SNP2-SNP3和SNP5-SNP6位点单倍型组合与生长性状的关联分析"
月龄 Month age | 组合基因型 Combined genotype | 体重 Weight (kg) | 体高 Body height (cm) | 体斜长 Body length (cm) | 胸围 Chest girth (cm) |
---|---|---|---|---|---|
初生 Primary | H1H1H4H4(18) | 3.64±0.16bc | 34.78±1.04b | 34.44±1.28bc | 40.83±1.96b |
H1H1H4H5(52) | 3.73±0.11bc | 35.50±0.64ab | 35.87±1.02bc | 41.56±1.10b | |
H1H1H4H6(62) | 3.67±0.09bc | 34.71±0.51b | 34.44±0.92bc | 41.21±1.02b | |
H1H1H5H5(29) | 4.07±0.18abc | 36.28±0.94ab | 36.00±1.17bc | 44.24±1.88ab | |
H1H1H5H6(42) | 3.61±0.11bc | 33.79±0.62b | 33.52±0.91c | 42.43±1.20b | |
H1H1H6H6(40) | 3.40±0.14c | 34.43±0.76b | 34.28±1.02bc | 39.99±1.30b | |
H1H2H4H4(16) | 3.83±0.24bc | 35.00±0.98b | 37.56±1.68abc | 38.88±2.14b | |
H1H2H4H5(30) | 3.86±0.16bc | 35.23±0.78ab | 35.43±1.07bc | 42.23±1.76b | |
H1H2H4H6(23) | 3.58±0.17bc | 33.91±1.02b | 34.22±1.16bc | 41.30±2.06b | |
H2H3H4H4(6) | 4.62±0.25a | 38.83±0.48a | 41.67±0.84a | 49.67±3.81a | |
H2H3H4H5(5) | 4.18±0.22ab | 37.40±1.50ab | 36.80±1.66abc | 43.80±2.80ab | |
H2H3H4H6(8) | 4.14±0.37ab | 36.38±0.94ab | 39.63±2.17ab | 43.38±3.39ab | |
H2H2H4H4(12) | 4.00±0.18abc | 35.83±1.35ab | 37.17±1.38abc | 41.08±1.88b | |
3月龄 Three months | H1H1H4H4(15) | 24.61±0.68 | 54.73±1.15 | 57.93±0.95ab | 71.20±1.05 |
H1H1H4H5(30) | 22.89±0.56 | 53.63±0.68 | 56.03±0.77ab | 68.50±0.82 | |
H1H1H4H6(46) | 24.34±0.43 | 48.60±1.61 | 51.21±1.82b | 70.30±0.62 | |
H1H1H5H5(13) | 22.98±0.55 | 53.62±0.87 | 58.08±0.88ab | 68.23±0.74 | |
H1H1H5H6(25) | 23.90±0.49 | 53.68±0.61 | 57.44±0.67ab | 68.88±0.89 | |
H1H1H6H6(23) | 24.37±0.60 | 54.09±0.57 | 56.13±0.63ab | 72.00±1.09 | |
H1H2H4H4(9) | 25.12±1.09 | 55.33±1.15 | 59.56±1.43a | 72.11±1.81 | |
H1H2H4H5(19) | 25.21±0.61 | 53.63±0.71 | 57.18±1.03ab | 69.21±1.01 | |
H1H2H4H6(14) | 24.19±0.61 | 54.64±0.70 | 57.43±0.78ab | 69.79±1.08 | |
H2H3H4H4(4) | 24.65±2.05 | 51.75±1.31 | 57.00±1.29ab | 72.75±2.84 | |
H2H3H4H5(3) | 23.67±1.94 | 54.00±0.00 | 58.00±2.08ab | 71.00±3.46 | |
H2H3H4H6(4) | 23.80±0.50 | 53.50±0.87 | 56.50±1.32ab | 68.75±0.75 | |
H2H2H4H4(6) | 25.83±1.06 | 55.33±1.54 | 59.17±2.20a | 71.67±2.39 |
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