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Diagnosis and characterization of the ribosomal DNA-ITS of potato rot nematode (Ditylenchus destructor) populations from Chinese medicinal herbs

NI Chun-hui, HAN Bian, LIU Yong-gang, Maria MUNAWAR, LIU Shi-ming, LI Wen-hao, SHI Ming-ming, LI Hui-xia, PENG De-liang
2023, 22 (6): 1763-1781.   DOI: 10.1016/j.jia.2022.08.126
Abstract181)      PDF in ScienceDirect      

The potato rot nematode (Ditylenchus destructor) is a very economically important nematode in agronomic and horticultural plants worldwide.  In this study, 43 populations of Ddestructor were collected from different hosts across China, including 37 populations from Chinese herbal medicine plants.  Obtained sequences of ITS-rDNA and D2–D3 of 28S-rDNA genes of Ddestructor were compared and analyzed.  Nine types of significant length variations in ITS sequences were observed among all populations.  The differences in ITS1 length were mainly caused by the presence of repetitive elements with substantial base substitutions.  Reconstructions of ITS1 secondary structures showed that the minisatellites formed a stem structure.  Ten haplotypes were observed in all populations based on mutations and variations of helix H9.  Among them, 3 known haplotypes (A–C) were found in 7 populations isolated from potato, sweet potato, and Codonopsis pilosula, and 7 unique haplotypes were found in other 36 populations collected from Cpilosula and Angelica sinensis compared with 7 haplotypes (A–G) according to Subbotin’ system.  These unique haplotypes were different from haplotypes A–G, and we named them as haplotypes H–N.  The present results showed that a total of 14 haplotypes (A–N) of ITS-rDNA have been found in Ddestructor.  Phylogenetic analyses of ITS-rDNA and D2–D3 showed that all populations of Ddestructor were clustered into two major clades: one clade only containing haplotype A from sweet potato and the other containing haplotypes B–N from other plants.  For further verification, PCR-ITS-RFLP profiles were conducted on 7 new haplotypes.  Collectively, our study suggests that Ddestructor populations on Chinese medicinal materials are very different from those on other hosts and this work provides a paradigm for relevant researches.

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Resistance of barley varieties to Heterodera avenae in the Qinghai–Tibet Plateau, China
Yan Jia-hui, Jia Jian-ping, JIANG Li-ling, Peng De-liang, Liu Shi-ming, Hou Sheng-ying, YU Jing-wen, Li Hui-xia, Huang Wen-kun
2022, 21 (5): 1401-1413.   DOI: 10.1016/S2095-3119(21)63769-3
Abstract149)      PDF in ScienceDirect      
The cereal cyst nematode, Heterodera avenae, is one of the most economically important pathogens impacting the worldwide production of cereals and is widely distributed in more than 16 regions in China.  The present study used the numbers of nematodes inside the plant roots to evaluate the resistance/susceptibility of different subpopulations of barley Hordeum vulgare (QH2R, QH6R and TB2R) to H. avenae under field and pot conditions.  Nematode development in two highly resistant varieties was also evaluated by in vivo experiment and microscopic observation.  Analyses of 186 selected varieties showed the numbers of susceptible varieties identified with the number of females/cysts per plant (NFP) method were significantly higher than those identified with the Pf/Pi ratio (PPR) method, which indicated that the NFP method rather than the PPR method is more reliable to evaluate the resistance of barley.  The field and pot experiment results indicated that the QH2R subpopulation had lower females/cysts numbers than QH6R and TB2R subpopulations, and eight HR varieties (Sunong 7617, Sunong 7635, Dongyuan 87-14, Rudong 14-46, Rudong 87-57, Rudong 87-8-45, Rudong 88-14-2, and Rudong 88-67-1) were identified in QH2R, with the NFP numbers below 4.2.  Further microscopic observation of nematode development suggested that H. avenae often penetrated less into highly resistant varieties (Sunong 7635 and Dongyuan 87-14) and more frequently failed to develop into females than the susceptible barleys.  The promising resistant varieties identified in the present research might be helpful for breeders to develop CCN-resistant cultivars and control H. avenae populations effectively at low costs.
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Molecular and morphological characterization of stunt nematodes of wheat, maize, and rice in the savannahs of northern Nigeria
Sulaiman ABDULSALAM, , PENG Huan, LIU Shi-ming, HUANG Wen-kun, KONG Ling-an, PENG De-liang
2022, 21 (2): 586-595.   DOI: 10.1016/S2095-3119(21)63696-1
Abstract220)      PDF in ScienceDirect      
Stunt nematodes (Tylenchorhynchus spp.) are obligate migratory root ecto-parasitic nematodes found in the fields of many cultivated crops.  These nematodes, with phyto-sanitary potential, are frequently ignored or misdiagnosed as pests, and this may pose a threat to food security.  The accuracy of its identification based on a morphological approach has been challenged recently, due to the overlapping of the morphological and morphometric characters of the species.  Consequently, the objective of this study is to identify and characterize stunt nematodes present in 54 fields cultivated with cereal crops (wheat, maize and rice) in the savannahs of northern Nigeria, using integrative taxonomy and molecular approaches.  The molecular and morphological studies identified and confirmed the presence of T. annulatus as the occurring specie in the savannahs of northern Nigeria.  The phylogenetic analysis was carried out using the internal transcribed spacer (ITS) and 28S genes of ribosomal DNA further confirmed the presence of T. annulatus.  The first molecular characterization and sequences of the ITS and 28S rDNA gene for T. annulatus from Nigeria were provided by this research.  Also, according to our literature search, this is the first report on T. annulatus in wheat, maize and rice in the savannahs of northern Nigeria.  Further study to test the pathogenicity of the parasitic nematode species found in this survey is recommended for the prioritization and development of efficient management strategies.
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Potassium sulphate induces resistance of rice against the root-knot nematode Meloidogyne graminicola
LIU Mao-Yan, PENG De-liang, SU Wen, XIANG Chao, JIAN Jin-zhuo, ZHAO Jie, PENG Huan, LIU Shi-ming, KONG Ling-an, DAI Liang-ying, HUANG Wen-kun, LIU Jing
2022, 21 (11): 3263-3277.   DOI: 10.1016/j.jia.2022.08.002
Abstract268)      PDF in ScienceDirect      

Potassium (K), an important nutrient element, can improve the stress resistance/tolerance of crops.  The application of K in resisting plant-parasitic nematodes shows that the K treatment can reduce the occurrence of nematode diseases and increase crop yield.  However, data on K2SO4 induced rice resistance against the root-knot nematode Meloidogyne graminicola are still lacking.  In this work, K2SO4 treatment reduced galls and nematodes in rice plants and delayed the development of nematodes.  Rather than affecting the attractiveness of roots to nematodes and the morphological phenotype of giant cells at feeding sites, such an effect is achieved by rapidly priming hydrogen peroxide (H2O2) accumulation and increasing callose deposition.  Meanwhile, galls and nematodes in rice roots were more in the potassium channel OsAKT1 and transporter OsHAK5 gene-deficient plants than in wild-type, while the K2SO4-induced resistance showed weaker in the defective plants.  In addition, during the process of nematode infection, the expression of jasmonic acid (JA)/ethylene (ET)/brassinolide (BR) signaling pathway-related genes and pathogenesis-related (PR) genes OsPR1a/OsPR1b was up-regulated in rice after K2SO4 treatment.  In conclusion, K2SO4 induced rice resistance against M. graminicola.  The mechanism of inducing resistance was to prime the basal defense and required the participation of the K+ channel and transporter in rice.  These laid a foundation for further study on the mechanism of rice defense against nematodes and the rational use of potassium fertilizer on improving rice resistance against nematodes in the field.

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A fragment of a 70-kDa Heterodera glycines heat shock protein (HgHSP70) interacts with soybean cyst nematode-resistant protein GmSHMT08
LIU Zhi, ZHANG Liu-ping, ZHAO Jie, JIAN Jin-zhuo, PENG Huan, HUANG Wen-kun, KONG Ling-an, PENG De-liang, LIU Shi-ming
2022, 21 (10): 2973-2983.   DOI: 10.1016/j.jia.2022.07.048
Abstract228)      PDF in ScienceDirect      


Soybean cyst nematode (SCN) Heterodera glycines is considered as the major constraint to soybean production.  GmSHMT08 at Rhg4 locus on chromosome 08, encoding a serine hydroxylmethyltransferase, is a major gene underlying resistance against Hglycines in Peking-type soybeans.  However, the molecular mechanism underpinning this resistance is less well characterized, and whether GmSHMT08 could interact with proteins in Hglycines remains unclear.  In this study, yeast two-hybrid screening was conducted using GmSHMT08 as a bait protein, and a fragment of a 70-kDa heat shock protein (HgHSP70) was screened from Hglycines that exhibited interaction with GmSHMT08.  This interaction was verified by both GST pull-down and bimolecular fluorescence complementation assays.  Our finding reveals HgHSP70 could be applied as a potential candidate gene for further exploring the mechanism on GmSHMT08-mediated resistance against SCN Hglycines.


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Effect of Aspergillus niger NBC001 on the soybean rhizosphere microbial community in a soybean cyst nematode-infested field
JIN Na, LIU Shi-ming, PENG Huan, HUANG Wen-kun, KONG Ling-an, PENG De-liang
2021, 20 (12): 3230-3239.   DOI: 10.1016/S2095-3119(20)63467-0
Abstract155)      PDF in ScienceDirect      
Soybean cyst nematode (SCN, Heterodera glycines Ichinohe) is one of the most important pests causing considerable damage to soybean (Glycine max (L.) Merr.) around the world.  Biocontrol provides a strategy for sustainable nematode control.  Previously, Aspergillus niger NBC001 was isolated from the cysts of Heterodera spp. and able to control H. glycines and promote the growth of soybean in a pot experiment.  In this study, the effects of NBC001 on H. glycines density and on the soybean rhizosphere microbial community in a soybean cyst nematode-infested field were studied.  The results showed that NBC001 could suppress H. glycines by 31.7% in the field.  High-throughput sequencing analysis showed that NBC001 had no significant influence on soybean rhizosphere microbial community structure, indicating that seed coat-dressing with the concentrated culture filtrate of NBC001 was safe for the soil ecological environment.  In addition, high-throughput sequencing results demonstrated that at 10 days post transplantation, NBC001 increased the abundances of Actinobacteria and Acidobacteria, but decreased the abundances of Bacteroidetes and Gemmatimonadetes at the phylum level.  Meanwhile, the abundances of Phyllobacterium, Ralstonia and H16 were increased, while the abundances of Adhaeribacter, Gemmatimonas, Sphingomonas, Flavisolibacter were suppressed by application of NBC001.  However, at 90 days post transplantation, NBC001 only increased the abundances of Aeromicrobium and RB41 whereas it decreased the abundance of H16.  The results indicated that application of NBC001 increased the relative abundances of the beneficial microorganisms such as Actinobacteria, Acidobacteria, Aeromicrobium and Phyllobacterium in the soil.  In summary, NBC001 is an eco-friendly biocontrol agent for H. glycines control. 
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Molecular characterization and functional analysis of two new lysozyme genes from soybean cyst nematode (Heterodera glycines)
WANG Ning, PENG Huan, LIU Shi-ming, HUANG Wen-kun, Ricardo Holgado, Jihong Liu-Clarke, PENG De-liang
2019, 18 (12): 2806-2813.   DOI: 10.1016/S2095-3119(19)62766-8
Abstract111)      PDF in ScienceDirect      
Soybean cyst nematode (SCN, Heterodera glycines (I.)) is one of the most important soil-borne pathogens for soybeans.  In plant parasitic nematodes, including SCN, lysozyme plays important roles in the innate defense system.  In this study, two new lysozyme genes (Hg-lys1 and Hg-lys2) from SCN were cloned and characterized.  The in situ hybridization analyses indicated that the transcripts of both Hg-lys1 and Hg-lys2 accumulated in the intestine of SCN.  The qRT-PCR analyses showed that both Hg-lys1 and Hg-lys2 were upregulated after SCN second stage juveniles (J2s) were exposed to the Gram-positive bacteria Bacillus thuringiensis, Bacillus subtilis or Staphylococcus aureus.  Knockdown of the identified lysozyme genes by in vitro RNA interference caused a significant decrease in the survival rate of SCN.  All of the obtained results indicate that lysozyme is very important in the defense system and survival of SCN. 
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Evaluation of the biocontrol potential of Aspergillus welwitschiae against the root-knot nematode Meloidogyne graminicola in rice (Oryza sativa L.)
LIU Ying, DING Zhong, PENG De-liang, LIU Shi-ming, KONG Ling-an, PENG Huan, XIANG Chao, LI Zhong-cai, HUANG Wen-kun
2019, 18 (11): 2561-2570.   DOI: 10.1016/S2095-3119(19)62610-9
Abstract108)      PDF in ScienceDirect      
The root-knot nematode Meloidogyne graminicola is considered one of the most devastating pests in rice-producing areas, and nematicides are neither ecofriendly nor cost effective.  More acceptable biological agents are required for controlling this destructive pathogen.  In this study, the biocontrol potential of Aspergillus welwitschiae AW2017 was investigated in laboratory and greenhouse experiments.  The in vitro ovicidal and larvicidal activities of A. welwitschiae metabolites were tested on M. graminicola in laboratory experiments.  The effect of A. welwitschiae on the attraction of M. graminicola to rice and the infection of rice by M. graminicola was evaluated in a greenhouse.  The bioagent AW2017 displayed good nematicidal potential via its ovicidal and larvicidal action.  The best larvicidal activity was observed at a concentration of 5×AW2017, which caused an 86.2% mortality rate at 48 h post inoculation.  The highest ovicidal activity was recorded at a concentration of 5×AW2017, which resulted in an approximately 47.3% reduction in egg hatching after 8 d compared to the control.  Under greenhouse conditions, the application of A. welwitschiae significantly reduced the root galls and nematodes in rice roots compared to the control.  At a concentration of 5×AW2017, juveniles and root galls in rice roots at 14 d post inoculation (dpi) were reduced by 24.5 and 40.5%, respectively.  In addition, the attraction of M. graminicola to rice roots was significantly decreased in the AW2017 treatment, and the development of nematodes in the AW2017-treated plants was slightly delayed compared with that in the PDB-treated control plants.  The results indicate that A. welwitschiae is a potential biological control agent against M. graminicola in rice.
 
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Chemical mutagenesis and soybean mutants potential for identification of novel genes conferring resistance to soybean cyst nematode
GE Feng-yong, ZHENG Na, ZHANG Liu-ping, HUANG Wen-kun, PENG De-liang, LIU Shi-ming
2018, 17 (12): 2734-2744.   DOI: 10.1016/S2095-3119(18)62105-7
Abstract283)      PDF (5218KB)(538)      
The resistance of soybean (Glycine max (L.) Merr.) to soybean cyst nematode (SCN, Heterodera glycines Ichinohe), which is a devastating pathogen in soybean production and causes a large quantity of annual yield loss worldwide, can shift during the long-term interaction and domestication.  It is vital to identify more new resistance genetic sources for identification of novel genes underlying resistance to SCN for management of this pathogen.  In the present study, first, two ethane methylsulfonate-mutagenesis soybean M2 populations of PI 437654, which shows a broad resistance to almost all of SCN races, and Zhonghuang 13, which is a soybean cultivar in China conferring strong resistance to lodging, were developed.  Many types of morphological phenotypes such as four- and five-leaflet leaves were observed from these two soybean M2 populations.  Second, 13 mutants were identified and confirmed to exhibit alteration of resistance to SCN race 4 through the forward genetic screening of 400 mutants of the PI 437654 M2 population, the rate of mutants with alteration of SCN-infection phenotype is 3.25%.  Third, these identified mutants were further verified not to show any changes in the genomic sequences of the three known SCN-resistant genes, GmSHMT08, GmSNAP18 and GmSANP11, compared to the wild-type soybean; and all of them were still resistant to SCN race 3 similar to the wild-type soybean.  Taken together, we can conclude that the 13 mutants identified in the present study carry the mutations of the new gene(s) which contribute(s) to the resistance to SCN race 4 in PI 437654 and can be potentially used as the genetic soybean sources to further identify the novel SCN-resistant gene(s).   
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Conidia of one Fusarium solani isolate from a soybean-production field enable to be virulent to soybean and make soybean seedlings wilted
ZHENG Na, ZHANG Liu-ping, GE Feng-yong, HUANG Wen-kun, KONG Ling-an, PENG De-liang, LIU Shi-ming
2018, 17 (09): 2042-2053.   DOI: 10.1016/S2095-3119(17)61891-4
Abstract389)      PDF (22206KB)(182)      
Fusarium is usually thought to cause soybean root rot, which results in a large quantity of annual yield loss in soybean production, by its secretions including Fusarium toxins and cell wall degrading enzymes, but not by the conidia themselves that do not underlie any virulence so far.  Here we report that the conidia of one Fusarium solani isolate are able to be virulent to soybean and make soybean seedlings wilted alone.  We isolated them from the wilted plants in a soybean-production field and molecularly identified 17 Fusarium isolates through phylogenetic analysis.  Of them, except for one isolate that showed diversity of virulence to different soybeans (virulent to one soybean whereas avirulent to another soybean), the others were all virulent to the two tested soybeans: both conidia cultures and secretions could make soybean seedlings wilted at 5 days post infection, and their virulence had dosage effects that only conidia cultures of at least 5×106 conidia mL–1 could show virulence to soybean; however, the sole conidia of the F. solani isolate #4 also exhibited virulence to soybean and could make soybean seedlings wilted.  Finally, we developed the specific cleaved amplified polymorphic sequences (CAPS) markers to easily differentiate Fusarium isolates.  The isolate #4 in this work will likely be used to investigate the new mechanism of virulence of Fusarium to soybean.     
 
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Evaluation of Chinese rice varieties resistant to the root-knot nematode Meloidogyne graminicola
Zhan Li-ping, Ding Zhong, Peng De-liang, Peng Huan, Kong Ling-an, Liu Shi-ming, Liu Ying, Li Zhong-cai, HUANG Wen-kun
2018, 17 (03): 621-630.   DOI: 10.1016/S2095-3119(17)61802-1
Abstract805)      PDF in ScienceDirect      
The root-knot nematode Meloidogyne graminicola, which is distributed worldwide, is considered a major constraint on rice production in Asia.  The present study used the root gall index and number of nematodes inside the roots to evaluate resistance/susceptibility to M. graminicola in different subpopulations of Oryza sativa (aus, hybrid aus, indica, hybrid indica, temperate japonica, tropical japonica).  Nematode development in highly resistant varieties was also evaluated.  Analyses of randomly selected 35 varieties showed the number of M. graminicola nematodes inside the roots correlated very strongly (r=0.87, P≤0.05) with the nematode gall index, and the results from pot and field experiments revealed similar rankings of the varieties for resistance/susceptibility.  Among the 136 tested varieties, temperate japonica displayed the highest gall index, followed by tropical japonica, indica, hybrid indica, aus, and hybrid aus. Zhonghua 11 (aus), Shenliangyou 1 (hybrid aus) and Cliangyou 4418 (hybrid indica) were highly resistant to M. graminicola under both pot and field conditions.  Further examination of nematode development suggested that compared to susceptible rice, M. graminicola penetrated less often into highly resistant varieties and more frequently failed to develop into females.  The promising varieties found in the present research might be useful for the breeding of hybrid rice in China and for the further development of practical nematode management measures.   
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Occurrence, identification and phylogenetic analyses of cereal cyst nematodes (Heterodera spp.) in Turkey
CUI Jiang-kuan, PENG Huan, LIU Shi-ming, Gul Erginbas Orakci, HUANG Wen-kun, Mustafa Imren, Abdelfattah Amer Dababat, PENG De-liang
2017, 16 (08): 1767-1776.   DOI: 10.1016/S2095-3119(16)61557-5
Abstract743)      PDF in ScienceDirect      
Plant-parasitic nematodes are very common on cereal crops and cause economic losses via reduction in grain quality and quantity. During 2014, 83 soil samples were collected from wheat and barley fields in 21 districts of 13 provinces across five regions (Central Anatolia, Marmara, Aegean, Southeast Anatolia, and Black Sea Region) of Turkey. Cyst-forming nematodes were found in 66 samples (80%), and the internal transcribed spacer (ITS) sequencing and species-specific PCR identified the species in 64 samples as Heterodera filipjevi, Heterodera latipons, and Heterodera avenae. The predominant pathogenic cereal cyst nematode was H. filipjevi, which was found in all five regions surveyed. H. avenae was only detected in Southeast Anatolia whereas H. latipons was detected in Southeast Anatolia and Central Anatolia. ITS-rDNA phylogenetic analyses showed that H. avenae isolates from China clustered with H. australis, and Turkish isolates were closely related to European and USA isolates of this species. H. filipjevi from Turkey and China were clustered closely with those from the UK, Germany, Russia, and the USA. The density of many of these populations exceeded or approached the maximum threshold level for economic loss. To our knowledge, this is the first report of H. filipjevi in Diyarbakir, Edirne, and Kutahya provinces, and the first report of H. avenae in Diyarbakir Province. These results exhibit the most rigorous analysis to date on the occurrence and distribution of Heterodera spp. in Turkey’s major wheat-producing areas, thus providing a basis for more specific resistance breeding, as well as other management practices.
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A new pathotype characterization of Daxing and Huangyuan populations of cereal cyst nematode (Heterodera avenae) in China
CUI Jiang-kuan, HUANG Wen-kun, PENG Huan, LIU Shi-ming, WANG Gao-feng, KONG Lin-an, PENG De-liang
2015, 14 (4): 724-731.   DOI: 10.1016/S2095-3119(14)60982-5
Abstract2052)      PDF in ScienceDirect      
The cereal cyst nematode (CCN, Heteroder aavenae) causes serious yield loss on cereal crops, especially wheat, worldwide. Daxing population in Beijing City and Huangyuan population in Qinghai Province, China, are two CCN populations. In this study, the CCN pathotypes of Daxing and Huangyuan populations were characterized by tests on 23 standard “International Test Assortment” with the local species Wenmai 19 as the susceptible control. Tested materials were grouped by three nematode populations’ virulence on resistant genes (Rha1, Rha2, Rha3, Cre1) and nonresistant genes, varieties and lines. Both Daxing and Huangyuan populations were avirulent to Ortolan (Ha1). Barley cvs. Ortolan, Siri, Morocco, Bajo Aragon 1-1, and Martin 403-2 were all resistant to both populations. Cultivars Herta, Harlan 43 and wheat Iskamish-K-2-light were all susceptible to Huangyuan population, all of them, however, were resistant to Daxing population. The other five oats were all resistant to the two tested CCN populations. Except Iskamisch K-2-light, all the other wheat cultivars (Capa, Loros×Koga, AUS 10894, and Psathias) were susceptible to Daxing population. Because the pathotypes of the two tested CCN populations in Beijing and Qinghai were not identical to any of the 13 pathotypes previously characterized by the test assortment, we classified Daxing and Huangyuan populations as the new pathotypes, named Ha91.
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