The use of RNA interference (RNAi) technology to control pests is explored by researchers globally. Even though RNA is a new class of pest control compound unlike conventional chemical pesticides, the evolution of pest resistance needs to be considered. Here, we first investigate RNAi-based biopesticide resistance of Fusarium asiaticum, which is responsible for devastating diseases of plants, for example, Fusarium head blight. Five resistant strains were isolated from 500 strains that treated with UV-mutagenesis. The mutation common to all of the five resistant mutants occurred in the gene encoding Dicer2 (point mutations at codon 1005 and 1007), which were under strong purifying selection pressure. To confirm whether the mutations in Dicer2 confer resistance to RNAi, we exchanged the Dicer2 locus between the sensitive strain and the resistant strain by homologous double exchange. The transformed mutants, Dicer2R1005D and Dicer2E1007H, exhibited resistance to dsRNA in vitro. Further study showed that mutations of R1005D and E1007H affected the intramolecular interactions of Dicer2, resulting in the dysfunction of RNase III domain of Dicer2. The amount of sRNAs produced by Dicer2R1005D and Dicer2E1007H was extremely reduced along with variation of sRNA length. Together, these findings revealed a new potential mechanism of RNAi resistance and provided insight into RNAi-related biopesticide deployment for fungal control.
The high labor demand during rice seedling cultivation and transplantation poses a significant challenge in advancing machine-transplanted rice cultivation. This problem may be solved by increasing the seeding rate during seedling production while reducing the number of seedling trays. This study conducted field experiments from 2021 to 2022, using transplanting seedling ages of 10 and 15 days to explore the effects of 250, 300, and 350 g/tray on the seedling quality, mechanical transplantation quality, yields, and economic benefits of rice. The commonly used combination of 150 g/tray with a 20-day seedling age in rice production was used as CK. The cultivation of seedlings under a high seeding rate and short seedling age significantly affected seedling characteristics, but there was no significant difference in seedling vitality compared to CK. The minimum number of rice trays used in the experiment was observed in the treatment of 350–10 (300 g/tray and 10-day seedling age), only 152–155 trays ha–1, resulting in a 62% reduction in the number of trays needed. By increasing the seeding rate of rice, missed holes during mechanical transplantation decreased by 2.8 to 4%. The treatment of 300–15 (300 g/tray and 15-day seedling age) achieved the highest yields and economic gains. These results indicated that using crop straw boards can reduce the application of seedling trays. On that basis, rice yields can be increased by raising the seeding rate and shortening the seedling age of rice without compromising seedling quality.
Soybean seed isoflavones are a type of secondary metabolites that can provide health and nutrition benefits for humans. In our previous study, a stable quantitative trait locus (QTL) qIF05-1 controlling the seed isoflavone content in soybean was detected on chromosome (Chr.) 05 in a recombinant inbred line (RIL) population from a cross of Huachun 2×Wayao. In this study, the parental lines were re-sequenced using the Illumina Solexa System with deep coverage. A total of 63,099 polymorphic long insertions and deletions (InDels) (≥15 bp) were identified between the parents Huachun 2 and Wayao. The InDels were unevenly distributed on 20 chromosomes of soybean, varying from 1,826 in Chr. 12 to 4,544 in Chr. 18. A total of 10,002 long InDels (15.85% of total) were located in genic regions, including 1,139 large-effect long InDels which resulted in truncated or elongated protein sequences. In the qIF05-1 region, 68 long InDels were detected between the two parents. Using a progeny recombination experiment and genotype analysis, the qIF05-1 locus was mapped into a 102.2 kb genomic region, and this region contained 12 genes. By RNA-seq data analysis, genome sequence comparison and functional validation through ectopic expression in Arabidopsis thaliana, Glyma.05G208300 (described as GmEGL3), which is a basic helix-loop-helix (bHLH) transcription factor in plants, emerged as the most likely confirmed gene in qIF05-1. These long InDels can be used as a type of complementary genetic method for QTL fine mapping, and they can facilitate genetic studies and molecular-assisted selection breeding in soybean.
Straw mulching alters the composition and loss of dissolved organic matter in farmland surface runoff by inhibiting the fragmentation of soil small macroaggregates
Straw mulching is a widespread practice for reducing the soil carbon loss caused by erosion. However, the effects of straw mulching on dissolved organic matter (DOM) runoff loss from black soil are not well studied. How straw mulching affects the composition and loss of runoff DOM by changing soil aggregates remains largely unclear. Here, a straw mulching treatment was compared to a no mulching treatment (as a control) on sloping farmland with black soil erosion in Northeast China. We divided the soil into large macroaggregates (>2 mm), small macroaggregates (0.25–2 mm), and microaggregates (<0.25 mm). After five rain events, the effects of straw mulching on the concentration (characterized by dissolved organic carbon (DOC)) and composition (analyzed by fluorescence spectroscopy) of runoff and soil aggregate DOM were studied. The results showed that straw mulching reduced the runoff amount by 54.7%. Therefore, although straw mulching increased the average DOC concentration in runoff, it reduced the total runoff DOM loss by 48.3%. The composition of runoff DOM is similar to that of soil, as both contain humic-like acid and protein-like components. With straw mulching treatment, the protein-like components in small macroaggregates accumulated and the protein-like components in runoff declined with rain events. Fluorescence spectroscopy technology may help in understanding the hydrological paths of rain events by capturing the dynamic changes of runoff and soil DOM characteristics. A variation partitioning analysis (VPA) indicated that the DOM concentration and composition of microaggregates explained 68.2% of the change in runoff DOM from no mulching plots, while the change in runoff DOM from straw mulching plots was dominated by small macroaggregates at a rate of 55.1%. Taken together, our results demonstrated that straw mulching reduces the fragmentation of small macroaggregates and the loss of microaggregates, thus effecting DOM compositions in soil and reducing the DOM loss in runoff. These results provide a theoretical basis for reducing carbon loss in sloping farmland.
Irrigation regimes modulate non-structural carbohydrate remobilization and improve grain filling in rice (Oryza sativa L.) by regulating starch metabolism
Recently developed ‘super’ rice cultivars with greater yield potentials often suffer from the problem of poor grain filling, especially in inferior spikelets. Here, we studied the activities of enzymes related to starch metabolism in rice stems and grains, and the microstructures related to carbohydrate accumulation and transportation to investigate the effects of different water regimes on grain filling. Two ‘super’ rice cultivars were grown under two irrigation regimes of well-watered (WW) and alternate wetting and moderate soil drying (AWMD). Compared with the WW treatment, the activities of ADP glucose pyrophosphorylase (AGPase), starch synthase (StSase) and starch branching enzyme (SBE), and the accumulation of non-structural carbohydrates (NSCs) in the stems before heading were significantly improved, and more starch granules were stored in the stems in the AWMD treatment. After heading, the activities of α-amylase, β-amylase, sucrose phosphate synthase (SPS) and sucrose synthase in the synthetic direction (SSs) were increased in the stems to promote the remobilization of NSCs for grain filling under AWMD. During grain filling, the enzymatic activities of sucrose synthase in the cleavage direction (SSc), AGPase, StSase and SBE in the inferior spikelets were increased, which promoted grain filling, especially for the inferior spikelets under AWMD. However, there were no significant differences in vascular microstructures. The grain yield and grain weight could be improved by 13.1 and 7.5%, respectively, by optimizing of the irrigation regime. We concluded that the low activities of key enzymes in carbon metabolism is the key limitation for the poor grain filling, as opposed to the vascular microstructures, and AWMD can increase the amount of NSC accumulation in the stems before heading, improve the utilization rate of NSCs after heading, and increase the grain filling, especially in the inferior spikelets, by altering the activities of key enzymes in carbon metabolism.
Oomycete, particularly Phytophthora species, causes the most devastating crop diseases, such as potato late blight, and threatens the sustainable crop production worldwide. Our previous studies identified Resistance to Phytophthora parasitica 1 (RTP1) as a negative regulator of Arabidopsis resistance to multiple biotrophic pathogens and RTP1 loss-of-function plants displayed rapid cell death and reactive oxygen species (ROS) production during early colonization of P. parasitica. In this study, we aim to decipher the mechanism of RTP1-mediated cell death, and identify a member of vaculoar processing enzymes (VPEs), γVPE, playing a role in rtp1-mediated resistance to P. parasitica and cell death occurrence. Our results showed up-regulation of the expression of γVPE as well as increased VPE/caspase 1-like protease activity in P. parasitica-infected rtp1 mutant plants. Besides, we found that the VPE/caspase 1-like protease activity was required for the cell death occurrence in Arabidopsis plants during the infection of P. parasitica as well as rtp1-mediated resistance to P. parasitica. Further pathogenicity assays on either Arabidopsis γvpe mutant plants or leaves of Nicotiana benthamiana with transient overexpression of γVPE demonstrated γVPE could positively affect plant resistance to P. parasitica. Together, our studies suggest that γVPE might function as an important regulator of plant defense and cell death occurrence in response to P. parasitica infection, and VPE/caspase 1-like protease activity is required for rtp1-mediated resistance to P. parasitica.
Diglyphus wani (Hymenoptera: Eulophidae) is a dominant parasitoid that attacks agromyzid leafminers. Two reproductive types occur in D. wani: arrhenotoky (in which virgin females produce only male offspring; and virgin females mate with males to produce bisexual offspring) and thelytoky (in which virgin females produce female offspring). As a potential biological control agent, exploring the differences in the relevant biological parameters of both strains is necessary. In this study, comparisons between the two strains of D. wani were performed by evaluating the life table and host-killing rate. The thelytokous strain exhibited significantly better life table parameters than its arrhenotokous counterpart. Higher values for the intrinsic rate of increase, finite rate of increase, net reproductive rate, and fecundity were found in the thelytokous strain. The thelytokous strain also performed better than the arrhenotokous strain in terms of net parasitism, host-feeding, host-stinging, and total host-killing rates. Thus, populations of the thelytokous strain could grow fast and kill more hosts. In conclusion, the thelytokous strain of D. wani may be the more promising biological agent against agromyzid leafminers compared to its arrhenotokous counterpart. Also, since the thelytokous strain of D. wani is only known to produce females, it should be given priority in future biocontrol applications owing to the cost savings of breeding only females.
Super-absorbent polymers (SAPs) are widely used chemical water-saving materials, which play an active role in the accumulation of soil water and the improvement of soil structure. Little is known about their performance with repeated usage or about factors influencing their efficiency under alternate wetting and drying cycles. In this study, various concentrations of SAP (0, 0.1, 0.2 and 0.3%) in soil following three continuous wetting and drying cycles (T1, T2 and T3), were studied to determine effects on soil structure stability and hydro-physical properties. The results indicated that the SAP improved soil water supply capacity under conditions of mild drought (T2) and sufficient irrigation (T3) at concentrations of 0.2 and 0.3%, but a reduction was observed under severe drought conditions (T1), which was negatively correlated with the SAP concentration. The physical adsorption of the SAP by soil and the chemical connection between the SAP and soil mineral colloids as Si-O-Si bonds, -OH bonds and different crystalline silica were the important factors that directly lead to the reduction of water retention capacities of the SAP with alternating wet and dry conditions. Compared with the control, the soil liquid phase ratios of the SAP treatments were increased by 8.8–202.7% in the T1 and T2 cycles, which would have led to a decrease in the soil air phase ratios. After repeated wetting and drying cycles, the SAP treatments increased the amount of >0.25 mm soil aggregates and the contents of water-stable macro-aggregate (R0.25), and decreased the amount of <0.053 mm soil aggregates, especially with higher concentrations of the SAP. Increases in mean weight diameter (MWD) and geometric mean diameter (GMD), and declines in fractal dimension (D) and unstable aggregates index (ELT) were all observed with the SAP treatments, which indicated an improvement in soil stability and structure. It was concluded that the distribution and stability of soil aggregates and soil water supply capacity was closely related to SAP concentration, soil moisture condition and the interaction between the SAP and soil particles
In the face of agricultural labor shortages, reducing labor and costs in rice production while meeting demand or increasing yield is crucial for sustainable agricultural development. Utilizing crop straw boards and high-density seedling raising can reduce labor demand and enhance rice yield. This study aimed to investigate the effects of seeding density and transplanting age on tillering patterns, panicle formation rates, and yield to determine optimal cultivation practices for maximizing rice yield. Two-year field experiments were conducted in Sihong County, China, using the japonica rice variety Nanjing 5718. Five seeding densities (150–350 g/tray) and four transplanting ages (10–25 days) were evaluated to assess their impact on tillering patterns, panicle formation rates, and yield. Innovative crop straw boards were employed to enhance planting efficiency and reduce dependence on seedling-raising soil. This approach also lessened tillage layer destruction, promoting sustainable practices. The results indicated that increasing seeding density significantly altered tillering and panicle formation patterns, reducing the occurrence and panicle formation rates of lower-position tillers. Although the occurrence of middle and high-position tillers increased, the overall number of panicles per hill decreased, especially at higher densities, negatively affecting yield. Reducing transplanting age promoted the emergence and panicle formation of lower-position tillers, mitigating these negative effects. Specifically, compared to traditional methods (150 g/tray, 20-day seedlings), the higher seeding density (300 g/tray) and shorter transplanting age (15-day seedlings) increased total panicle number by 3.79–4.73% and yield by 3.38–5.05%. Combining higher seeding densities with reduced transplanting ages offers significant advantages over conventional practices by enhancing resource utilization, improving tillering efficiency. These findings provide actionable recommendations for optimizing rice cultivation practices and contribute to sustainable agricultural development.