Ai Y, Chen L, Xie T, Chen J, Lan S, Peng D. 2019. Construction of core collection of Cymbidium ensifolium cultivars based on SSR fluorescent markers. Acta Horticulturae Sinica, 46, 1999–2008. (in Chinese)

Akpunar B E, Orman E, Yagmur B, Tanyolac M B, Ates D. 2024. Identification of SNP markers linked to calcium and phosphorus accumulation in walnut (Juglans regia L.) fruit by GWAS. Scientia Horticulturae, 335, 113341.

Arbeiter A B, Hladnik M, Jakše J, Bandelj D. 2021. First set of microsatellite markers for immortelle (Helichrysum italicum (Roth) G. Don): A step towards the selection of the most promising genotypes for cultivation. Industrial Crops and Products, 162, 113298.

Bansal M, Morley R J, Nagaraju S K, Dutta S, Mishra A K, Selveraj J, Kumar S, Niyolia D, Harish S M, Abdelrahim O B. 2022. Southeast Asian Dipterocarp origin and diversification driven by Africa-India floristic interchange. Science, 375, 455–460.

Baziar G, Jafari M, Noori M S S, Samarfard S. 2018. Evaluation of genetic diversity among Persian fig cultivars by morphological traits and RAPD markers. HortScience, 53, 613–619.

Bhattarai G, Shi A, Kandel D R, Solis-Gracia N, Da Silva J A, Avila C A. 2021. Genome-wide simple sequence repeats (SSR) markers discovered from whole-genome sequence comparisons of multiple spinach accessions. Scientific Reports, 11, 9999.

Biet E, Sun J S, Dutreix M. 1999. Conserved sequence preference in DNA binding among recombination proteins: An effect of ssDNA secondary structure. Nucleic Acids Research, 27, 596–600.

Bonthala B, Abdin M, Arya L, Pandey C D, Sharma V, Yadav P, Verma M. 2022. Genome-wide SSR markers in bottle gourd: Development, characterization, utilization in assessment of genetic diversity of National Genebank of India and synteny with other related cucurbits. Journal of Applied Genetics, 63, 237–263.

Boutsika A, Sarrou E, Cook C M, Mellidou I, Avramidou E, Angeli A, Martens S, Ralli P, Letsiou S, Selini A. 2021. Evaluation of parsley (Petroselinum crispum) germplasm diversity from the Greek Gene Bank using morphological, molecular and metabolic markers. Industrial Crops and Products, 170, 113767.

Christopoulos M V, Rouskas D, Tsantili E, Bebeli P J. 2010. Germplasm diversity and genetic relationships among walnut (Juglans regia L.) cultivars and Greek local selections revealed by Inter-Simple Sequence Repeat (ISSR) markers. Scientia Horticulturae, 125, 584–592.

Duan Y, Ke J, Zhang H, He Y, Sun G, Sun X. 2014. Autophagic cell death of human hepatoma G2 cells mediated by procyanidins from Castanea mollissima Bl. Shell-induced reactive oxygen species generation. Chemico-Biological Interactions, 224, 13–23.

Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Molecular Ecology, 14, 2611–2620.

Falush D, Stephens M, Pritchard J K. 2003. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics, 164, 1567–1587.

FAO (Food and Agriculture Organization of the United Nations). 2022. FAOSTAT. [2022-1-1]. https://www.fao.org/faostat/zh/#data/QCL/visualize

Fernandez-Agullo A, Freire M S, Antorrena G, Pereira J A, Gonzalez-Alvarez J. 2014. Effect of the extraction technique and operational conditions on the recovery of bioactive compounds from chestnut (Castanea sativa) bur and shell. Separation Science and Technology, 49, 267–277.

Gao Y, Wang D, Wang K, Cong P, Li L, Piao J. 2020. Genetic diversity and population structure of 17 species of Malus Mill. native to China based on fluorescent SSR analysis. Journal of Fruit Science, 37, 1611–1622. (in Chinese)

Guo W J, Ling J, Li P. 2009. Consensus features of microsatellite distribution: Microsatellite contents are universally correlated with recombination rates and are preferentially depressed by centromeres in multicellular eukaryotic genomes. Genomics, 93, 323–331.

Han J C, Liu Q X, Wang G P, Kong D J, Zhang X Z. 2006. The progress of the genetic diversity studies on Castanea (Tourn.) L. Acta Agriculturae Boreali-Sinica, 21, 129–132. (in Chinese)

He X D, Zhang J W, Tian X Y, Jiao Z Y, Dou Q Q. 2021. Genetic relationship analysis and fingerprint construction of Carya illinoensis varieties. Forestry Scientific Research, 34, 95–102.

Hou S, Ren X, Yang Y, Wang D, Du W, Wang X, Li H, Han Y, Liu L, Sun Z. 2022. Genome-wide development of polymorphic microsatellite markers and association analysis of major agronomic traits in core germplasm resources of tartary buckwheat. Frontiers in Plant Science, 13, 819008.

Hu Z P, Zhao H, Chen C, Yuan Z Y. 2018. Castanea mollissima shell-derived porous carbons as metal-free catalysts for highly efficient dehydrogenation of propane to propylene. Catalysis Today, 316, 214–222.

Huang W, Cheng L, Zhou Z, Liu J. 2010. SSR analysis on genetic diversity of wild Chinese chestnut populations. Journal of Fruit Science, 27, 227–232.

Huang X, Yang M, Guo J, Liu J, Chu G, Xu Y. 2022. Genome-wide survey and analysis of microsatellites in waterlily, and potential for polymorphic marker development. Genes, 13, 1782.

Jiang X, Tang D, Gong B. 2017. Genetic diversity and association analysis of Chinese chestnut (Castanea mollissima Blume) cultivars based on SSR markers. Brazilian Journal of Botany, 40, 235–246.

Jiang X B, Tang D, Gong B C, Lai J S. 2015. Genetic diversity and association analysis of local cultivars of Chinese chestnut based on SSR markers. Acta Horticulturae Sinica, 42, 2478–2488. (in Chinese)

Kruglyak S, Durrett R T, Schug M D, Aquadro C F. 1998. Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations. Proceedings of the National Academy of Sciences of the United States of America, 95, 10774–10778.

Kubisiak T, Nelson C, Staton M, Zhebentyayeva T, Smith C, Olukolu B, Fang G C, Hebard F, Anagnostakis S, Wheeler N. 2013. A transcriptome-based genetic map of Chinese chestnut (Castanea mollissima) and identification of regions of segmental homology with peach (Prunus persica). Tree Genetics & Genomes, 9, 557–571.

Lal M, Munda S, Bhandari S, Saikia S, Begum T, Pandey S K. 2022. Molecular genetic diversity analysis using SSR marker amongst high solasodine content lines of Solanum khasianum CB Clarke, an industrially important plant. Industrial Crops and Products, 184, 115073.

Lei L, Wang H B, Li Y H, Chen S Q, Wu M X, Dou M J, Qi Y Y, Fang J P, Zhang J S. 2022. Genome-wide development of interspecific microsatellite markers for Saccharum officinarum and Saccharum spontaneum. Journal of Integrative Agriculture, 21, 3230–3244.

Li Y C, Korol A B, Fahima T, Beiles A, Nevo E. 2002. Microsatellites: Genomic distribution, putative functions and mutational mechanisms: A review. Molecular Ecology, 11, 2453–2465.

Liu C, Wang S, Chang X, Wang S. 2015. Structural and functional properties of starches from Chinese chestnuts. Food Hydrocolloids, 43, 568–576.

Liu D, Chen W, Lin S, Xu W, Guo X, Huang P. 2017. Analysis of genetic relationship of pummelo germplasms by SSR markers in Zhejiang Province. Journal of Fruit Science, 34, 166–174. (in Chinese)

Liu G, Cao J, Lan Y, Wang J. 2017. Construction of SSR fingerprint on 33 ancient chestnut trees. Acta Agriculturae Universitatis Jiangxiensis, 39, 134–139. (in Chinese)

Liu K, Muse S V. 2005. PowerMarker: An integrated analysis environment for genetic marker analysis. Bioinformatics, 21, 2128–2129.

Liu S, Liu H, Wu A, Hou Y, An Y, Wei C. 2017. Construction of fingerprinting for tea plant (Camellia sinensis) accessions using new genomic SSR markers. Molecular Breeding, 37, 1–14.

Liu W, Xiao Z, Jiang N, Fan C, Xiang X. 2023. Genome-wide development of polymorphic SNP markers and evaluation of genetic diversity of litchi (Litchi chinensis Sonn.). Plants, 12, 3949.

Mellano M G, Beccaro G L, Donno D, Marinoni D T, Boccacci P, Canterino S, Cerutti A, Bounous G. 2012. Castanea spp. biodiversity conservation: Collection and characterization of the genetic diversity of an endangered species. Genetic Resources and Crop Evolution, 59, 1727–1741.

De La Montaña Míguelez J, Míguez Bernárdez M, Garcia Queijeiro J. 2004. Composition of varieties of chestnuts from Galicia (Spain). Food Chemistry, 84, 401–404.

Müller M, Nelson C D, Gailing O. 2018. Analysis of environment-marker associations in American chestnut. Forests, 9, 695.

Nie X H, Li Y R, Tian S L, Wang X F, Su S C, Cao Q Q, Xing Y, Qin L. 2022a. Construction of DNA fingerprints of Chinese chestnut varieties (lines) and analysis of their genetic diversity. Journal of Horticulture, 49, 2313–2324. (in Chinese)

Nie X H, Liu S, Wang B Y, Li Y, Lian M Q, Qin L, Zheng R J, Xing Y. 2022b. Analysis of genetic structure and construction of fingerprints based on SSR markers of main planted Japanese chestnut varieties (lines) in China. Journal of Nuclear Agriculture, 36, 2104–2114. (in Chinese)

Nie X H, Wang Z H, Liu N W, Li S, Yan B Q, Yu X, Zhang Q, Fang K F, Zhao Y L, Xin C. 2021. Fingerprinting 146 Chinese chestnut (Castanea mollissima Blume) accessions and selecting a core collection using SSR markers. Journal of Integrative Agriculture, 20, 1277–1286.

Nie X H, Zhang Y, Chu S H, Yu W J, Liu Y, Yan B Q, Zhao S Q, Gao W L, Li C X, Shi X T, Zheng R J, Fang K F, Qin L, Xing Y. 2024. New insights into the evolution and local adaptation of the genus Castanea in east Asia. Horticulture Research, 11, uhae147.

Nishio S, Ruan S, Sawamura Y, Terakami S, Takada N, Takeuchi Y, Saito T, Inoue E. 2020. Genetic evidence that Chinese chestnut cultivars in Japan are derived from two divergent genetic structures that originated in China. PLoS ONE, 15, e0235354.

Pandey S, Yadav P S, Ansari W A, Pandey M, Yang L, Singh B, Dubey R K, Singh P M, Singh J. 2021. Development of high conserved cross-species microsatellite markers from cucumber genome and their applicability in genetic diversity and comparative mapping. Scientia Horticulturae, 288, 110408.

Patil P G, Singh N V, Bohra A, Raghavendra K P, Mane R, Mundewadikar D M, Babu K D, Sharma J. 2021. Comprehensive characterization and validation of chromosome-specific highly polymorphic SSR markers from pomegranate (Punica granatum L.) cv. Tunisia genome. Frontiers in Plant Science, 12, 645055.

Peakall R, Smouse P. 2012. 6: Genetic analysis in Excel. Population genetic software for teaching and research. Bioinformatics, 28, 2537–2539.

Peakall R, Smouse P E. 2006. GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288–295.

Sadeqi M B, Dadshani S, Yousefi M, Ajir G M. 2019. Investigation of genetic diversity in afghan bread wheat genotypes using SSR and AFLP markers. Turkish Journal of Agriculture (Food Science and Technology), 7, 1263–1267.

Sardar S S, Pradhan K, Shukla R P, Saraswat R, Srivastava A, Jena S N, Das A B. 2016. In silico mining of EST-SSRs in Arachis hypogaea L. and their utilization for genetic structure and diversity analysis in cultivars/breeding lines in Odisha, India. Molecular Breeding, 36, 1–16.

Savadi S, Muralidhara B, Venkataravanappa V, Adiga J, Manjunatha K, Patil B. 2022. De novo transcriptome assembly and its utility in development and characterization of the first set of genic SSR markers in cashew. Industrial Crops and Products, 189, 115734.

Selkoe K A, Toonen R J. 2006. Microsatellites for ecologists: A practical guide to using and evaluating microsatellite markers. Ecology Letters, 9, 615–629.

Shi J, Huang S, Fu D, Yu J, Wang X, Hua W, Liu S, Liu G, Wang H. 2013. Evolutionary dynamics of microsatellite distribution in plants: Insight from the comparison of sequenced Brassica, Arabidopsis and other angiosperm species. PLoS ONE, 8, e59988.

Song L, Li X, Peng F, Niu K, Xie Y. 2017. Chemical composition, physiological activity and application of chestnut shell. Journal of Hebei Normal University of Science & Technology, 31, 30–33. (in Chinese)

Subirana J A, Messeguer X. 2008. Structural families of genomic microsatellites. Gene, 408, 124–132.

Taberlet P, Luikart G. 1999. Non-invasive genetic sampling and individual identification. Biological Journal of the Linnean Society, 68, 41–55.

Tautz D, Renz M. 1984. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Research, 12, 4127–4138.

Unamba C I, Nag A, Sharma R K. 2015. Next generation sequencing technologies: The doorway to the unexplored genomics of non-model plants. Frontiers in Plant Science, 6, 1074.

Vallejo V A, Warner R M. 2021. Identifying quantitative trait loci for steviol glycoside production in Stevia rebaudiana using transcriptome-derived SSRs. Industrial Crops and Products, 161, 113176.

De Vasconcelos M D C B M, Bennett R N, Rosa E A, Cardoso J V F. 2007. Primary and secondary metabolite composition of kernels from three cultivars of Portuguese chestnut (Castanea sativa Mill.) at different stages of industrial transformation. Journal of Agricultural and Food Chemistry, 55, 3508–3516.

De Vasconcelos M D C B, Nunes F, Viguera C G, Bennett R N, Rosa E A, Ferreira-Cardoso J V. 2010. Industrial processing effects on chestnut fruits (Castanea sativa Mill.) 3. Minerals, free sugars, carotenoids and antioxidant vitamins. International Journal of Food Science & Technology, 45, 496–505.

Waits L P, Luikart G, Taberlet P. 2001. Estimating the probability of identity among genotypes in natural populations: Cautions and guidelines. Molecular Ecology, 10, 249–256.

Xing Y, Liu Y, Zhang Q, Nie X, Sun Y, Zhang Z, Li H, Fang K, Wang G, Huang H. 2019. Hybrid de novo genome assembly of Chinese chestnut (Castanea mollissima). Gigascience, 8, giz112.

Xu Y, Liu C, Yang X, Wu K, Gong B. 2023. Genome-wide microsatellite characterization and marker development in Diospyros oleifera. Industrial Crops and Products, 203, 117182.

You T T, Zhou S K, Wen J L, Ma C, Xu F. 2014. Chemical composition, properties, and antimicrobial activity of the water-soluble pigments from Castanea mollissima shells. Journal of Agricultural and Food Chemistry, 62, 1936–1944.

Zhang L, Gao H Y, Baba M, Okada Y, Okuyama T, Wu L J, Zhan L B. 2014. Extracts and compounds with anti-diabetic complications and anti-cancer activity from Castanea mollissina Blume (Chinese chestnut). BMC Complementary and Alternative Medicine, 14, 1–9.

Zhang S, Tian L, Zhang Y, Zhao H, Zhao J, Guo J, Zhu G P. 2019. De novo transcriptome assembly of the fresh-cut white husk of Juglans cathayensis Dode: Insights for enzymatic browning mechanism of fresh-cut husk of walnut. Scientia Horticulturae, 257, 108654.

Zhang X F, Zhang S H, Li Y, Guo Y, Wang G P. 2020. Genetic diversity analysis of chestnut germplasm in Yanshan region based on SSR markers. Journal of China Agricultural University, 25, 61–71. (in Chinese)

Zhang Y, Liu L, Liang W. 2005. China Fruit’s Monograph-Chestnut and Hazelnut. China Forestry Publishing House, Beijing. (in Chinese)

Zhao Q, Feng H, Wang L. 2014. Dyeing properties and color fastness of cellulase-treated flax fabric with extractives from chestnut shell. Journal of Cleaner Production, 80, 197–203.

Zheng Z, Zhang N, Huang Z, Zeng Q, Huang Y, Qi Y. 2022. Genome survey sequencing and characterization of simple sequence repeat (SSR) markers in Platostoma palustre (Blume) AJ Paton (Chinese mesona). Scientific Reports, 12, 355.