Aguilar-Martínez J A, Poza-Carrión C, Cubas P. 2007. Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell, 19, 458–472.

Bommert P, Nagasawa N S, Jackson D. 2013. Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nature Genetics, 45, 334–338.

Bortiri E, Chuck G, Vollbrecht E, Rocheford T, Martienssen R, Hake S. 2006. romosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristem of maize. Plant Cell, 18, 574–585.

Clark R M, Wagler T N, Quijada P, Doebley J. 2006. A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nature Genetics, 38, 594–597.

Dixon L E, Greenwood J R, Bencivenga S, Zhang P, Cockram J, Mellers G, Ramm K, Cavanagh C, Swain S M, Boden S A. 2018. TEOSINTE BRANCHED1 regulates inflorescence architecture and development in bread wheat (Triticum aestivum). Plant Cell, 30, 563–581.

Doebley J, Stec A, Hubbard L. 1997. The evolution of apical dominance in maize. Nature, 386, 485–488.

Dong Z, Li W, Unger-Wallace E, Yang J, Vollbrecht E, Chuck G. 2017. Ideal crop plant architecture is mediated by tassels replace upper ears1, a BTB/POZ ankyrin repeat gene directly targeted by TEOSINTE BRANCHED1. Procedings of National Academy of Sciences of the United States of America, 114, E8656–E8664.

Dong Z, Xiao Y, Gaovindarajulu R, Feil R, Siddoway M L, Nielsen T, Lunn J E, Hawkins J, Whipple C, Chuck G. 2019. The regulatory landscape of a core maize domestication module controlling bud dormancy and growth repression. Nature Communications, 10, 3810.

Du Y, Lunde C, Li Y, Jackson D, Hake S, Zhang Z. 2021. Gene duplication at the Fascicled ear1 locus controls the fate of inflorescence meristem cells in maize. Procedings of National Academy of Sciences of the United States of America, 118, e2019218118.

Du Y, Wu B, Xing Y, Zhang Z. 2022. Conservation and divergence: Regulatory networks underlying reproductive branching in rice and maize. Journal of Advanced Research, 41, 179–190.

Fletcher J C. 2018. The CLV-WUS stem cell signaling pathway: A roadmap to crop yield optimization. Plants, 7, 87.

Gallavotti A, Long J A, Stanfield S, Yang X, Jackson D, Vollbrecht E, Schmidt R J. 2010. The control of axillary meristem fate in the maize ramosa pathway. Development, 137, 2849–2856.

Hubbard L, McSteen P, Doebley J, Hake S. 2002. Expression patterns and mutant phenotype of teosinte branched1 correlate with growth suppression in maize and teosinte. Genetics, 162, 1927–1935.

Je B I, Gruel J, Lee Y K, Bommert P, Arevalo E D, Eveland A L, Wu Q, Goldshmidt A, Meeley R, Bartlett M, Komatsu M, Sakai H, Jonsson H, Jackson D. 2016. Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits. Nature Genetics, 48, 785–791.

Kim D E, Jeong J H, Kang Y M, Park Y H, Lee Y J, Kang J S, Choi Y W, Son B G, Kim S T, Jackson D, Je B I. 2022. The impact of fasciation on maize inflorescence architecture. Journal of Plant Biology, 65, 87–98.

Liu L, Du Y, Shen X, Li M, Sun W, Huang J, Liu Z, Tao Y, Zheng Y, Yan J, Zhang Z. 2015. KRN4 controls quantitative variation in maize kernel row number. PLoS Genetics, 11, e1005670.

Liu L, Gallagher J, Arevalo E D, Chen R, Skopelites T, Wu Q, Bartlett M, Jackson D. 2021. Enhancing grain-yield-related traits by CRISPR-Cas9 promoter editing of maize CLE genes. Nature Plants, 7, 287–294.

Liu X, Galli M, Camehl I, Gallavotti A. 2019. RAMOSA1 ENHANCER LOCUS2-meidiated transcriptional repression regulates vegetative and reproductive architecture. Plant Physiology, 179, 348–363.

Lyu J. 2018. TB1 shapes inflorescence. Nature Plants, 4, 239.

McSteen P. 2006. Branching out: The ramose pathway and the evolution of grass inflorescence morphology. Plant Cell, 18, 518–522.

Minakuchi K, Kameoka H, Yasuno N, Umehara M, Luo L, Kobayashi K, Hanada A, Ueno K, Asami T, Yamaguchi S, Kyozuka J. 2010. FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice. Plant & Cell Physiology, 51, 1127–1135.

Morgulis A, Coulouris G, Raytselis Y, Madden T L, Agarwala R, Schäffer A A. 2008. Database indexing for production MegaBLAST searches. Bioinformatics, 24, 1757–1764.

Nicolas M, Rodríguez-Buey M L, Franco-Zorilla J, Cubas P. 2015. A recently evolved alternative splice site in the BRANCHED1a gene controls potato plant architecture. Current Biology, 14, 1799–1809.

Pautler M, Eveland A L, LaRue T, Yang F, Weeks R, Lunde C, Je B I, Meeley R, Komatsu M, Vollbrecht E, Sakai H, Jackson D. 2015. FASCIATED EAR4 encodes a bZIP transcription factor that regulates shoot meristem size in maize. Plant Cell, 27, 104–120.

Rameau C, Bertheloot J, Leduc N, Andrieu B, Foucher F, Sakr S. 2015. Multiple pathways regulate shoot branching. Frontiers in Plant Science, 5, 741.

Rodriguez-Leal D, Xu C, Kwon C T, Soyas C, Demesa-Arevalo E, Man J, Liu L, Lemmon Z H, Jones D S, Eck J V, Jackson D P, Bartlett M E, Nimchuk Z L, Lippman Z B. 2019. Evolution of buffering in a genetic circuit controlling plant stem cell proliferation. Nature Genetics, 51, 786–792.

Satoh-Nagasawa N, Nagasawa N, Malcomber S, Sakai H, Jackson D. 2006. A trehalose metabolic enzyme controls inflorescence architecture in maize. Nature, 441, 227–230.

Seale M, Bennett T, Leyser O. 2017. BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Development, 144, 1661–1673.

Shi Y S, Li Y, Wang T Y, Song Y C (eds). 2006. Descriptions and Data Standard for Maize (Zea mays L.). China Agriculture Press, Beijing. pp. 10–51. (in Chinese)

Stuber A, Zhao Q, Ross-Ibarra J, Doebley J. 2011. Identification of a functional transposon insertion in the maize domestication gene tb1. Nature Genets, 43, 1160–1163.

Stuber A J, Wang H, Doebley J F. 2017. Selection during maize domestication targeted a gene network controlling plant and inflorescence architecture. Genetics, 207, 755–765.

Takeda T, Suwa Y, Suzuki M, Kitano H, Ueguchi-Tanaka M, Ashikari M, Matsuoka M, Ueguchi C. 2003. The OsTB1 gene negatively regulates lateral branching in rice. Plant Journal, 33, 513–520.

Tran Q H, Bui N H, Kappel C, Dau N T N, Nguyen L T, Tran T T, Khanh T D, Trung K H, Lenhard M, Vi S L. 2020. Mapping-by-sequencing via MutMap identifies a mutation in ZmCLE7 underlying fasciation in a newly developed EMS mutant population in an elite tropical maize inbred. Genes (Basel), 11, 281.

Vollbrecht E, Springer P S, Goh L, Buclker IV E S, Martienssen R. 2005. Architecture of floral branch systems in maize and related grasses. Nature, 436, 1119–1126.

Wang B, Smith S M, Li J. 2018. Genetic regulation of shoot architecture. Annual Review of Plant Biology, 69, 437–468.

Yang C J, Kersel L E, Studer A J, Bartlett M E, Whipple C J, Doebley J F. 2016. A gene for genetic background in Zea mays: Fine-mapping enhancer of teosinte branched1.2 to a YABBY class transcription factor. Genetics, 204, 1573–1585.

Zhang Z, Schwartz S, Wagner L, Miller W. 2000. A greedy algorithm for aligning DNA sequences. Journal of Computational Biology, 7, 203–214.

Zou C, Wang P, Xu Y. 2016. Bulked sample analysis in genetics, genomics and crop improvement. Plant Biotechnology Journal, 14, 1941–1955.