Albrektsen T, Richter H E, Clausen J T, Fleckner J. 2001. Identification of a novel integral plasma membrane protein induced during adipocyte differentiation. Biochemical Journal, 359, 393–402.
Betz M J, Slawik M, Lidell M E, Osswald A, Heglind M, Nilsson D, Lichtenauer U D, Mauracher B, Mussack T, Beuschlein F, Enerbäck S. 2013. Presence of brown adipocytes in retroperitoneal fat from patients with benign adrenal tumors: relationship with outdoor temperature. The Journal of Clinical Endocrinology & Metabolism, 98, 4097–4104.
Bi Y, Yuan L, Ying X Y, Chang G. 2019. Two new IncRNAs regulate the key immune factor NOD1 and TRAF5 in chicken lymphocyte. Journal of Integrative Agriculture, 18, 2589–2597.
Bjørndal B, Burri L, Staalesen V, Skorve J, Berge R K. 2011. Different adipose depots: Their role in the development of metabolic syndrome and mitochondrial response to hypolipidemic agents. Journal of Obesity, 2011, 490650.
Bogner-Strauss J G, Prokesch A, Sanchez-Cabo F, Rieder D, Hackl H, Duszka K, Krogsdam A, Di Camillo B, Walenta E, Klatzer A, Lass A, Pinent M, Wong W C, Eisenhaber F, Trajanoski Z. 2010. Reconstruction of gene association network reveals a transmembrane protein required for adipogenesis and targeted by PPARγ. Cellular and Molecular Life Sciences, 67, 4049–4064.
Cero C, Lea H J, Zhu K Y, Shamsi F, Tseng Y H, Cypess A M. 2021. β3-Adrenergic receptors regulate human brown/beige adipocyte lipolysis and thermogenesis. Journal of Clinical Investigation, 6,139–160.
Cinti S, Mitchell G, Barbatelli G, Murano I, Ceresi E, Faloia E, Wang S, Fortier M, Greenberg A S, Obin M S. 2005. Adipocyte death defines macrophage localization and function in adipose tissue of obese mice and humans. Journal of Lipid Research, 46, 2347–2355.
Cotillard A, Poitou C, Torcivia A, Bouillot J L, Dietrich A, Klöting N, Grégoire C, Lolmede K, Blüher M, Clément K. 2014. Adipocyte size threshold matters: Link with risk of type 2 diabetes and improved insulin resistance after gastric bypass. The Journal of Clinical Endocrinology & Metabolism, 99, E1466–E1470.
Crewe C, An Y A, Scherer P E. 2017. The ominous triad of adipose tissue dysfunction: Inflammation, fibrosis, and impaired angiogenesis. The Journal of Clinical Investigation, 127, 74–82.
Cui M, Xiao Z, Wang Y, Zheng M, Song T, Cai X, Sun B, Ye L, Zhang X. 2015. Long noncoding RNA HULC modulates abnormal lipid metabolism in hepatoma cells through an miR-9-mediated RXRA signaling pathway. Cancer Research, 75, 846–857.
Cui X, You L, Li Y, Zhu L, Zhang F, Xie K, Cao Y, Ji C, Guo X. 2016. A transcribed ultraconserved noncoding RNA, uc.417, serves as a negative regulator of brown adipose tissue thermogenesis. The FASEB Journal, 30, 4301–4312.
DeNino W F, Tchernof A, Dionne I J, Toth M J, Ades P A, Sites C K, Poehlman E T. 2001. Contribution of abdominal adiposity to age-related differences in insulin sensitivity and plasma lipids in healthy nonobese women. Diabetes Care, 24, 925–932.
Dimitrova N, Zamudio J R, Jong R M, Soukup D, Resnick R, Sarma K, Ward A J, Raj A, Lee J T, Sharp P A, Jacks T. 2014. LincRNA-p21 activates p21 in cis to promote polycomb target gene expression and to enforce the G1/S checkpoint. Molecular Cell, 54, 777–790.
Du M Q, Huang Y Q, Lu N S, Shu G, Zhu X T, Wang L N, Gao P, Xi Q, Zhang Y, Wang S, Jiang Q. 2014. Characterization and differentiation into adipocytes and myocytes of porcine bone marrow mesenchymal stem cells. Journal of Integrative Agriculture, 13, 837–848.
Elman J S, Li M, Wang F, Gimble J M, Parekkadan B. 2014. A comparison of adipose and bone marrow-derived mesenchymal stromal cell secreted factors in the treatment of systemic inflammation. Journal of Inflammation, 11, 1.
Espinoza C A, Goodrich J A, Kugel J F. 2007. Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription. RNA, 13, 583–596.
Faghihi M A, Wahlestedt C. 2009. Regulatory roles of natural antisense transcripts. Nature Reviews Molecular Cell Biology, 10, 637–643.
Fox C S, Massaro J M, Hoffmann U, Pou K M, Maurovich-Horvat P, Liu C Y, Vasan R S, Murabito J M, Meigs J B, Cupples L A, D’Agostino R B, O’Donnell C J. 2007. Abdominal visceral and subcutaneous adipose tissue compartments: Association with metabolic risk factors in the framingham heart study. Circulation, 116, 39–48.
Frasca D, Diaz A, Romero M, Thaller S, Blomberg B B. 2018. Secretion of autoimmune antibodies in the human subcutaneous adipose tissue. PLoS ONE, 13, e0197472.
Gelfand B, Mead J, Bruning A, Apostolopoulos N, Tadigotla V, Nagaraj V, Sengupta A M, Vershon A K. 2011. Regulated antisense transcription controls expression of cell-type-specific genes in yeast. Molecular and Cellular Biology, 31, 1701–1709.
Huang W, Zhang X, Li A, Xie L, Miao X. 2018. Genome-wide analysis of mRNAs and lncRNAs of intramuscular fat related to lipid metabolism in two pig breeds. Cellular Physiology and Biochemistry, 50, 2406–2422.
Huang X, Fu C, Liu W, Liang Y, Li P, Liu Z, Sheng Q, Liu P. 2019. Chemerin-induced angiogenesis and adipogenesis in 3 T3-L1 preadipocytes is mediated by lncRNA Meg3 through regulating Dickkopf-3 by sponging miR-217. Toxicology and Applied Pharmacology, 385, 114815.
Jiang S, Wang X, Song D, Liu X, Gu Y, Xu Z, Wang X, Zhang X, Ye Q, Tong Z, Yan B, Yu J, Chen Y, Sun M, Wang Y, Gao S. 2019. Cholesterol induces epithelial-to-mesenchymal transition of prostate cancer cells by suppressing degradation of EGFR through APMAP. Cancer Research, 79, 3063–3075.
Jin L, Tang Q, Hu S, Chen Z, Zhou X, Zeng B, Wang Y, He M, Li Y, Gui L, Shen L, Long K, Ma J, Wang X, Chen Z, Jiang Y, Tang G, Zhu L, Liu F, Zhang B, et al. 2021. A pig BodyMap transcriptome reveals diverse tissue physiologies and evolutionary dynamics of transcription. Nature Communications, 12, 3715.
Kamber R A, Nishiga Y, Morton B, Banuelos A M, Barkal A A, Vences-Catalán F, Gu M, Fernandez D, Seoane J A, Yao D, Liu K, Lin S, Spees K, Curtis C, Jerby-Arnon L, Weissman I L, Sage J, Bassik M C. 2021. Inter-cellular CRISPR screens reveal regulators of cancer cell phagocytosis. Nature, 597, 549–554.
Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, Cawley S, Drenkow J, Piccolboni A, Bekiranov S, Helt G, Tammana H, Gingeras T R. 2004. Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Research, 14, 331–342.
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap C C, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang K C, Hallinan J, Mattick J, Hume D A, et al. 2005. Antisense transcription in the mammalian transcriptome. Science, 309, 1564–1566.
Kern P A, Ranganathan S, Li C, Wood L, Ranganathan G. 2001. Adipose tissue tumor necrosis factor and interleukin-6 expression in human obesity and insulin resistance. American Journal of Physiology (Endocrinology and Metabolism), 280, 745–751.
Kershaw E E, Flier J S. 2004. Adipose tissue as an endocrine organ. The Journal of Clinical Endocrinology & Metabolism, 89, 2548–2556.
Kim D, Monaco E, Maki A, de Lima A S, Kong H J, Hurley W L, Wheeler M B. 2010. Morphologic and transcriptomic comparison of adipose- and bone-marrow-derived porcine stem cells cultured in alginate hydrogels. Cell and Tissue Research, 341, 359–70.
Kumar H, Srikanth K, Park W, Lee S H, Choi B H, Kim H, Kim Y M, Cho E S, Kim J H, Lee J H, Jung J Y, Go G W, Lee K T, Kim J M, Lee J, Lim D, Park J E. 2019. Transcriptome analysis to identify long non coding RNA (lncRNA) and characterize their functional role in back fat tissue of pig. Gene, 703, 71–82.
Latos P A, Pauler F M, Koerner M V, Şenergin H B, Hudson Q J, Stocsits R R, Allhoff W, Stricker S H, Klement R M, Warczok K E, Aumayr K, Pasierbek P, Barlow D P. 2012. Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing. Science, 338, 1469–1472.
Li C C, Yu S L, Ren H F, Wu W, Wang Y L, Han Q, Xu H X, Xu Y J, Zhang P P. 2021. Identification and functional prediction of long intergenic noncoding RNAs in fetal porcine longissimus dorsi muscle. Journal of Integrative Agriculture, 20, 201–211.
Li J, Cao Y, Xu X, Xiang H, Zhang Z, Chen B, Hao Y, Wei Z, Zhou P, Chen D. 2015. Increased new lncRNA-mRNA gene pair levels in human cumulus cells correlate with oocyte maturation and embryo development. Reproductive Sciences, 22, 1008–1022.
Lin C S, Xin Z C, Deng C H, Ning H, Lin G, Lue T F. 2010. Defining adipose tissue-derived stem cells in tissue and in culture. Histology and Histopathology, 25, 807–815.
Liu P, Jin L, Zhao L, Long K, Song Y, Tang Q, Ma J, Wang X, Tang G, Jiang Y, Zhu L, Li X, Li M. 2018. Identification of a novel antisense long non-coding RNA PLA2G16-AS that regulates the expression of PLA2G16 in pigs. Gene, 671, 78–84.
Liu T M, Martina M, Hutmacher D W, Hui J H, Lee E H, Lim B. 2007. Identification of common pathways mediating differentiation of bone marrow- and adipose tissue-derived human mesenchymal stem cells into three mesenchymal lineages. Stem Cells, 25, 750–60.
Liu Y, Wang Y, He X, Zhang S, Wang K, Wu H, Chen L. 2018. LncRNA TINCR/miR-31-5p/C/EBP-α feedback loop modulates the adipogenic differentiation process in human adipose tissue-derived mesenchymal stem cells. Stem Cell Research, 32, 35–42.
Long Y, Wang X, Youmans D T, Cech T R. 2017. How do lncRNAs regulate transcription? Science Advances, 3, 2110.
Lu Y, Liu X, Xie M, Liu M, Ye M, Li M, Chen X M, Li X, Zhou R. 2017. The NF-κB-responsive long noncoding RNA FIRRE regulates posttranscriptional regulation of inflammatory gene expression through Interacting with hnRNPU. The Journal of Immunology, 199, 3571–3582.
Ma Y, Gao J, Yin J, Gu L, Liu X, Chen S, Huang Q, Lu H, Yang Y, Zhou H, Wang Y, Peng Y. 2016. Identification of a novel function of adipocyte plasma membrane-associated protein (APMAP) in gestational diabetes mellitus by proteomic analysis of omental adipose tissue. Journal of Proteome Research, 15, 628–637.
Mackie G A. 2000. Stabilization of circular rpsT mRNA demonstrates the 5´-end dependence of RNase E action in vivo. Journal of Biological Chemistry, 275, 25069–25072.
Marchese F P, Raimondi I, Huarte M. 2017. The multidimensional mechanisms of long noncoding RNA function. Genome Biology, 18, 1–13.
Martinez-Santibañez G, Lumeng C N. 2014. Macrophages and the regulation of adipose tissue remodeling. Annual Review of Nutrition, 34, 57–76.
Modarresi F, Faghihi M A, Lopez-Toledano M A, Fatemi R P, Magistri M, Brothers S P, van der Brug M P, Wahlestedt C. 2012. Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation. Nature Biotechnology, 30, 453–459.
Noel D, Caton D, Roche S, Bony C, Lehmann S, Casteilla L, Jorgensen C, Cousin B. 2008. Cell specific differences between human adipose-derived and mesenchymal-stromal cells despite similar differentiation potentials. Experimental Cell Research, 314, 1575–1584.
Oliveira D T, Fernandes I D C, Sousa G G, Santos T, Paiva N C N, Carneiro C M, Evangelista E A, Barboza N R, Guerra-Sá R. 2020. High-sugar diet leads to obesity and metabolic diseases in ad libitum fed rats irrespective of caloric intake. Archives of Endocrinology and Metabolism, 64, 71–81.
Ozsolak F, Kapranov P, Foissac S, Kim S W, Fishilevich E, Monaghan A P, John B, Milos P M. 2010. Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation. Cell, 143, 1018–1029.
Pessentheiner A R, Huber K, Pelzmann H J, Prokesch A, Radner F P W, Wolinski H, Lindroos-Christensen J, Hoefler G, Rülicke T, Birner-Gruenberger R, Bilban M, Bogner-Strauss J G. 2017. APMAP interacts with lysyl oxidase-like proteins, and disruption of Apmap leads to beneficial visceral adipose tissue expansion. The FASEB Journal, 31, 4088–4103.
Poglio S, De Toni-Costes F, Arnaud E, Laharrague P, Espinosa E, Casteilla L, Cousin B. 2010. Adipose tissue as a dedicated reservoir of functional mast cell progenitors. Stem Cells, 28, 2065–2072.
Pontier D B, Gribnau J. 2011. Xist regulation and function explored. Human Genetics, 130, 223–236.
Reilly S M, Saltiel A R. 2017. Adapting to obesity with adipose tissue inflammation. Nature Reviews Endocrinology, 13, 633–643.
Rinn J L, Kertesz M, Wang J K, Squazzo S L, Xu X, Brugmann S A, Goodnough L H, Helms J A, Farnham P J, Segal E, Chang H Y. 2007. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell, 129, 1311–1323.
Romacho T, Elsen M, Röhrborn D, Eckel J. 2014. Adipose tissue and its role in organ crosstalk. Acta Physiologica, 210, 733–753.
Sam S, Haffner S, Davidson M H, D’Agostino R B, Feinstein S, Kondos G, Perez A, Mazzone T. 2008. Relationship of abdominal visceral and subcutaneous adipose tissue with lipoprotein particle number and size in type 2 diabetes. Diabetes, 57, 2022–2027.
Scheideler M. 2019. Regulatory small and long noncoding RNAs in brite. In: Brown Adipose Tissue. Springer, Cham. pp. 215–237.
Shin S, Ajuwon K M. 2018. Divergent response of murine and porcine adipocytes to stimulation of browning genes by 18-carbon polyunsaturated fatty acids and beta-receptor agonists. Lipids, 53, 65–75.
Spadaro P A, Flavell C R, Widagdo J, Ratnu V S, Troup M, Ragan C, Mattick J S, Bredy T W. 2015. Long noncoding RNA-directed epigenetic regulation of gene expression is associated with anxiety-like behavior in mice. Biological Psychiatry, 78, 848–859.
Stapleton K, Das S, Reddy M A, Leung A, Amaram V, Lanting L, Chen Z, Zhang L, Palanivel R, Deiuliis J A, Natarajan R. 2020. Novel long noncoding rna, macrophage inflammation-suppressing transcript (MIST), regulates macrophage activation during obesity. Arteriosclerosis, Thrombosis, and Vascular Biology, 40, 914–928.
Stoecklin G, Mayo T, Anderson P. 2006. ARE-mRNA degradation requires the 5´–3´ decay pathway. EMBO Reports, 7, 72–77.
Sun Y, Cai R, Wang Y, Zhao R, Qin J, Pang W. 2020. A newly identified lncRNA lncIMF4 controls adipogenesis of porcine intramuscular preadipocyte through attenuating autophagy to inhibit lipolysis. Animals, 10, 926.
Sun Y, Chen X, Qin J, Liu S, Zhao R, Yu T, Chu G, Yang G, Pang W. 2018. Comparative analysis of long noncoding RNAs expressed during intramuscular adipocytes adipogenesis in fat-type and lean-type pigs. Journal of Agricultural and Food Chemistry, 66, 12122–12130.
Terashima M, Tange S, Ishimura A, Suzuki T. 2017. MEG3 long noncoding RNA contributes to the epigenetic regulation of epithelial-mesenchymal transition in lung cancer cell lines. Journal of Biological Chemistry, 292, 82–99.
Tufarelli C, Stanley J A, Garrick D, Sharpe J A, Ayyub H, Wood W G, Higgs D R. 2003. Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease. Nature Genetics, 34, 157–165.
Unamuno X, Gómez-Ambrosi J, Rodríguez A, Becerril S, Frühbeck G, Catalán V. 2018. Adipokine dysregulation and adipose tissue inflammation in human obesity. European Journal of Clinical Investigation, 48, e12997.
Villegas V E, Zaphiropoulos P G. 2015. Neighboring gene regulation by antisense long non-coding RNAs. InternationalJournal of Molecular Sciences, 16, 3251–3266.
Wang G Q, Wang Y, Xiong Y, Chen X C, Ma M L, Cai R, Gao Y, Sun Y M, Yang G S, Pang W J. 2016. Sirt1 AS lncRNA interacts with its mRNA to inhibit muscle formation by attenuating function of miR-34a. Scientific Reports, 6, 21865.
Wei N, Wang Y, Xu R X, Wang G Q, Xiong Y, Yu T Y, Yang G S, Pang W J. 2015. PU.1 antisense lncRNA against its mRNA translation promotes adipogenesis in porcine preadipocytes. Animal Genetics, 46, 133–140.
Xie Q, Chen S, Tian R, Huang X, Deng R, Xue B, Qin Y, Xu Y, Wang J, Guo M, Chen J, Tang S, Li G, Zhu H. 2018. Long noncoding RNA ITPRIP-1 positively regulates the innate immune response through promotion of oligomerization and activation of MDA5. Journal of Virology, 92, 507–518.
Xing K, Wang K, Ao H, Chen S, Tan Z, Wang Y, Xitong Z, Yang T, Zhang F, Liu Y, Ni H, Sheng X, Qi X, Wang X, Guo Y, Wang C. 2019. Comparative adipose transcriptome analysis digs out genes related to fat deposition in two pig breeds. Scientific Reports, 9, 1–11.
Xing Y H, Yao R W, Zhang Y, Guo C J, Jiang S, Xu G, Dong R, Yang L, Chen L L. 2017. SLERT regulates DDX21 rings associated with pol I transcription. Cell, 169, 664–678.
Yakovchuk P, Goodrich J A, Kugel J F. 2009. B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes. Proceedings of the National Academy of Sciencesof the United States of America, 106, 5569–5574.
Yan C, Chen J, Chen N. 2016. Long noncoding RNA MALAT1 promotes hepatic steatosis and insulin resistance by increasing nuclear SREBP-1c protein stability. Scientific Reports, 6, 22640.
Yang Y, Zhou R, Zhu S, Li X, Li H, Yu H. 2017. Systematic identification and molecular characteristics of long noncoding RNAs in pig tissues. BioMed Research International, 2017, 6152582.
Ye X, Gui X, Freed D C, Ku Z, Li L, Chen Y, Xiong W, Fan X, Su H, He X, Rustandi R R, Loughney J W, Ma N, Espeseth A S, Liu J, Zhu H, Wang D, Zhang N, Fu T M, An Z. 2019. Identification of adipocyte plasma membrane-associated protein as a novel modulator of human cytomegalovirus infection. PLoS Pathogens, 15, e1007914.
Yi X, He Z, Tian T, Kou Z, Pang W. 2021. LncIMF2 promotes adipogenesis in porcine intramuscular preadipocyte through sponging miR-217. Animal Biotechnology, 34, 268–279.
Yoon J H, Abdelmohsen K, Gorospe M. 2013. Posttranscriptional gene regulation by long noncoding RNA. Journal of Molecular Biology, 425, 3723–3730.
Żelechowska P, Agier J, Kozłowska E, Brzezińska-Błaszczyk E. 2018. Mast cells participate in chronic low-grade inflammation within adipose tissue. Obesity Reviews, 19, 686–697.
Zhang L, Zhao R, Xiao M, Lin S D, Li B X, Qiu F F, Ma J E, Zhang D X, Nie Q H, An L L, Zhang X Q. 2016. An efficient and rapid method to detect and verify natural antisense transcripts of animal genes. Journal of Integrative Agriculture, 15, 2070–2076.
Zhao X Y, Li S, DelProposto J L, Liu T, Mi L, Porsche C, Peng X, Lumeng C N, Lin J D. 2018. The long noncoding RNA Blnc1 orchestrates homeostatic adipose tissue remodeling to preserve metabolic health. Molecular Metabolism, 14, 60–70.
Zhou R, Li S T, Yao W Y, Xie C D, Chen Z, Li Z J. 2021. The Meishan pig genome reveals structural variation-mediated gene expression and phenotypic divergence underlying Asian pig domestication. Molecular Ecology Resources, 21, 2077–2092.
Zhou R, Yao W Y, Xie C D, Zhang L X, Pei Y L, Li H, Li K. 2020. Developmental stage-specific A-to-I editing pattern in the postnatal pineal gland of pigs (Sus scrofa). Journal of Animal Science and Biotechnology, 11, 1–9.
Zhu E, Zhang J, Li Y, Yuan H, Zhou J, Wang B. 2019. Long noncoding RNA Plnc1 controls adipocyte differentiation by regulating peroxisome proliferator-activated receptor γ. The FASEB Journal, 33, 2396–2408.
|