|
A growing problem. 2014. Nature, 510, 187.
Ahmed M A. 2011. BioEdit: An important software for molecular biology. GERF Bulletin of Biosciences, 2, 60-61.
Avise J C. 2000. Phylogeography: The history and formation of species. Harvard University Press, Cambridge, USA.
Baird H P, Moon K L, Janion-Scheepers C, Chown S L. 2020. Springtail phylogeography highlights biosecurity risks of repeated invasions and intraregional transfers among remote islands. Evolutionary Applications, 13, 960-973.
Bandelt H J, Forster P, Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37-48.
Bertelsmeier C, Keller L. 2018. Bridgehead effects and role of adaptive evolution in invasive populations. Trends in Ecology and Evolution, 33, 527-534.
Blackburn T M, Pyšek P, Bacher S, Carlton J T, Duncan R P, Jarošík V, Wilson J R, Richardson D M. 2011. A proposed unified framework for biological invasions. Trends in Ecology and Evolution, 26, 333-339.
Blumenfeld A J, Eyer P A, Husseneder C, Mo J, Johnson L N L, Wang C, Grace J K, Chouvenc T, Wang S, Vargo E L. 2021. Bridgehead effect and multiple introductions shape the global invasion history of a termite. Communications Biology, 4, 196.
Cao J J. 2023. Rapid adaptation mechanism of invasive alien plant Amaranthus palmeri at different environments in China. China, Beijing, Chinese Academy of Agricultural Sciences, Graduate School. (in Chinese)
Cao J J, Wang H W, Fu J G, Wan F H, Guo J Y, Wang R. 2025. Dynamic genetic changes reveal: Intra-lineage diversity, not admixture, explains Amaranthus palmeri’s success in China. International Journal of Molecular Sciences, 26, 8128.
Cao J J, Wu Q M, Wan F H, Guo J Y, Wang R. 2022. Reliable and rapid identification of glyphosate-resistance in the invasive weed Amaranthus palmeri in China. Pest Management Science, 78, 2173-2182.
Diagne C, Leroy B, Vaissière A C, Gozlan R E, Roiz D, Jarić I, Salles J M, Bradshaw C J A, Courchamp F. 2021. High and rising economic costs of biological invasions worldwide. Nature, 592, 571-576.
Estoup A, Ravigné V, Hufbauer R, Vitalis R, Gautier M, Facon B. 2016. Is there a genetic paradox of biological invasion? Annual Review of Ecology, Evolution, and Systematics, 47, 51-72.
Excoffier L, Laval G, Schneider S. 2005. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics, 1, 117693430500100003.
Eyer P A, Blumenfeld A J, Johnson L N L, Perdereau E, Shults P, Wang S, Dedeine F, Dupont S, Bagnères A G, Vargo E L. 2021. Extensive human-mediated jump dispersal within and across the source and introduced ranges of the invasive termite Reticulitermes flavipes. Molecular Ecology, 30, 3948-3964.
Fu Y X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
Gaines T A, Slavov G T, Hughes D, Küpper A, Sparks C D, Oliva J, Vila-Aiub M M, Garcia M A, Merotto A, Neve P. 2021. Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America. Molecular Ecology, 30, 5360-5372.
Garnas J R, Auger-Rozenberg M A, Roques A, Bertelsmeier C, Wingfield M J, Saccaggi D L, Roy H E, Slippers B. 2016. Complex patterns of global spread in invasive insects: eco-evolutionary and management consequences. Biological Invasions, 18, 935-952.
Horvitz N, Wang R, Wan F H, Nathan R. 2017. Pervasive human-mediated large-scale invasion: analysis of spread patterns and their underlying mechanisms in 17 of China’s worst invasive plants. Journal of Ecology, 105, 85-94.
Hulme P E. 2021. Unwelcome exchange: international trade as a direct and indirect driver of biological invasions worldwide. One Earth, 4, 666-679.
Jombart T, Devillard S, Balloux F. 2010. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genetics, 11, 94.
Kim H Y. 2017. Statistical notes for clinical researchers: Chi-squared test and Fisher’s exact test. Restorative Dentistry and Endodontics, 42, 152-155.
Knight T M, Steets J A, Vamosi J C, Mazer S J, Burd M C, Campbell D R, Dudash M R, Johnston M O, Mitchell R J, Ashman T L. 2005. Pollen limitation of plant reproduction: Pattern and process. Annual Review of Ecology, Evolution and Systematics, 36, 467-497.
Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870-1874.
Lavergne S, Molofsky J. 2007. Increased genetic variation and evolutionary potential drive the success of an invasive grass. Proceedings of the National Academy of Sciences, 104, 3883-3888.
Le Roux J J. 2022. Invasion genetics: Molecular genetic insights into the spatial and temporal dynamics of biological invasions. In: The Evolutionary Ecology of Invasive Species. Academic Press, USA. pp. 159-188.
Li Z Y. 2003. Amaranthus palmeri S. Watson, a newly naturalized species in China. Chinese Bulletin of Botany, 20, 734-735. (in Chinese)
Maddock S T, Nussbaum R A, Day J J, Latta L, Miller M, Fisk D L, Wilkinson M, Rocha S, Gower D J, Pfrender M E. 2020. The roles of vicariance and isolation by distance in shaping biotic diversification across an ancient archipelago: evidence from a Seychelles caecilian amphibian. BMC Evolutionary Biology, 20, 110.
Mairal M, Chown S L, Shaw J, Chala D, Chau J H, Hui C, Kalwij J M, Münzbergová Z, Jansen van Vuuren B, Le Roux J J. 2022. Human activity strongly influences genetic dynamics of the most widespread invasive plant in the sub-Antarctic. Molecular Ecology, 31, 1649-1665.
Marchioro C A. 2016. Global potential distribution of Bactrocera carambolae and the risks for fruit production in Brazil. Plos One, 11, e0166142.
McCauley D E. 1995. The use of chloroplast DNA polymorphism in studies of gene flow in plants. Trends in Ecology and Evolution, 10, 198-202.
McCue M D, Javal M, Clusella-Trullas S, Roux J L, Jackson M C, Ellis A G, Richardson D M, Valentine A J, Terblanche J S. 2019. Using stable isotope analysis to answer fundamental questions in invasion ecology: Progress and prospects. Methods in Ecology and Evolution, 11, 123-145.
Mohsen M, Sabry M, Shalaby W, Nagla T, Galahom A, Abdel-Rahman M. 2025. Accurate departure from nucleate boiling ratio (DNBR) prediction using SIMCA’s partial least squares regression and clustering. Kerntechnik, 90, 309-324.
Molin W T, Wright A A, VanGessel M J, McCloskey W B, Jugulam M, Hoagland R E. 2018. Survey of the genomic landscape surrounding the 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene in glyphosate-resistant Amaranthus palmeri from geographically distant populations in the USA. Pest Management Science, 74, 1109-1117.
Nagae K, Kurita Y, Ando D, Onikura N. 2025. Population structure of Cobitis striata complex (Cypriniformes, Cobitidae) based on the mitochondrial DNA in Northern Kyushu, Japan. Ichthyological Research. https://doi.org/10.1007/s10228-025-01042-x
Niu X, Xu Z, Lin Z, Tang Q, Du Z, Gao F. 2025. Population genetic analysis reveals recent demographic expansion and local differentiation of areca palm Velarivirus 1 in Hainan Island. Plants, 14, 2952.
Normile D. 2004. Invasive species: expanding trade with China creates ecological backlash. Science, 306, 968-969.
Oduor A M, Gómez J M, Herrador M B, Perfectti F. 2015. Invasion of Brassica nigra in North America: distributions and origins of chloroplast DNA haplotypes suggest multiple introductions. Biological Invasions, 17, 2447-2459.
Ortego J, Céspedes V, Millán A, Green A J. 2021. Genomic data support multiple introductions and explosive demographic expansions in a highly invasive aquatic insect. Molecular Ecology, 30, 4189-4203.
Peng C Y, Zhang Y L, Song W, Lv Y N, Xu Q, Zheng P, Cai H M. 2019. Using stable isotope signatures to delineate the geographic point-of-origin of Keemun black tea. Journal of the Science of Food and Agriculture, 99, 2596-2601.
Rogers A R, Harpending H. 1992. Population growth makes waves in distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
Rozas J, Ferrer-Mata A, Sánchez-DelBarrio J C, Guirao-Rico S, Librado P, Ramos-Onsins S E, Sánchez-Gracia A. 2017. DnaSP 6: DNA sequence polymorphism analysis of large data sets. Molecular Biology and Evolution, 34, 3299-3302.
Shimono A, Kanbe H, Nakamura S, Ueno S, Yamashita J, Asai M. 2020. Initial invasion of glyphosate-resistant Amaranthus palmeri around grain-import ports in Japan. Plants, People, Planet, 2, 640-648.
Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
Taylor K, Brummer T, Taper M L, Wing A, Rew L J. 2012. Human-mediated long-distance dispersal: an empirical evaluation of seed dispersal by vehicles. Diversity and Distributions, 18, 942-951.
USDA. 2023. Oilseeds: World markets and trade. U.S. Department of Agriculture, Foreign Agricultural Service. https://apps.fas.usda.gov/psdonline/circulars/oilseeds.pdf
Vallejo-Marín M, Friedman J, Twyford A D, Lepais O, Ickert-Bond S M, Streisfeld M A, Yant L, van Kleunen M, Rotter M C, Puzey J R. 2021. Population genomic and historical analysis suggests a global invasion by bridgehead processes in Mimulus guttatus. Communications Biology, 4, 327.
Wang X Y, Shen D W, Jiao J, Xu N N, Yu S, Zhou X F. 2012. Genotypic diversity enhances invasive ability of Spartina alterniflora. Molecular Ecology, 21, 2542-2551.
Wu Z Y, Milne R I, Liu J, Nathan R, Corlett R T, Li D Z. 2023. The establishment of plants following long-distance dispersal. Trends in Ecology and Evolution, 38, 289-300.
Xu H, Pan X, Wang C, Chen Y, Chen K, Zhu S, van Klinken R D. 2020. Species identification, phylogenetic analysis and detection of herbicide-resistant biotypes of Amaranthus based on ALS and ITS. Scientific Reports, 10, 11735.
|