Scientia Agricultura Sinica ›› 2014, Vol. 47 ›› Issue (4): 759-768.doi: 10.3864/j.issn.0578-1752.2014.04.016
• ANIMAL SCIENCE·VETERINARY SCIENCERE·SOURCE INSECT • Previous Articles Next Articles
LI Zhi-Peng-1, JIANG Na-2, LIU Han-Lu-1, CUI Xue-Zhe-1, JING Yi-1, YANG Fu-He-1, LI Guang-Yu-1
| [1]Wright A D G, Klieve A V. Does the complexity of the rumen microbial ecology preclude methane mitigation? Animal Feed Science and Technology, 2011, 166/167: 248-253.[2]An D D, Dong X Z, Dong Z Y. Prokaryote diversity in the rumen of yak (Bos grunniens) and Jinnan cattle (Bos taurus) estimated by 16S rDNA homology analyses. Anaerobe, 2005, 11(4): 207-215.[3]Hiura T, Hashidoko Y, Kobayashi Y, Tahara S. Effective degradation of tannic acid by immobilized rumen microbes of a sika deer (Cervus nippon yesoensis) in winter. Animal Feed Science and Technology, 2010, 155(1): 1-8.[4]Leng J, Cheng Y M, Zhang C Y, Zhu R J, Yang S L, Gou X, Deng W D, Mao H M. Molecular diversity of bacteria in Yunnan yellow cattle (Bos taurs) from Nujiang region, China. Molecular Biology Reports, 2012, 39(2): 1181-1192.[5]Pei C X, Liu Q A, Dong C S, Li H Q, Jiang J B, Gao W J. Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries). Anaerobe, 2010, 16(4): 426-432.[6]Sundset M, Edwards J, Cheng Y, Senosiain R, Fraile M, Northwood K, Praesteng KE, Glad T, Mathiesen S, Wright A D. Molecular diversity of the rumen microbiome of Norwegian Reindeer on natural summer pasture. Microbial Ecology, 2009, 57(2): 335-348.[7]Sundset M A, Praesteng K E, Cann I K, Mathiesen S D, Mackie R I. Novel rumen bacterial diversity in two geographically separated sub-species of reindeer. Microbial Ecology, 2007, 54(3): 424-438.[8]张玲. 双峰驼瘤胃细菌多样性及宏基因组文库构建与初步筛选[D]. 乌鲁木齐: 新疆农业大学, 2010.Zhang L. Bacterial diversity and the metagenome library construction of the rumen from Bactrian camel (Camelus Bactrianus) [D]. Urumqi: Xinjiang Agricultural University, 2010. (in Chinese)[9]de Menezes A B, Lewis E, O’Donovan M, O’Neill B F, Clipson N, Doyle E M. Microbiome analysis of dairy cows fed pasture or total mixed ration diets. FEMS Microbiology Ecology, 2011, 78(2): 256-265.[10]Fernando S C, Purvis H T, Najar F Z, Sukharnikov L O, Krehbiel C R, Nagaraja T G, Roe B A, DeSilva U. Rumen microbial population dynamics during adaptation to a high-grain diet. Applied and Environmental Microbiology, 2010, 76(22): 7482-7490.[11]Shi P J, Meng K, Zhou Z G, Wang Y R, Diao Q Y, Yao B. The host species affects the microbial community in the goat rumen. Letters in Applied Microbiology, 2008, 46(1): 132-135.[12]Yang S L, Ma S C, Chen J, Mao H M, He Y D, Xi D M, Yang L Y, He T B, Deng W D. Bacterial diversity in the rumen of Gayals (Bos frontalis), Swamp buffaloes (Bubalus bubalis) and Holstein cow as revealed by cloned 16S rRNA gene sequences. Molecular Biology Reports, 2010, 37(4): 2063-2073.[13]刘开朗,卜登攀, 王加启, 于萍, 李旦, 赵圣国, 贺云霞, 魏宏阳, 周凌云. 六个不同品种牛的瘤胃微生物群落的比较分析. 中国农业大学学报, 2009, 14(1): 13-18.Liu K L, Bu D P, Wang J Q, Yu P, Li D, Zhao S G, He Y X, Wei H Y, Zhou L Y. Comparative analysis of rumen microbial communities in six species of cattle. Journal of China Agricultural University, 2009, 14(1): 2063-2073. (in Chinese)[14]Pope P B, Mackenzie A K, Gregor I, Smith W, Sundset M A, McHardy A C, Morrison M, Eijsink V G. Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci. PLoS ONE, 2012, 7(6): e38571.[15]Goel G, Puniya A K, Aguilar CN, Singh K. Interaction of gut microflora with tannins in feeds. Naturwissenschaften, 2005, 92(11): 497-503.[16]McSweeney C S, Palmer B, McNeill D M, Krause D O. Microbial interactions with tannins: nutritional consequences for ruminants. Animal Feed Science and Technology, 2001, 91(1/2): 83-93.[17]Min B R, Attwood G T, McNabb W C, Molan A L, Barry T N. The effect of condensed tannins from Lotus corniculatus on the proteolytic activities and growth of rumen bacteria. Animal Feed Science and Technology, 2005, 121(1/2): 45-58.[18]Nubel U, Engelen B, Felske A, Snaidr J, Wieshuber A, Amann R I, Ludwig W, Backhaus H. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. Journal of Bacteriology, 1996, 178(19): 5636-5643.[19]朱伟云, 姚文, 毛胜勇. 变性梯度凝胶电泳法研究断奶仔猪粪样细菌区系变化. 微生物学报, 2003, 43(3): 503-508.Zhu W Y, Yao W, Mao S Y. Development of bacterial community in faeces of weaning piglets as revealed by denaturing gradient gel electrophoresis. Acta Microbiologica Sinica, 2003, 43(3): 503-508. (in Chinese)[20]Hongoh Y, Ohkuma M, Kudo T. Molecular analysis of bacterial microbiota in the gut of the termite Reticulitermes speratus (Isoptera; Rhinotermitidae). FEMS Microbiology Ecology, 2003, 44(2): 231-242.[21]Saeed A I, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J. TM4: a free, open-source system for microarray data management and analysis. BioTechniques, 2003, 34(2): 374-378.[22]Shyu C, Soule T, Bent SJ, Foster J A, Forney L J. MiCA: a web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes. Microbial Ecology, 2007, 53(4): 562-570.[23]Yu Z, Morrison M. Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Applied and Environmental Microbiology, 2004, 70(8): 4800-4806.[24]Huws S A, Edwards J E, Kim E J, Scollan N D. Specificity and sensitivity of eubacterial primers utilized for molecular profiling of bacteria within complex microbial ecosystems. Journal of Microbiological Methods, 2007, 70(3): 565-569.[25]Watanabe K, Kodama Y, Harayama S. Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting. Journal of Microbiological Methods, 2001, 44(3): 253-262.[26]Osborn A M, Moore E R, Timmis K N. An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2000, 2(1): 39-50.[27]Bekele A Z, Koike S, Kobayashi Y. Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis. FEMS Microbiology Letters, 2010, 305(1): 49-57.[28]Stevenson D M, Weimer P J. Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR. Applied Microbiology and Biotechnology, 2007, 75(1): 165-174.[29]Wu S, Baldwin R L, Li W, Li C, Connor E E, Li R W. The bacterial community domposition of the bovine rumen detected using pyrosequencing of 16S rRNA genes. Metagenomics, 2012, 1: 1-11.[30]Kim M, Morrison M, Yu Z. Status of the phylogenetic diversity census of ruminal microbiomes. FEMS Microbiology Ecology, 2011, 76(1): 49-63.[31]Krause D O, Denman S E, Mackie R I, Morrison M, Rae A L, Attwood G T, McSweeney C S. Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics. FEMS Microbiology Reviews, 2003, 27(5): 663-693.[32]Matsui H, Ogata K, Tajima K, Nakamura M, Nagamine T, Aminov RI, Benno Y. Phenotypic characterization of polysaccharidases produced by four Prevotella type strains. Current Microbiology, 2000, 41(1): 45-49.[33]Kobayashi Y. Inclusion of novel bacteria in rumen microbiology: need for basic and applied science. Animal Science Journal, 2006, 77(4): 375-385.[34]Orpin C G M S. Microbiology of digestion in the Svalbard reindeer (Rangifer tarandus platyrhynchus). Rangifer, 1990(3): 187-199.[35]Aagnes T H, Sormo W, Mathiesen S D. Ruminal microbial digestion in free-living, in captive lichen-ded, and in Starved Reindeer(Rangifer Tarandus Tarandus) in winter. Applied and Environmental Microbiology, 1995, 61(2): 583-591.[36]Tajima K, Aminov R I, Nagamine T, Matsui H, Nakamura M, Benno Y. Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Applied and Environmental Microbiology, 2001, 67(6): 2766-2774.[37]Sleat R, Mah R A. Clostridium populeti sp. nov, a cellulolytic species from a wood-biomass digestor. International Journal of Systematic Bacteriology, 1985, 35(2): 160-163.[38]Taguchi H, Senoura T, Hamada S, Matsui H, Kobayashi Y, Watanabe J, Wasaki J, Ito S. Cloning and sequencing of the gene for cellobiose 2-epimerase from a ruminal strain of Eubacterium cellulosolvens. FEMS Microbiology Letters, 2008, 287(1): 34-40.[39]Yoda K, Toyoda A, Mukoyama Y, Nakamura Y, Minato H. Cloning, sequencing, and expression of a Eubacterium cellulosolvens 5 gene encoding an endoglucanase (Cel5A) with novel carbohydrate-binding modules, and properties of Cel5A. Applied and Environmental Microbiology, 2005, 71(10): 5787-5793.[40]Osborne J M, Dehority B A. Synergism in degradation and utilization of intact forage cellulose, hemicellulose, and pectin by three pure cultures of ruminal bacteria. Applied and Environmental Microbiology, 1989, 55(9): 2247-2250.[41]Min B R, Attwood G T, Reilly K, Sun W, Peters J S, Barry T N, McNabb W C. Lotus corniculatus condensed tannins decrease in vivo populations of proteolytic bacteria and affect nitrogen metabolism in the rumen of sheep. Canadian Journal of Microbiology, 2002, 48(10): 911-921.[42]李成云, 袁英良, 朴光一. 缩合单宁对瘤胃挥发性脂肪酸及微生物生长的影响. 饲料研究, 2010(11): 5-7.Li C Y, Yuang Y L, Piao G Y. The effects of condensed tannins on the volatile fatty acids and the growth of microorganism in the rumen. Feed Research, 2010(11): 5-7. (in Chinese)[43]金龙. 紫色达利菊提取缩合单宁对大肠杆菌和瘤胃氮代谢以及瘤胃微生物的影响[D]. 哈尔滨: 东北农业大学, 2011.Jin L. Effects of condensed tannins from purple prairie clover on fecal shedding of Escherichia coli by beff cattle and on rumen fermentation and rumen bacteria[D]. Harbin: Northeast Agricultural University, 2011. (in Chinese)[44]Jones G A, McAllister T A, Muir A D, Cheng K J. Effects of sainfoin (Onobrychis viciifolia Scop.) condensed tannins on growth and proteolysis by four strains of ruminal bacteria. Applied and Environmental Microbiology, 1994, 60(4): 1374-1378.[45]Ramsak A, Peterka M, Tajima K, Martin JC, Wood J, Johnston M E A, Aminov R I, Flint H J, Avgustin G. Unravelling the genetic diversity of ruminal bacteria belonging to the CFB phylum. FEMS Microbiology Ecology, 2000, 33(1): 69-79. |
| No related articles found! |
|
||