





中国农业科学 ›› 2020, Vol. 53 ›› Issue (24): 4969-4981.doi: 10.3864/j.issn.0578-1752.2020.24.001
司旭阳1(
),贾哓玮1(
),张洪艳1,贾羊羊1,田士军1,张科2(
),潘延云1(
)
收稿日期:2020-03-23
接受日期:2020-06-02
出版日期:2020-12-16
发布日期:2020-12-28
联系方式:
司旭阳,E-mail: sixuyanglove@163.com。|贾哓玮,E-mail: jia999666@126.com。
基金资助:
SI XuYang1(
),JIA XiaoWei1(
),ZHANG HongYan1,JIA YangYang1,TIAN ShiJun1,ZHANG Ke2(
),PAN YanYun1(
)
Received:2020-03-23
Accepted:2020-06-02
Published:2020-12-16
Online:2020-12-28
摘要:
【目的】探知小麦基因组序列中肌醇磷脂依赖的磷脂酶C(PLC)的编码基因,解析小麦中PLC基因的结构与进化特征,揭示TaPLC基因在小麦各组织中的表达模式及其响应盐胁迫和干旱胁迫过程中的表达规律,以便深入分析小麦TaPLC基因调节小麦应答盐或干旱胁迫中的生理作用。【方法】基于Ensembl Plants全基因组数据库,以水稻和拟南芥PLC基因为参考序列,检索小麦TaPLC基因家族(
司旭阳,贾哓玮,张洪艳,贾羊羊,田士军,张科,潘延云. 中国春小麦肌醇磷脂依赖的磷脂酶C基因的全基因组鉴定及表达分析[J]. 中国农业科学, 2020, 53(24): 4969-4981.
SI XuYang,JIA XiaoWei,ZHANG HongYan,JIA YangYang,TIAN ShiJun,ZHANG Ke,PAN YanYun. Genomic Profiling and Expression Analysis of Phosphatidylinositol- specific PLC Gene Families Among Chinese Spring Wheat[J]. Scientia Agricultura Sinica, 2020, 53(24): 4969-4981.
表1
小麦TaPLC基因家族各成员的分子和生化特征"
| 基因名称 Gene name | 基因ID Gene ID | 染色体定位a Chromosomal location | 开放阅读框 Open reading frame (bp) | 蛋白质b Protein | ||
|---|---|---|---|---|---|---|
| 大小 Size (aa) | 分子量 MW (kD) | 等电点 pI | ||||
| TaPLC1A | TraesCS1A02G069300 | 1A:51700021—51707185 | 1758 | 585 | 66.01 | 6.07 |
| TaPLC1D | TraesCS1D02G071800 | 1D:52338417—52345805 | 1761 | 586 | 66.19 | 6.03 |
| TaPLC2A | TraesCS2A02G084000 | 2A:38534860—38538480 | 1830 | 609 | 68.5 | 5.91 |
| TaPLC2B | TraesCS2B02G098500 | 2B:58321242—58325230 | 1821 | 606 | 68.22 | 6.06 |
| TaPLC2D | TraesCS2D02G082000 | 2D:35259471—35263395 | 1824 | 607 | 68.45 | 5.88 |
| TaPLC3A | TraesCS4A02G109000 | 4A:129086595—129090166 | 1902 | 633 | 71.11 | 5.54 |
| TaPLC3B | TraesCS4B02G195200 | 4B:420197892—420201623 | 1902 | 633 | 71.00 | 5.75 |
| TaPLC3D | TraesCS4D02G195800 | 4D:340085748—340090648 | 1902 | 633 | 71.05 | 5.84 |
| TaPLC4A | TraesCS5A02G155300 | 5A:333407514—333413175 | 1773 | 590 | 65.73 | 6.05 |
| TaPLC4B | TraesCS5B02G153600 | 5B:283008744—283014326 | 1770 | 589 | 65.65 | 6.06 |
| TaPLC4D | TraesCS5D02G160300 | 5D:250061407—250066699 | 1770 | 589 | 65.65 | 6.06 |
表2
TaPLC基因表达蛋白的亚细胞分布特征"
| 基因Gene | 亚细胞定位Subcellular localization |
|---|---|
| TaPLC1A | 线粒体:8,叶绿体:4,细胞核:1 Mito: 8, chlo: 4, nucl: 1 |
| TaPLC1D | 线粒体:8,叶绿体:4,细胞核:1 Mito: 8, chlo: 4, nucl: 1 |
| TaPLC2A | 叶绿体:7,细胞核:3,线粒体:2.5,线粒体基质:2 Chlo: 7, nucl: 3, mito: 2.5, cyto_mito: 2 |
| TaPLC2B | 叶绿体:6,线粒体:5.5,线粒体基质:3.5,细胞核:1 Chlo: 6, mito: 5.5, cyto_mito: 3.5, nucl: 1 |
| TaPLC2D | 叶绿体:7,线粒体:4.5,线粒体基质:3,细胞核:1 Chlo: 7, mito: 4.5, cyto_mito: 3, nucl: 1 |
| TaPLC3A | 细胞质:8,细胞核:4,叶绿体:1 Cyto: 8, nucl: 4, chlo: 1 |
| TaPLC3B | 细胞质:8,细胞核:3,叶绿体:1,线粒体:1 Cyto: 8, nucl: 3, chlo: 1, mito: 1 |
| TaPLC3D | 细胞质:6,细胞核:3,线粒体:2,过氧化物:2 Cyto: 6, nucl: 3, mito: 2, pero: 2 |
| TaPLC4A | 线粒体:10,叶绿体和线粒体:6.83333,线粒体基质:5.83333,叶绿体:2.5 Mito: 10, chlo_mito: 6.83333, cyto_mito: 5.83333, chlo: 2.5 |
| TaPLC4B | 线粒体:10,叶绿体和线粒体:6.83333,线粒体基质:5.83333,叶绿体:2.5 Mito: 10, chlo_mito: 6.83333, cyto_mito: 5.83333, chlo: 2.5 |
| TaPLC4D | 线粒体:10,叶绿体和线粒体:6.83333,线粒体基质:5.83333,叶绿体:2.5 Mito: 10, chlo_mito: 6.83333, cyto_mito: 5.83333, chlo: 2.5 |
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