中国农业科学 ›› 2009, Vol. 42 ›› Issue (8): 2943-2948 .doi: 10.3864/j.issn.0578-1752.2009.08.037

• 畜牧·资源昆虫 • 上一篇    下一篇

西方蜜蜂(Apis mellifera L.)sRNA的富集与文库检测

陈 璇,俞晓敏,郑火青,蔡亦梅,胡福良

  

  1. (浙江大学动物科学学院)
  • 收稿日期:2008-10-21 修回日期:2008-11-23 出版日期:2009-08-10 发布日期:2009-08-10
  • 通讯作者: 胡福良

Separation and Enrichment of sRNAs from Honeybee (Apis mellifera L.) and Its Quality Detection by Library Construction

CHEN Xuan, YU Xiao-min, ZHENG Huo-qing, CAI Yi-mei, HU Fu-liang   

  1. (浙江大学动物科学学院)
  • Received:2008-10-21 Revised:2008-11-23 Online:2009-08-10 Published:2009-08-10
  • Contact: HU Fu-liang

摘要:

【目的】提取及扩增蜜蜂(Apis mellifera L)sRNA,并构建文库检测富集结果是否满足高通量测序研究要求。【方法】取蜜蜂3个级型不同发育阶段个体作为材料,分别提取总RNA后混合,从中分离出15~40nt的sRNA,反转成cDNA后构建文库,进行蓝白斑筛选。挑选288个单克隆进行测序,对测序结果进行分析。【结果】有效序列为214条,插入的cDNA片段大小范围为15~39 bp。其中,sme-miR-71c miRNA 65条,ncRNA(包括tm-RNA、intron_ghI、5.8s rRNA)5条,tRNA 28条,siRNA及其他sRNA 33条, CDS 1条,未知序列82条。【结论】本实验采用的方法能有效富集蜜蜂sRNA,能够满足高通量测序从中识别出蜜蜂miRNA的研究。

关键词: 西方蜜蜂(Apis mellifera L.), sRNA富集, miRNA文库, 直接克隆法, 高通量测序

Abstract:

【Objective】 The aim of this study is to separate and enrich sRNAs from honey bee (Apis mellifera L.), and construct a library to test whether these sRNAs could meet requirements of high-throughput sequencing research. 【Method】 sRNAs (15-40 nt) from the queen, worker and drone bees at different development stages were separated and enriched, then performed reverse transcription on adapter ligated sRNAs followed by PCR amplification. After constructing the cDNA library, blue-white selection was performed and 288 single clones were selected for sequencing and analysis. 【Result】 214 high quality sequences of 15-39 bp, including 65 sme-miR-71c (mir-2), 5 ncRNAs containing tm-RNA, intron_ghI and 5.8S rRNA, 28 tRNAs, 33 siRNAs and other sRNAs, 1 CDS, and 82 not mapped sequences, were obtained. 【Conclusion】 This result indicates that the sRNA enrichment is effective and the samples we prepared could be used for high-throughput sequencing.

Key words: honeybee (Apis mellifera L.), sRNA enrichment, miRNA library, direct cloning method, high-throughput sequencing methods