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Comparative transcriptome and lipidome reveal that a low K+ signal effectively alleviates the effect induced by Ca2+ deficiency in cotton fibers
GUO Kai, GAO Wei, ZHANG Tao-rui, WANG Zu-ying, SUN Xiao-ting, YANG Peng, LONG Lu, LIU Xue-ying, WANG Wen-wen, TENG Zhong-hua, LIU Da-jun, LIU De-xin, TU Li-li, ZHANG Zheng-sheng
2023, 22 (8): 2306-2322.   DOI: 10.1016/j.jia.2023.01.002
Abstract194)      PDF in ScienceDirect      
Calcium (Ca2+) plays an important role in determining plant growth and development because it maintains cell wall and
membrane integrity. Therefore, understanding the role of Ca2+ in carbon and lipid metabolism could provide insights
into the dynamic changes in cell membranes and cell walls during the rapid elongation of cotton fibers. In the present
study, we found that the lack of Ca2+ promoted fiber elongation and rapid ovule expansion, but it also caused tissue
browning in the ovule culture system. RNA-sequencing revealed that Ca2+ deficiency induced cells to be highly oxidized,
and the expression of genes related to carbon metabolism and lipid metabolism was activated significantly. All gene
members of nine key enzymes involved in glycolysis were up-regulated, and glucose was significantly reduced in Ca2+
deficiency-treated tissues. Ca2+ deficiency adjusted the flowing of glycolysis metabolic. However, low K+ recovered
the expression levels of glycolysis genes and glucose content caused by Ca2+ deficiency. Electrospray ionizationtandem
mass spectrometry technology was applied to uncover the dynamic profile of lipidome under Ca2+ and K+
interacted conditions. Ca2+ deficiency led to the decrease of fatty acid (FA), diacylglycerol (DAG), glycolipid and the
significant increase of triacylglycerol (TAG), phospholipid phosphatidylethanolamine (PE), phosphatidylglycerol (PG),
and PC (phosphatidylcholine). Low K+ restored the contents of FA, phospholipids, and glycolipids, effectively relieved
the symptoms caused by Ca2+ deficiency, and recovered the development of fiber cells. This study revealed dynamic
changes in transcript and metabolic levels and uncovered the signaling interaction of Ca2+ deficiency and low K+ in
glycolysis and lipid metabolism during fiber development.
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Transfer characteristics of nitrogen fixed by leguminous green manure crops when intercropped with maize in northwestern China
LIU Rui, ZHOU Guo-peng, CHANG Dan-na, GAO Song-juan, HAN Mei, ZHANG Jiu-dong, SUN Xiao-feng, CAO Wei-dong
2022, 21 (4): 1177-1187.   DOI: 10.1016/S2095-3119(21)63674-2
Abstract162)      PDF in ScienceDirect      
To ascertain the possibility of cultivating maize using biological nitrogen fixation (BNF) by leguminous green manure crops in maize/leguminous green manure intercropping systems, BNF and nitrogen (N) transfer were studied in Xining and Wuwei, two typical northwestern Chinese cities.  The experimental treatments included monocultured maize, monocultured green manures (hairy vetch and common vetch), and their intercropping systems.  The proportions of N derived from the atmosphere (%Ndfa) in intercropping systems were not significantly different from that in monocultured green manure systems at either experimental site, except for that in hairy vetch (HV) in Xining.  The amount of N derived from the atmosphere (Ndfa) of common vetch (CV) significantly decreased from 1.16 and 1.10 g/pot in monoculture to 0.77 and 0.55 g/pot when intercropped with maize, in Xining and Wuwei, respectively, and the Ndfa of HV when intercropped significantly decreased from 1.02 to 0.48 g/pot in Xining.  In the intercropping systems in Xining and Wuwei, the amounts of N transferred (Ntransfer) from CV to maize were 21.54 and 26.81 mg/pot, accounting for 32.9 and 5.9% respectively of the N accumulation in maize, and the values of Ntransfer from HV to maize were 39.61 and 46.22 mg/pot, accounting for 37.0 and 23.3%, respectively, of the N accumulation in maize.  Path analysis showed that soil nutrient and green manure biomass were mainly related to Ndfa, and that δ15N had a primary relationship with Ntransfer.  We found that 5.9–37.0% of N accumulation in maize was transferred from green manures, and that the N transfer ability to maize of HV was higher than that of CV.  In conclusion, intercropping with leguminous green manures provided a feasible way for maize to effectively utilize biologically fixed N.
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Interactions between phosphorus availability and microbes in a wheat–maize double cropping system: a reduced fertilization scheme
YU Xiao-jing, CHEN Qi, SHI Wen-cong, GAO Zheng, SUN Xiao, DONG Jing-jing, LI Juan, WANG Heng-tao, GAO Jian-guo, LIU Zhi-guang, ZHANG Min
2022, 21 (3): 840-854.   DOI: 10.1016/S2095-3119(20)63599-7
Abstract197)      PDF in ScienceDirect      
Mechanisms controlling phosphorus (P) availability and the roles of microorganisms in the efficient utilization of soil P in the wheat–maize double cropping system are poorly understood.  In the present study, we conducted a pot experiment for four consecutive wheat–maize seasons (2016–2018) using calcareous soils with high (30.36 mg kg–1) and low (9.78 mg kg–1) initial Olsen-P content to evaluate the effects of conventional P fertilizer application to both wheat and maize (Pwm) along with a reduced P fertilizer application only to wheat (Pw).  The microbial community structure along with soil P availability parameters and crop yield were determined.  The results showed that the Pw treatment reduces the annual P input by 33.3% without affecting the total yield for at least two consecutive years as compared with the Pwm treatment in the high Olsen-P soil.  Soil water-soluble P concentrations in the Pw treatment were similar to those in the Pwm treatment at the 12-leaf collar stage when maize requires the most P.  Furthermore, the soil P content significantly affected soil microbial communities, especially fungal communities.  Meanwhile, the relative abundances of Proteobacteria and alkaline phosphatase (ALP) activity of Pw were significantly higher (by 11.4 and 13.3%) than those of Pwm in soil with high Olsen-P.  The microfloral contribution to yield was greater than that of soil P content in soil with high Olsen-P.  Relative abundances of Bacillus and Rhizobium were enriched in the Pw treatment compared with the Pwm treatment.  Bacillus showed a significant positive correlation with acid phosphatase (ACP) activity, and Rhizobium displayed significant positive correlations with ACP and ALP in soil with high Olsen-P, which may enhance P availability.  Our findings suggested that the application of P fertilization only to wheat is practical in high P soils to ensure optimal production in the wheat and maize double cropping system and that the soil P availability and microbial community may collaborate to maintain optimal yield in a wheat–maize double cropping system.


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Genetic dissection of the grain filling rate and related traits through linkage analysis and genome-wide association study in bread wheat
YU Hai-xia, DUAN Xi-xian, SUN Ai-qing, SUN Xiao-xiao, ZHANG Jing-juan, SUN Hua-qing, SUN Yan-yan, NING Tang-yuan, TIAN Ji-chun, WANG Dong-xue, LI Hao, FAN Ke-xin, WANG Ai-ping, MA Wu-jun, CHEN Jian-sheng
2022, 21 (10): 2805-2817.   DOI: 10.1016/j.jia.2022.07.032
Abstract215)      PDF in ScienceDirect      

Wheat grain yield is generally sink-limited during grain filling.  The grain-filling rate (GFR) plays a vital role but is poorly studied due to the difficulty of phenotype surveys.  This study explored the grain-filling traits in a recombinant inbred population and wheat collection using two highly saturated genetic maps for linkage analysis and genome-wide association study (GWAS).  Seventeen stable additive quantitative trait loci (QTLs) were identified on chromosomes 1B, 4B, and 5A.  The linkage interval between IWB19555 and IWB56078 showed pleiotropic effects on GFR1, GFRmax, kernel length (KL), kernel width (KW), kernel thickness (KT), and thousand kernel weight (TKW), with the phenotypic variation explained (PVE) ranging from 13.38% (KW) to 33.69% (TKW).  198 significant marker-trait associations (MTAs) were distributed across most chromosomes except for 3D and 4D.  The major associated sites for GFR included IWB44469 (11.27%), IWB8156 (12.56%) and IWB24812 (14.46%).  Linkage analysis suggested that IWB35850, identified through GWAS, was located in approximately the same region as QGFRmax2B.3-11, where two high-confidence candidate genes were present.  Two important grain weight (GW)-related QTLs colocalized with grain-filling QTLs.  The findings contribute to understanding the genetic architecture of the GFR and provide a basic approach to predict candidate genes for grain yield trait QTLs.

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Genome editing of the SfABCC2 gene confers resistance to Cry1F toxin from Bacillus thuringiensis in Spodoptera frugiperda
JIN Ming-hui, TAO Jia-hui, LI Qi, CHENG Ying, SUN Xiao-xu, WU Kong-ming, XIAO Yu-tao
2021, 20 (3): 815-820.   DOI: 10.1016/S2095-3119(19)62772-3
Abstract169)      PDF in ScienceDirect      
ATP-binding cassette transporter C2 (ABCC2) is known to be a receptor for Bacillus thuringiensis (Bt) toxins in several lepidopteran insects.  Mutations in the ABCC2 gene have been genetically linked to field-evolved resistance to the Cry1F toxin from Bt in Spodoptera frugiperda.  Here we generated a SfABCC2 knockout strain of S. frugiperda using the CRISPR/Cas9 system to provide further functional evidence of the role of this gene in susceptibility and resistance to Cry1F.  Results from bioassays showed that the SfABCC2 knockout S. frugiperda strain displayed 118-fold resistance to Cry1F compared with the parental DH19 strain, but no resistance to Vip3A toxin from Bt.  These results provide the first reverse genetic evidence for SfABCC2 as a functional receptor for Cry1F.
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Population occurrence of the fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae), in the winter season of China
YANG Xian-ming, SONG Yi-fei, SUN Xiao-xu, SHEN Xiu-jing, WU Qiu-lin, ZHANG Hao-wen, ZHANG Dan-dan, ZHAO Sheng-yuan, LIANG Ge-mei, WU Kong-ming
2021, 20 (3): 772-782.   DOI: 10.1016/S2095-3119(20)63292-0
Abstract106)      PDF in ScienceDirect      
Fall armyworm (FAW), Spodoptera frugiperda (J.E. Smith), has become an important pest in Chinese agricultural systems since its invasion on 11 December 2018.  After its establishment, FAW months in the year-round breeding region have become the main source population migrating to other areas in China.  Field investigations were conducted in tropical and subtropical regions to improve understanding of its year-round breeding area in China.  The results showed that FAW larval density was significantly correlated with the seasonal temperature of the location surveyed.  The FAW larvae maintained a high density in the tropical area and were frequently found in sites of the south subtropical region, but were absent from the north subtropical region and the northern part of the central subtropical region.  These results indicated that FAW can reproduce annually in the tropical and south subtropical regions of China, including Hainan, Taiwan and the southern area of Fujian, Guangdong, Guangxi, Guizhou, and Yunnan.  Hence, great effort should be made to monitor and control FAW in the year-round breeding region to suppress the population density of this area and to reduce migration of moths into northern parts of China.  This study clarifies the occurrence area of the pest in winter in China and provides much valuable information for its population forecasting and management.
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Case study on the first immigration of fall armyworm, Spodoptera frugiperda invading into China
SUN Xiao-xu, HU Chao-xing, JIA Hui-ru, WU Qiu-lin, SHEN Xiu-jing, ZHAO Sheng-yuan, JIANG Yu-ying, WU Kong-ming
2021, 20 (3): 664-672.   DOI: 10.1016/S2095-3119(19)62839-X
Abstract230)      PDF in ScienceDirect      
The fall armyworm (FAW), Spodoptera frugiperda is one of the most damaging crop pests, and it has become major threat to the food security of many countries.  In order to monitor possible invasion of this pest into China, a searchlight trap was established in March 2018 in western Yunnan Province, China, where it has served as the “first station” for many pests that have migrated from Myanmar to China.  A number of suspected FAW moths were captured and identified by DNA sequencing.  The results showed that the FAW moth was first captured on December 11 and formed its first immigration peak in mid-December 2018.  DNA detection revealed that the early invading FAW population was the “corn-strain”.  The field survey indicated that the pest mainly colonized corn in Pu’er, Dehong and Baoshan areas.  Migration trajectory simulation implied that the moths might have mainly come from the eastern area in the mid-latitude region of Myanmar (20–25°N, 94–100°E).  This case study confirmed the first immigration of FAW into China, and will be helpful for guiding monitoring and management work to control this pest.
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Comparative transcriptome analysis of the effect of different heat shock periods on the unfertilized ovule in watermelon (Citrullus lanatus)
ZHU Ying-chun, SUN De-xi, DENG Yun, AN Guo-lin, LI Wei-hua, SI Wen-jing, LIU Jun-pu, SUN Xiao-wu
2020, 19 (2): 528-540.   DOI: 10.1016/S2095-3119(19)62777-2
Abstract111)      PDF in ScienceDirect      

In vitro gynogenesis is an important tool used in haploid or homozygous double-haploid plant breeding.  However, because of low repeatability, embryoid induction rate and quality, the molecular mechanisms remain poorly understood.  Heat shock treatment can promote the transformation of the gametophytic pathway into the sporophyte pathway, which induces the occurrence of haploid.  In this study, unfertilized ovaries were heat shocked for 0 h (A0) before flowering and for 0 h (A1), 4 h (A3), 8 h (A5), 12 h (A7), and 24 h (A8), respectively, at 37°C at the first day of the flowering stage.  The ovule enlargement rate was increased from 0% at 25°C to 96.8% at 37°C (24 h treatment).  Thus, we aimed to investigate the gene expression patterns in unfertilized ovules of watermelon after different periods of heat shock by using RNA-Seq technology.  The results showed that compared with A3, A5, A7, and A8, the biosynthesis of amino acid, glycine, serine and threonine metabolic pathways in A1 has changed significantly.  This indicated that heat shock treatment affected the synthesis and transformation of amino acids during ovule expansion.  The transcriptome data suggested gene expressions of ovule growth were significantly changed by heat-specific influences.  The results provide new information on the complex relationship between in vitro gynogenesis and temperature.  This provides a basis for further study of the mechanism of heat shock affecting the expansion of watermelon ovule. 

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Regulation of influenza virus infection by microRNAs
ZOU Zhong, GONG Wen-xiao, HUANG Kun, SUN Xiao-mei, JIN Mei-lin
2019, 18 (7): 1421-1427.   DOI: 10.1016/S2095-3119(18)62134-3
Abstract211)      PDF in ScienceDirect      
MicroRNAs (miRNAs) are small noncoding RNAs of 18–25 nucleotides (nt) in length that represent key regulators of many normal cellular functions through the inhibition of mRNA translation and mRNA degradation.  To date, over 2 500 mature miRNAs have been identified in plants, animals and several types of viruses.  Influenza A virus (IAV), which is a negative-sense, single-stranded RNA virus, does not encode viral miRNA.  However, IAV infection can alter the expression of host miRNAs, either in cell culture or in host.  In turn, host miRNAs regulate IAV life cycle through directly binding to IAV genome or indirectly targeting host factors associated with viral replication.  In this review, we briefly summarized the role and significance of miRNA in relation to IAV pathogenesis.  Understanding the role of cellular miRNAs during viral infection may be beneficial to the identification of novel therapeutic strategies to block IAV replication.
 
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Baculovirus-expressed FAdV-4 penton base protein protects chicken against hepatitis-hydropericardium syndrome
ZHANG Jun-qin, WEI Yan-ming, HUANG Kun, SUN Xiao-mei, ZOU Zhong, JIN Mei-lin
2019, 18 (11): 2598-2604.   DOI: 10.1016/S2095-3119(19)62739-5
Abstract87)      PDF in ScienceDirect      
Hepatitis-hydropericardium syndrome (HHS) is an infectious disease caused by fowl adenovirus serotype 4 (FAdV-4).  Several structural and non-structural proteins of FAdV-4 have been expressed in Escherichia coli and baculovirus expression system to develop candidate subunit vaccines.  However, the protective efficiency of baculovirus-expressed penton base protein has not been assessed.  In this study, two recombinant capsid proteins, penton base and fiber-2, were constructed.  And then, penton base and fiber-2 were administrated alone or together to specific pathogen-free (SPF) chickens at 14 days of life and boosted at 28 days of life.  At 42 days of life, the immunized groups and the control group were challenged with FAdV-4 virulent strain.  Results show that inoculating penton base or penton base+fiber-2 provided 100% protection to the chickens.  All groups vaccinated with the recombinant protein produced detectable antibodies and showed no apparent lesions.  Thus, baculovirus-expressed penton base protein is a promising candidate subunit vaccine.
 
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Effect of in ovo zinc injection on the embryonic development, tissue zinc contents, antioxidation, and related gene expressions of broiler breeder eggs
SUN Xiao-ming, LIAO Xiu-dong, LU Lin, ZHANG Li-yang, MA Qiu-gang, XI Lin, LUO Xu-gang
2018, 17 (03): 648-656.   DOI: 10.1016/S2095-3119(17)61704-0
Abstract633)      PDF in ScienceDirect      
Two experiments were conducted to investigate the effect of in ovo zinc (Zn) injection on the embryonic development, tissue Zn contents, antioxidation and related gene expressions of fertilized eggs of Arbor Acres broiler breeders.  Experiment 1 was conducted to determine an optimal embryonic age for early in ovo injection.  A total of 720 fertilized eggs with similar weights were randomly allotted to 4 treatments with 6 replicates per treatment and 30 eggs per replicate in a completely randomized design.  The eggs were injected with 0.1 mL sterilized water at 3, 6 and 9 embryonic days of incubation (E3, E6 and E9) or non-injection (the control), respectively.  The results from experiment 1 showed that E3 and E6 injections increased (P<0.05) the embryonic mortalities, and decreased (P<0.05) hatchabilities compared to the non-injected control, but no differences (P>0.05) between E9 injection and the non-injected control were observed in either embryonic mortality or hatchability.  The findings suggest that the E9 is the optimal embryonic age for early in ovo injection.  In experiment 2, a total of 672 fertilized eggs with similar weights were randomly allocated to 7 treatments with 6 replicates per treatment and 16 eggs per replicate in a completely randomized design.  The eggs were injected with 0 (the negative control), 50, 100, 150, 200, or 250 μg Zn/egg as reagent grade ZnSO4·7H2O in a 0.1-mL solution, or non-injection (the positive control), respectively at E9–10.  The results from the experiment 2 demonstrated that no differences (P>0.05) among 50 and 100 μg Zn/egg groups and the negative control were observed in the embryonic mortality and hatchability, however, the injection of 200 μg Zn/egg increased (P<0.05) the embryonic mortality, and injections of 150 and 200 μg Zn/egg decreased (P<0.05) hatchabilities compared with the controls.  The embryonic tibia Zn contents at E20 were increased (P<0.05) by injections of 150, 200 and 250 μg Zn/egg.  Zinc injection did not affect (P>0.05) malonaldehyde (MDA) contents, copper- and Zn-containing superoxide dismutase (CuZnSOD) activities and mRNA expression levels in the liver and heart of chick embryos at E15 and E20.  Compared with the negative control, injections of 50, 150 and 200 μg Zn/egg up-regulated (P<0.05) the metallothionein (MT) mRNA expression levels in the embryonic liver at E20.  These results indicated that in ovo Zn injections increased Zn contents in the embryonic tibia and MT mRNA expression levels in the embryonic liver at E20, however, injections of 150–200 µg Zn/egg were harmful to the embryonic development.
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Development of synthetic volatile attractant for male Ectropis obliqua moths
SUN Xiao-ling, LI Xi-wang, XIN Zhao-jun, HAN Juan-juan, RAN Wei, LEI Shu
2016, 15 (7): 1532-1539.   DOI: 10.1016/S2095-3119(15)61294-1
Abstract1796)      PDF in ScienceDirect      
    The tea geometrid Ectropis obliqua is one of the most serious leaf-feeding insect pests in tea (Camellia sinensis) in East Asia. Although several volatile chemicals emitted from tea plants have been reported to be attractive to E. obliqua moths, no synthetic attractants for E. obliqua moths have been developed. By measuring the behavioral responses of the moth to a series of chemicals in the lab, we found that a blend containing a ternary mixture containing (Z)-3-hexenal, (Z)-3-hexenyl hexanoate and benzyl alcohol clearly attracted to E. obliqua moths of both sex and that (Z)-3-hexenyl acetate could enhance the attractiveness of the ternary blend. Moreover, we found that the volatiles emitted from the plant-E. obliqua larva complex have the same attractiveness as: 1) the blend of volatiles containing the ternary mixture and 2) the blend containing (Z)-3-hexenyl acetate plus the ternary mixture to both male and female moths. In a field bioassay, more male moths were observed on traps that were baited with the blend containing (Z)-3-hexenyl acetate plus the ternary mixture than on control traps. Our study raises the tantalizing possibility that synthetic blends could be deployed as attractants for pests in the field.
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SlSOM inhibits seed germination by regulating the expression of ABA/GA metabolic genes and SlABI5 in Solanum lycopersicum
SUN Xiao-chun, GAO Yong-feng, ZHANG Ning, LI Hui-rong, YANG Shu-zhang, LIU Yong-sheng
2015, 14 (2): 326-336.   DOI: 10.1016/S2095-3119(14)60859-5
Abstract1815)      PDF in ScienceDirect      
SOM encodes a nucleus-localized CCCH-type zinc finger protein and negatively regulates seed germination in Arabidopsis thaliana. We have previously demonstrated that ectopic expression of SlABI3, an important transcription factor in abscisic acid (ABA) signaling pathway, resulted in alteration of SlSOM expression patterns in both leaf and seed of tomato. In this study, we aimed to elucidate the function of tomato SlSOM in regarding to seed germination and seedling development. Here, we constructed SlSOM over-expression vector pBI121-SOM driven by CaMV 35S promoter, and the recombinant plasmid was incorporated into wild-type tomato by the method of Agrobacterium tumefaciens-mediated transformation. The result showed that over-expression of SlSOM conferred enhanced responses to exogenous ABA application during seed germination and seedling development. In addition, ectopic expression of SlSOM resulted in the alteration of expression level of ABA/GA (gibberellins) metabolic genes, such as SlABA1, SlCYP707A1, SlGA3ox2, and SlGA2ox4, in both leaf and seed. The ABA anabolic gene SlABA1 and the GA catabolic gene SlGA2ox4 were up-regulated while the ABA catabolic gene SlCYP707A1 and the GA anabolic gene SlGA3ox2 were down-regulated. Compared to wild type, the expression level of SlABI5 was increased by about 40–50% in transgenic seeds while adding exogenous ABA treatment. These results support the notion that SlSOM inhibits seed germination by regulating ABA/GA metabolic genes and SlABI5 expression in Solanum lycopersicum.
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Relationship Between Polyamines Metabolism and Cell Death in Roots of Malus hupehensis Rehd. Under Cadmium Stress
JIANG Qian-qian, YANG Hong-qiang, SUN Xiao-li, LI Qiang, RAN Kun, ZHANG Xin-rong
2012, 12 (7): 1129-1136.   DOI: 10.1016/S1671-2927(00)8638
Abstract1411)      PDF in ScienceDirect      
The free putrescine (Put) content, the hydrogen peroxide (H2O2) content and the polyamine oxidase (PAO) activity in roots of Malus hupehensis Rehd. var. pinyiensis Jiang (PYTC) were significantly increased, and reached its peak at 1, 2 and 6 h, respectively, under cadmium treatment. The free spermine (Spm) and spermidine (Spd) contents were dramatically decreased, and reached the minimum value at 4-6 h, then remained relatively stable. The change in total free polyamines (PAs) content was consistent with that of free Put. The number of root dead cells was gradually increased after treatment for 24 h, and the typical characteristics of programmed cell death (PCD) were displayed at 48 h. Throughout the Cd treatment process, changes in PAs metabolism appeared to be prior to cell death increase, and the H2O2 content was always maintained at a high level. These results indicated that polyamines could initiate cell death by generating H2O2 in roots of Malus hupehensis Rehd. under CdSO4 stress.
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