|
Abeysingha D N, Ozga J A, Strydhorst S, Doyle P, Iqbal M, Yang R C, Reinecke D M. 2021. The effect of auxins on amelioration of heat stress-induced wheat (Triticum aestivum L.) grain loss. Journal of Agronomy and Crop Science, 207, 970–983.
Arya H, Singh M B, Bhalla P L. 2024. Overexpression of GmPIF4b affects morpho-physiological traits to reduce heat-induced grain loss in soybean. Plant Physiology and Biochemistry, 206, 108233.
Boruc J, Van den Daele H, Hollunder J, Rombauts S, Mylle E, Hilson P, Inzé D, De Veylder L, Russinova E. 2010. Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network. The Plant Cell, 22, 1264–1280.
Caillaud M C, Paganelli L, Lecomte P, Deslandes L, Quentin M, Pecrix Y, Le Bris M, Marfaing N, Abad P, Favery B. 2009. Spindle assembly checkpoint protein dynamics reveal conserved and unsuspected roles in plant cell division. PLoS ONE, 4, e6757.
Cao X, Wang H, Zhuang D, Zhu H, Du Y, Cheng Z, Cui W, Rogers H J, Zhang Q, Jia C, Yang Y, Tai P, Xie F, Liu W. 2018. Roles of MSH2 and MSH6 in cadmium-induced G2/M checkpoint arrest in Arabidopsis roots. Chemosphere, 201, 586–594.
Challinor A J, Watson J, Lobell D B, Howden S M, Smith D R, Chhetri N. 2014. A meta-analysis of crop yield under climate change and adaptation. Nature Climate Change, 4, 287–291.
Chen C, Wu Y, Li J, Wang X, Zeng Z, Xu J, Liu Y, Feng J, Chen H, He Y, Xia R. 2023. TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining. Molecular Plant, 16, 1733–1742.
Chen Z, Wei Y, Hou J, Huang J, Zhu X, Zhuang B, Han J, Peng H, Wang Y, Liu Y. 2024. Transcriptional atlas for embryo development in soybean. Seed Biology, 3, e022.
Chennupati P, Seguin P, Liu W. 2011. Effects of high temperature stress at different development stages on soybean isoflavone and tocopherol concentrations. Journal of Agricultural and Food Chemistry, 59, 13081–13088.
Cui K, Lin Y, Zhou X, Li S, Liu H, Zeng F, Zhu F, Ouyang G, Zeng Z. 2015. Comparison of sample pretreatment methods for the determination of multiple phytohormones in plant samples by liquid chromatography-electrospray ionization-tandem mass spectrometry. Microchemical Journal, 121, 25–31.
Ding D, Muthuswamy S, Meier I. 2012. Functional interaction between the Arabidopsis orthologs of spindle assembly checkpoint proteins MAD1 and MAD2 and the nucleoporin NUA. Plant Molecular Biology, 79, 203–216.
Ding X, Guo J, Lv M, Wang H, Sheng Y, Liu Y, Gai J, Yang S. 2023. The miR156b-GmSPL2b module mediates male fertility regulation of cytoplasmic male sterility-based restorer line under high-temperature stress in soybean. Plant Biotechnology Journal, 21, 1542–1559.
Ding X, Guo J, Zhang Q, Yu L, Zhao T, Yang S. 2021. Heat-responsive miRNAs participate in the regulation of male fertility stability in soybean CMS-based F1 under high temperature stress. International Journal of Molecular Sciences, 22, 2446.
Ding X, Guo Q, Li Q, Gai J, Yang S. 2020. Comparative transcriptomics analysis and functional study reveal important role of high-temperature stress response gene GmHSFA2 during flower bud development of CMS-based F1 in soybean. Frontiers in Plant Science, 11, 600217.
Djanaguiraman M, Prasad P V, Boyle D L, Schapaugh W T. 2013. Soybean pollen anatomy, viability and pod set under high temperature stress. Journal of Agronomy and Crop Science, 199, 171–177.
Djanaguiraman M, Schapaugh W, Fritschi F, Nguyen H, Prasad P V V. 2019. Reproductive success of soybean (Glycine max L. Merril) cultivars and exotic lines under high daytime temperature. Plant, Cell & Environment, 42, 321–336.
Egli D B, Bruening W P. 2006. Temporal profiles of pod production and pod set in soybean. European Journal of Agronomy, 24, 11–18.
Fan J, Shen Y, Chen C, Chen X, Yang X, Liu H, Chen R, Liu S, Zhang B, Zhang M, Zhou G, Wang Y, Sun H, Jiang Y, Wei X, Yang T, Liu Y, Tian D, Deng Z, Xu X, Liu X, Tian Z. 2025. A large-scale integrated transcriptomic atlas for soybean organ development. Molecular Plant, 18, 669–689.
Floková K, Tarkowská D, Miersch O, Strnad M, Wasternack C, Novák O. 2014. UHPLC-MS/MS based target profiling of stress-induced phytohormones. Phytochemistry, 105, 147–157.
Galindo-Trigo S, Grand T M, Voigt C A, Smith L M. 2020. A malectin domain kinesin functions in pollen and seed development in Arabidopsis. Journal of Experimental Botany, 71, 1828–1841.
Gao J, Zhang Y, Xu C, Wang X, Wang P, Huang S. 2023. Abscisic acid collaborates with lignin and flavonoid to improve pre-silking drought tolerance by tuning stem elongation and ear development in maize (Zea mays L.). The Plant Journal, 114, 437–454.
He Y, Zhang F. 2023. Study of regulating effect of auxin on floret opening in rice. Acta Agronomica Sinica, 49, 1690–1698. (in Chinese)
Hepworth J, Lenhard M. 2014. Regulation of plant lateral-organ growth by modulating cell number and size. Current Opinion in Plant Biology, 17, 36–42.
Hu Y, Liu Y, Lu L, Tao J J, Cheng T, Jin M, Wang Z Y, Wei J J, Jiang Z H, Sun W C, Liu C L, Gao F, Zhang Y, Li W, Bi Y D, Lai Y C, Zhou B, Yu D Y, Yin C C, Wei W, et al. 2023. Global analysis of seed transcriptomes reveals a novel PLATZ regulator for seed size and weight control in soybean. New Phytologist, 240, 2436–2454.
Ito H, Kanayama Y, Shibuya T, Mohammed S A, Nishiyama M, Kato K. 2022. Effect of short-term temperature stress on fruit set and the expression of an auxin reporter gene and auxin synthesis genes in tomato. Scientia Horticulturae, 300, 111039.
de Jager S M, Scofield S, Huntley R P, Robinson A S, den Boer B G, Murray J A. 2009. Dissecting regulatory pathways of G1/S control in Arabidopsis: Common and distinct targets of CYCD3;1, E2Fa and E2Fc. Plant Molecular Biology, 71, 345–365.
Kaur H, Ozga J A, Reinecke D M. 2021. Balancing of hormonal biosynthesis and catabolism pathways, a strategy to ameliorate the negative effects of heat stress on reproductive growth. Plant, Cell & Environment, 44, 1486–1503.
Kim E H, Ro H M, Kim S L, Kim H S, Chung I M. 2012. Analysis of isoflavone, phenolic, soyasapogenol, and tocopherol compounds in soybean [Glycine max (L.) Merrill] germplasms of different seed weights and origins. Journal of Agricultural and Food Chemistry, 60, 6045–6055.
Klemm T, Mannuß A, Kobbe D, Knoll A, Trapp O, Dorn A, Puchta H. 2017. The DNA translocase RAD5A acts independently of the other main DNA repair pathways, and requires both its ATPase and RING domain for activity in Arabidopsis thaliana. The Plant Journal, 91, 725–740.
Kobbe D, Kahles A, Walter M, Klemm T, Mannuss A, Knoll A, Focke M, Puchta H. 2016. AtRAD5A is a DNA translocase harboring a HIRAN domain which confers binding to branched DNA structures and is required for DNA repair in vivo. The Plant Journal, 88, 521–530.
Koens K B, Nicoloso F T, Harteveld M, Libbenga K R, Kijne J W. 1995. Auxin starvation results in G2-arrest in suspension-cultured tobacco cells. Journal of Plant Physiology, 147, 391–396.
Kono A, Umeda-Hara C, Lee J, Ito M, Uchimiya H, Umeda M. 2003. Arabidopsis D-type cyclin CYCD4;1 is a novel cyclin partner of B2-type cyclin-dependent kinase. Plant Physiology, 132, 1315–1321.
Lau S, Slane D, Herud O, Kong J, Jürgens G. 2012. Early embryogenesis in flowering plants: Setting up the basic body pattern. Annual Review of Plant Biology, 63, 483–506.
Le B H, Wagmaister J A, Kawashima T, Bui A Q, Harada J J, Goldberg R B. 2007. Using genomics to study legume seed development. Plant Physiology, 144, 562–574.
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, van de Peer Y, Rouzé P, Rombauts S. 2002. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 30, 325–327.
Li F, Shao Y, Ejaz I, Chen Z, Wang Z, Wang X, Zhou S. 2025. A morphological and anatomical study for tracking the development of individual fruit of soybean (Glycine max L.). The Crop Journal, 13, 304–309.
Li F, Shao Y, Wang Z, Chen Z, Ling J, Wu G, Wang X, Zhou S. 2024. Yield compensation among plant regions improves soybean adaptation to short-term high-temperature stress during the reproductive period. Journal of Plant Physiology, 293, 154167.
Li G, Li Z, Yang Z, Leshem Y, Shen Y, Men S. 2021. Mitochondrial heat-shock cognate protein 70 contributes to auxin-mediated embryo development. Plant Physiology, 186, 1101–1121.
Li N, Xu R, Li Y. 2019. Molecular networks of seed size control in plants. Annual Review of Plant Biology, 70, 435–463.
Li X, Wu J, Yi F, Lai J, Chen J. 2023. High temporal-resolution transcriptome landscapes of maize embryo sac and ovule during early seed development. Plant Molecular Biology, 111, 233–248.
Liu L, Tong H, Xiao Y, Che R, Xu F, Hu B, Liang C, Chu J, Li J, Chu C. 2015. Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice. Proceedings of the National Academy of Sciences of the United States of America, 112, 11102–11107.
Liu M, Zhou Y, Sun J, Mao F, Yao Q, Li B, Wang Y, Gao Y, Dong X, Liao S, Wang P, Huang S. 2023. From the floret to the canopy: High temperature tolerance during flowering. Plant Communications, 4, 100629.
Liu Y, Du H, Li P, Shen Y, Peng H, Liu S, Zhou G A, Zhang H, Liu Z, Shi M, Huang X, Li Y, Zhang M, Wang Z, Zhu B, Han B, Liang C, Tian Z. 2020. Pan-genome of wild and cultivated soybeans. Cell, 182, 162–176.
Liu Y H, Offler C E, Ruan Y L. 2016. Cell wall invertase promotes fruit set under heat stress by suppressing ROS-independent cell death. Plant Physiology, 172, 163–180.
Lo S F, Cheng M L, Hsing Y C, Chen Y S, Lee K W, Hong Y F, Hsiao Y, Hsiao A S, Chen P J, Wong L I, Chen N C, Reuzeau C, Ho T D, Yu S M. 2020. Rice Big Grain 1 promotes cell division to enhance organ development, stress tolerance and grain yield. Plant Biotechnology Journal, 18, 1969–1983.
Mannuss A, Dukowic-Schulze S, Suer S, Hartung F, Pacher M, Puchta H. 2010. RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana. The Plant Cell, 22, 3318–3330.
Matsuo S, Kikuchi K, Nagasuga K, Ueno H, Imanishi S. 2018. Transcriptional regulation of auxin metabolic-enzyme genes during tomato fruit development. Scientia Horticulturae, 241, 329–338.
Medic J, Atkinson C, Hurburgh C R. 2014. Current knowledge in soybean composition. Journal of the American Oil Chemists' Society, 91, 363–384.
Menges M, de Jager S M, Gruissem W, Murray J A. 2005. Global analysis of the core cell cycle regulators of Arabidopsis identifies novel genes, reveals multiple and highly specific profiles of expression and provides a coherent model for plant cell cycle control. The Plant Journal, 41, 546–566.
Musacchio A, Salmon E D. 2007. The spindle-assembly checkpoint in space and time. Nature Reviews Molecular Cell Biology, 8, 379–393.
Nadeem M, Chen A, Hong H, Li D, Li J, Zhao D, Wang W, Wang X, Qiu L. 2021. GmMs1 encodes a kinesin-like protein essential for male fertility in soybean (Glycine max L.). Journal of Integrative Plant Biology, 63, 1054–1064.
Nayeri D F. 2014. Identification of transcription factors linked to cell cycle regulation in Arabidopsis. Plant Signaling & Behavior, 9, e972864.
Noguero M, Le Signor C, Vernoud V, Bandyopadhyay K, Sanchez M, Fu C, Torres-Jerez I, Wen J, Mysore K S, Gallardo K, Udvardi M, Thompson R, Verdier J. 2015. DASH transcription factor impacts Medicago truncatula seed size by its action on embryo morphogenesis and auxin homeostasis. The Plant Journal, 81, 453–466.
Ortiz A C, De Smet I, Sozzani R, Locke A M. 2022. Field-grown soybean shows genotypic variation in physiological and seed composition responses to heat stress during seed development. Environmental Experimental Botany, 195, 104768.
Oshino T, Miura S, Kikuchi S, Hamada K, Yano K, Watanabe M, Higashitani A. 2011. Auxin depletion in barley plants under high-temperature conditions represses DNA proliferation in organelles and nuclei via transcriptional alterations. Plant, Cell & Environment, 34, 284–290.
Ozga J A, Kaur H, Savada R P, Reinecke D M. 2017. Hormonal regulation of reproductive growth under normal and heat-stress conditions in legume and other model crop species. Journal of Experimental Botany, 68, 1885–1894.
Pan X, Welti R, Wang X. 2010. Quantitative analysis of major plant hormones in crude plant extracts by high-performance liquid chromatography–mass spectrometry. Nature Protocols, 5, 986–992.
Pedroza-Garcia J A, Xiang Y, De Veylder L. 2022. Cell cycle checkpoint control in response to DNA damage by environmental stresses. The Plant Journal, 109, 490–507.
Perkins S E, Alexander L V, Nairn J R. 2012. Increasing frequency, intensity and duration of observed global heatwaves and warm spells. Geophysical Research Letters, 39, L20714.
Perrot-Rechenmann C. 2010. Cellular responses to auxin: Division versus expansion. Cold Spring Harbor Perspective in Biology, 2, a001446.
Pines J. 2011. Cubism and the cell cycle: The many faces of the APC/C. Nature Reviews Molecular Cell Biology, 12, 427–438.
R Core Team. 2019. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
Ren D, Wang X, Yang M, Yang L, He G, Deng X W. 2019. A new regulator of seed size control in Arabidopsis identified by a genome-wide association study. New Phytologist, 222, 895–906.
Saitoh K, Wakui N, Mahmood T, Kuroda T. 1999. Differentiation and development of floral organs at each node and raceme order in an indeterminate type of soybean. Plant Production Science, 2, 47–50.
Sakata T, Oshino T, Miura S, Tomabechi M, Tsunaga Y, Higashitani N, Miyazawa Y, Takahashi H, Watanabe M, Higashitani A. 2010. Auxins reverse plant male sterility caused by high temperatures. Proceedings of the National Academy of Sciences of the United States of America, 107, 8569–8574.
Schmutz J, Cannon S B, Schlueter J, Ma J, Mitros T, Nelson W, Hyten D L, Song Q, Thelen J J, Cheng J, Xu D, Hellsten U, May G D, Yu Y, Sakurai T, Umezawa T, Bhattacharyya M K, Sandhu D, Valliyodan B, Lindquist E, et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature, 463, 178–183.
Schruff M C, Spielman M, Tiwari S, Adams S, Fenby N, Scott R J. 2006. The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs. Development, 133, 251–261.
Shannon P, Markiel A, Ozier O, Baliga NS, Wang J T, Ramage D, Amin N, Schwikowski B, Ideker T. 2003. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Research, 13, 2498–2504.
Shimotohno A, Aki S S, Takahashi N, Umeda M. 2021. Regulation of the plant cell cycle in response to hormones and the environment. Annual Review of Plant Biology, 72, 273–296.
Siebers M H, Yendrek C R, Drag D, Locke A M, Rios Acosta L, Leakey A D, Ainsworth E A, Bernacchi C J, Ort D R. 2015. Heat waves imposed during early pod development in soybean (Glycine max) cause significant yield loss despite a rapid recovery from oxidative stress. Global Change Biology, 21, 3114–3125.
Šimura J, Antoniadi I, Široká J, Tarkowská D, Strnad M, Ljung K, Novák O. 2018. Plant hormonomics: Multiple phytohormone profiling by targeted metabolomics. Plant Physiology, 177, 476–489.
Song Y, He J, Guo J, Xie Y, Ma Z, Liu Z, Niu C, Li X, Chu B, Tahir M M, Xu J, Ma F, Guan Q. 2024. The chromatin remodeller MdRAD5B enhances drought tolerance by coupling MdLHP1-mediated H3K27me3 in apple. Plant Biotechnology Journal, 22, 617–634.
Szklarczyk D, Gable A L, Lyon D, Junge A, Wyder S, Huerta-Cepas J, Simonovic M, Doncheva N T, Morris J H, Bork P, Jensen L J, Mering C V. 2019. STRING v11: Protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Research, 47, D607–D613.
Takahashi R, Kurosaki H, Yumoto S, Han O K, Abe J. 2001. Genetic and linkage analysis of cleistogamy in soybean. Journal of Heredity, 92, 89–92.
Tang R S, Zheng J C, Jin Z Q, Zhang D D, Huang Y H, Chen L G. 2008. Possible correlation between high temperature-induced floret sterility and endogenous levels of IAA, GAs and ABA in rice (Oryza sativa L.). Plant Growth Regulation, 54, 37–43.
Tian S, Wu J, Li F, Zou J, Liu Y, Zhou B, Bai Y, Sun M X. 2016. NtKRP, a kinesin-12 protein, regulates embryo/seed size and seed germination via involving in cell cycle progression at the G2/M transition. Scientific Reports, 6, 35641.
Tyug T S, Prasad K N, Ismail A. 2010. Antioxidant capacity, phenolics and isoflavones in soybean by-products. Food Chemistry, 123, 583–589.
Usadel B, Nagel A, Thimm O, Redestig H, Blaesing OE, Palacios-Rojas N, Selbig J, Hannemann J, Piques M C, Steinhauser D, Scheible W R, Gibon Y, Morcuende R, Weicht D, Meyer S, Stitt M. 2005. Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiology, 138, 1195–1204.
Wang X, Hu H, Li F, Yang B, Komatsu S, Zhou S. 2021. Quantitative proteomics reveals dual effects of calcium on radicle protrusion in soybean. Journal of Proteomics, 230, 103999.
Wang Y, Nie L, Ma J, Zhou B, Han X, Cheng J, Lu X, Fan Z, Li Y, Cao Y. 2022. Transcriptomic variations and network hubs controlling seed size and weight during maize seed development. Frontiers in Plant Science, 13, 828923.
Wang Y, Tao H, Tian B, Sheng D, Xu C, Zhou H, Huang S, Wang P. 2019. Flowering dynamics, pollen, and pistil contribution to grain yield in response to high temperature during maize flowering. Environmental Experimental Botany, 158, 80–88.
Wellburn A R. 1994. The spectral determination of chlorophyll a and chlorophyll b, as well as total carotenoids, using various solvents with spectrophotometers of different resolution. Journal of Plant Physiology, 144, 307–313.
Xu G, Singh S, Barnaby J, Buyer J, Reddy V, Sicher R. 2016. Effects of growth temperature and carbon dioxide enrichment on soybean seed components at different stages of development. Plant Physiology and Biochemistry, 108, 313–322.
Yang L, Song W, Xu C, Sapey E, Jiang D, Wu C. 2023. Effects of high night temperature on soybean yield and compositions. Frontiers in Plant Science, 14, 1065604.
Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y. 2012. Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa. Journal of Experimental Botany, 63, 1025–1038.
Zhao C, Liu B, Piao S, Wang X, Lobell D B, Huang Y, Huang M, Yao Y, Bassu S, Ciais P, Durand J L, Elliott J, Ewert F, Janssens I A, Li T, Lin E, Liu Q, Martre P, Müller C, Peng S, et al. 2017. Temperature increase reduces global yields of major crops in four independent estimates. Proceedings of the National Academy of Sciences of the United States of America, 114, 9326–9331.
Zhu T, De Lima C F F, De Smet I. 2021. The heat is on: How crop growth, development and yield respond to high temperature. Journal of Experimental Botany, 72, 7359–7373.
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