[1] Chen B Y, Wang C H, Tian Y K, Chu Q, Hu C. Anatomical characteristics of young stems and mature leaves of dwarf pear. Scientia Horticulturae, 2015, 186: 172-179.
[2] Rivalta L, Dradi M, Rosati C. Thirty years of pear breeding activity at ISF Forli, Italy. Acta Horticulturae, 2002, 596(1): 233-238.
[3] Wang C H, Tian Y K, Buck E J, Gardiner S E, Dai H Y, Jia Y. Genetic mapping of PcDw determining pear dwarf trait. Journal of the American Society for Horticultural Science, 2011, 136(1): 48-53.
[4] 李炜, 田义轲, 王彩虹, 白牡丹, 侯董亮. 通过HRM技术筛查与梨矮生性状决定位点PcDw紧密连锁的SNP标记. 园艺学报, 2015, 42(2): 214-220.
Li W, Tian Y K, Wang C H, Bai M D, Hou D L. Screening of SNP markers tightly linked to PcDw locus determining pear dwarf trait using HRM technology. Acta Horticulturae Sinica, 2015, 42(2): 214-220. (in Chinese)
[5] Davey J W, Blaxter M L. RADSeq: Next-generation population genetics. Brief Funct Genomics, 2011, 9(5): 416-423.
[6] Miller M R, Dunham J P, Amores A, Cresko W A, Johnson E A. Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. Genome Research, 2007, 17(2): 240-248.
[7] Baird N A, Etter P D, Atwood T S, Currey M C, Shiver A L, Lewis Z A, Selker E U, Cresko W A, Johnson E A. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE, 2008, 3(10): e3376.
[8] Peterson B K, Weber J N, Kay E H, Fisher H S, Hoekstra H E. Double digest RADseq: An inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PLoS ONE, 2012, 7(5): e37135.
[9] Elshire R J, Glaubitz J C, Sun Q, Poland J A, Kawamoto K, Buckler E S, Mitchell S E. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE, 2011, 6(5): e19379.
[10] Wang S, Meyer E, Mckay J K, Matz M V. 2b-RAD: A simple and flexible method for genome-wide genotyping. Nature Methods, 2012, 9(8): 808-810.
[11] Dou J, Zhao X, Fu X, Jiao W, Wang N, Zhang L, Hu X, Wang S, Bao Z. Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions. Biology Direct, 2012, 7(1): 1-9.
[12] Chutimanitsakun Y, Nipper R W, Cuesta-Marcos A, Cistué L, Corey A, Filichkina T, Johnson E A, Hayes P M. Construction and application for QTL analysis of a restriction site associated DNA (RAD) linkage map in barley. BMC Genomics, 2011, 12(1): 4.
[13] Pfender W F, Saha M C, Johnson E A, Slabaugh M B. Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theoretical and Applied Genetics, 2011, 122(8): 1467-1480.
[14] Chagné D, Crowhurst R N, Pindo M, Thrimawithana A, Deng C, Ireland H, Fiers M, Dzierzon H, Cestaro A, Fontana P, Bianco L, Lu A, Storey R, Knäbell M, Saeedl M, Montanari1 S, Kim Y K, Nicolini D, Larger S, Stefani E, Allan A C, Bowen J, Harvey I, Johnston J, Malnoy M, Troggio M, Perchepied L, Sawyer G, Wiedowl C, Won K, Viola R, Hellens R P, Brewer L, Bus V G , Schaffer R J, Gardiner S E, Velasco R. The draft genome sequence of european pear (Pyrus communis L. ‘Bartlett’). PLoS ONE, 2014, 9: e92644.
[15] Michelmore R W, Paran I, Kesseli R V. Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proceedings of the National Academy of Sciences of the USA, 1991, 88: 9828-9832.
[16] Li R, Yu C, Li Y, Lam T W, Yiu S M, Kristiansen K, Wang J. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics, 2009, 25 (15): 1966-1967.
[17] Baumgartner I O, Kellerhals M, Costa F, Dondini L, Pagliarani G, Gregori R, Tartarini S, Leumann L, Laurens F, Patocchi A. Development of SNP-based assays for disease resistance and fruit quality traits in apple (Malus × domestica Borkh.) and validation in breeding pilot studies. Tree Genetics & Genomes, 2016, 12(3): 1-21.
[18] Zeballos J L, Abidi W, Giménez R, Monforte A J, Moreno M Á, Gogorcena Y. Mapping QTLs associated with fruit quality traits in peach [Prunus persica (L.) Batsch] using SNP maps. Tree Genetics & Genomes, 2016, 12(3): 1-17.
[19] Wu J, Li L T, Li M, Khan M A, Li X G, Chen H, Yin H, Zhang S L. High-density genetic linkage map construction and identification of fruit-related QTLs in pear using SNP and SSR markers. Journal of Experimental Botany, 2014, 65(20): 5771-5781.
[20] SUN R, CHANG Y, YANG F, WANG Y, LI H, ZHAO Y, CHEN D, WU T, ZHANG X, HAN Z. A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality. BMC Genomics, 2015, 16(1): 747.
[21] 李全林, 王义发, 韩晴, 袁政, 沈雪芳. 糯玉米‘沪五彩花糯1号’品系特异性2b-RAD分子标记的开发及应用. 植物生理学报, 2016, 52(5): 669-677.
Li Q L, Wang Y F, Han Q, Yuan Z, Shen X F. Development and application of molecular markers for event-speci?c identi?cation of waxy corn ‘Huwucaihuanuo 1’ based on 2b-RAD technique. Plant Physiology Journal, 2016, 52(5): 669-677. (in Chinese)
[22] Jiao W, Fu X, Dou J, Li H, Su H, Mao J, Yu Q, Zhang L, Hu X, Huang X, Wang Y, Wang S, Bao Z. High-resolution linkage and quantitative trait locus mapping aided by genome survey sequencing: building up an integrative genomic framework for a bivalve mollusc. DNA Research, 2013, 21(1): 85-101.
[23] Seetharam A S, Stuart G W. Whole genome phylogeny for 21 Drosophila species using predicted 2b-RAD fragments. PeerJ, 2013, 1: e226.
[24] Fletcher R S, Mullen J L, Yoder S, Bauerle W L, Reuning G, Sen S, Meyer E, Juenger T E, McKay J K. Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits. BMC Genomics, 2013, 14(1): 655-655.
[25] Guo Y, Yuan H, Fang D, Song L, Liu Y, Liu Y, Wu L, Yu J, Li Z, Xu X. An improved 2b-RAD approach (2b-RAD) offering genotyping tested by a rice (Oryza sativa L.) F2 population. BMC Genomics, 2014, 15 (1): 956.
[26] Li C, Li Y, Bradbury P J, Wu X, Shi Y, Song Y, Zhang D, Rodgers-Melnick E, Buckler E S, Zhang Z. Construction of high-quality recombination maps with low-coverage genomic sequencing for joint linkage analysis in maize. BMC Biology, 2015, 13: 78.
[27] Pecoraro C, Babbucci M, Villamor A, Franch R, Papetti C, Leroy B, Ortega-Garcia S, Muir J, Rooker J, Arocha F, Murua H, Zudaire I, Chassot E, Bodin N, Tinti F, Bargelloni L, Cariani A. Methodological assessment of 2b-RAD genotyping technique for population structure inferences in yellowfin tuna (Thunnus albacares). Marine Genomics, 2015, 25: 43-48.
[28] Pauletto M, Carraro L, Babbucci M, Lucchini R, Bargelloni L, Cardazzo B. Extending RAD tag analysis to microbial ecology: A comparison between multilocus sequence typing and 2b-RAD to investigate listeriamonocytogenes genetic structure. Molecular Ecology Resources, 2016, 16(3): 823-835.
[29] Lu Z, Niu L, Chagné D, Cui G, Pan L, Foster T, Zhang R P, Zeng W F, Wang Z Q. Fine mapping of the temperature-sensitive semi-dwarf (Tssd) locus regulating the internode length in peach (Prunus persica). Molecular Breeding, 2016, 36(2): 1-11.
[30] Wang C H, Li W, Tian Y K, Hou D L, Bai M D. Development of molecular markers for genetic and physical mapping of the PcDw locus in pear (Pyrus communis L.). Journal of Horticultural Science & Biotechnology, 2016, 91(3): 299-307.
[31] 赵俊生, 杨晓燕, 曾祥有, 钟声, 方静, 罗剑斌, 曾运友, 向旭. 利用SNP 分子标记分析化橘红种质资源. 分子植物育种, 2016, 14(5): 1203-1211.
Zhao J S, Yang X Y, Zeng X Y, Zhong S, Fang J, Luo J B, Zeng Y Y, Xiang X. Analysis on germplasm resources of Exocarpium citri grandis using SNP molecular markers. Molecular Plant Breeding, 2016, 14(5): 1203-1211. |