中国农业科学 ›› 2022, Vol. 55 ›› Issue (21): 4196-4210.doi: 10.3864/j.issn.0578-1752.2022.21.008
裴悦宏(),李凤巍,刘维娜,温玉霞,朱鑫,田绍锐,樊光进,马小舟,孙现超()
收稿日期:
2022-06-28
接受日期:
2022-07-19
出版日期:
2022-11-01
发布日期:
2022-11-09
通讯作者:
孙现超
作者简介:
裴悦宏,E-mail:基金资助:
PEI YueHong(),LI FengWei,LIU WeiNa,WEN YuXia,ZHU Xin,TIAN ShaoRui,FAN GuangJin,MA XiaoZhou,SUN XianChao()
Received:
2022-06-28
Accepted:
2022-07-19
Online:
2022-11-01
Published:
2022-11-09
Contact:
XianChao SUN
摘要:
【目的】明确抗病毒化合物氯吲哚酰肼(chloroinconazide,CHI)诱导的本氏烟(Nicotiana benthamiana)半胱氨酸蛋白酶(cysteine proteinase,CP)在烟草花叶病毒(tobacco mosaic virus,TMV)侵染过程中的作用及其基因家族特征,为理解茄科作物抗病毒分子机制及化学调控提供理论依据。【方法】利用全基因组策略,从茄科作物基因组数据库Sol Genomics Network中检索获得本氏烟NbCP的全家族基因序列,利用生物信息学分析NbCP基因家族的进化关系、Motif基序及启动子顺式作用元件。根据生物信息分析结果,利用实时荧光定量PCR技术分析TMV侵染后NbCP基因的表达,以此筛选出潜在抗病蛋白。使用烟草脆裂病毒(tobacco rattle virus,TRV)介导的基因沉默技术和马铃薯X病毒(potato virus X,PVX)介导的基因过表达技术验证该关键蛋白对TMV-GFP侵染的影响,结合实时荧光定量PCR手段探索该关键蛋白的抗病毒机制。【结果】NbCP家族共有24个成员,根据其染色体定位命名为NbCP1—NbCP24。进化关系分析表明NbCP分成5个亚家族,其中Group V含有7个NbCP,而Group I仅含2个NbCP;Motif分析表明不同分支NbCP具有相似的motif分布;启动子顺式作用元件分析表明NbCP家族基因受光调控,并且多个NbCP家族基因启动子含有茉莉酸甲酯、水杨酸甲酯、脱落酸、赤霉素和生长素等激素响应元件。结合生物信息学分析,从上述各个亚家族中分别筛选1个关键潜在抗病相关NbCP基因(NbCP8、NbCP12、NbCP13、NbCP18、NbCP22),并利用实时荧光定量PCR技术分析上述基因在TMV侵染第5天的表达,发现NbCP8表达差异性最大,上升了2.6倍,NbCP8在叶中的表达量最高,其次是茎和根,在花中的表达量最低。TRV介导的NbCP8沉默能显著增加TMV-GFP的侵染,而PVX介导的NbCP8过表达能显著抑制TMV-GFP侵染,表明NbCP8作为植物正调控因子抑制病毒侵染。沉默NbCP8显著抑制了水杨酸信号途径相关基因PR1以及茉莉酸信号途径相关基因MYC2的表达,但对NPR1、COI1以及脱落酸信号途径相关基因ABA1和NCED1的表达无显著影响;而过表达NbCP8则显著提高了PR1以及ABA1的表达,但对NPR1、MYC2、COI1和NCED1的表达无显著影响。【结论】本氏烟NbCP参与了植物胁迫防御,其中NbCP8在抗TMV防御中起显著作用,其分子机制是通过诱导水杨酸信号途径参与抗病防御,研究结果可为茄科作物抗病毒的分子机制提供证据。
裴悦宏,李凤巍,刘维娜,温玉霞,朱鑫,田绍锐,樊光进,马小舟,孙现超. 本氏烟半胱氨酸蛋白酶基因家族特征及其在TMV侵染中的功能[J]. 中国农业科学, 2022, 55(21): 4196-4210.
PEI YueHong,LI FengWei,LIU WeiNa,WEN YuXia,ZHU Xin,TIAN ShaoRui,FAN GuangJin,MA XiaoZhou,SUN XianChao. Characteristics of Cysteine Proteinase Gene Family in Nicotiana benthamiana and Its Function During TMV Infection[J]. Scientia Agricultura Sinica, 2022, 55(21): 4196-4210.
表1
本研究所用引物序列"
引物名称 Primers name | 引物序列F Primer sequence F (5′-3′) | 引物序列R Primer sequence R (5′-3′) | |
---|---|---|---|
PCR | NbCP8 | ATGTCTCGTTTCTCACTTCTATTGGC | TCCTACCCTGTCGTTGCCTGA |
qRT-PCR | CP8 | TCGCTTTGCTCACAGGTATG | TGGTGGCTGAACAGTTTTGA |
CP12 | GAAAGCTGCACTGAACCCTC | GTGCTACAGTTAGGCCAAGC | |
CP22 | CGGCAGTGAGAGAGCATTTC | CCACCCTTCCTCATAAGCCA | |
CP18 | CCCTTATCGCGGTGTTGAAG | GATGCTTCAATGGCTACGCA | |
CP13 | TAAGAACCAAGGGCAATGCG | GAGACCTCCTTGACAACCCA | |
MYC2 | CGGTTCTTCTTCCGTCTTCTT | ACGCTGTTGAAGGGTTTCT | |
TMV MP | TTAGGTTCCCTGACGGTGAC | ACCGTTGCGTCGTCTACTCT | |
ABA1 | GCCGTTGTTTGTTCATCTC | ACTGTATCACCTTGCCTCC | |
NCED1 | ACCCGACTCGATTTTCAATG | AACTTTTGGCCATGGTTCTG | |
COI1 | CAGCAGCCCATTGTTTCTTAC | TACTGGCCAAGTACTTCCAATC | |
PR1 | CGTGAAGATGTGGGTCAATG | CCATACGGACGTTGTCCTCT | |
NPR1 | TGTTGCTGCCATGAGAAAAG | TAACCGATCCTTTGGAGCAG | |
Actin | CGGTGCCCACTTTCCGATCT | TCCTCACCGTCAGCCATTTT | |
TRV | TRV:NbCP8 | CGCGGATCCGGCTGCAATGGTGGGCT | CCGCTCGAGTACATCCATGGGAGTGTTGC |
PVX | PVX:NbCP8 | ACGCGTCGACATGTCTCGTTTCTCACTTCTATTGGC | CCATCGATCATGTCTCGTTTCTCACTTCTATTGGC |
表2
NbCP基因家族鉴定与特征分析"
名称 Name | 基因定位 Gene locus ID | 蛋白质编码区长度 CDS (bp) | 分子量 MW (Da) | 等电点 pI | 分子式 Formula |
---|---|---|---|---|---|
NbCP1 | Niben101Scf00712g02010.1 | 1068 | 39921.29 | 5.74 | C1790H2756N468O538S15 |
NbCP2 | Niben101Scf00973g01002.1 | 1113 | 40808.02 | 5.95 | C1801H2786N498O551S18 |
NbCP3 | Niben101Scf01369g00024.1 | 1068 | 39907.19 | 5.64 | C1782H2746N470O540S16 |
NbCP4 | Niben101Scf01631g00002.1 | 999 | 36623.07 | 5.29 | C1614H2486N428O512S17 |
NbCP5 | Niben101Scf02159g01012.1 | 1086 | 40558.46 | 5.78 | C1800H2755N489O554S14 |
NbCP6 | Niben101Scf02336g00010.1 | 1311 | 48758.34 | 5.71 | C2175H3349N573O656S23 |
NbCP7 | Niben101Scf02336g00012.1 | 1482 | 55407.91 | 5.82 | C2460H3771N661O736S32 |
NbCP8 | Niben101Scf02763g05012.1 | 1059 | 38333.52 | 7.00 | C1712H2658N464O511S13 |
NbCP9 | Niben101Scf02832g01014.1 | 1074 | 38845.02 | 5.09 | C1705H2679N473O527S19 |
NbCP10 | Niben101Scf02853g06021.1 | 1086 | 40508.59 | 6.20 | C1798H2765N491O548S15 |
NbCP11 | Niben101Scf02976g00007.1 | 1086 | 39876.46 | 6.00 | C1781H2733N481O520S21 |
NbCP12 | Niben101Scf03867g02046.1 | 1092 | 40222.77 | 5.67 | C1801H2739N479O526S22 |
NbCP13 | Niben101Scf04209g00004.1 | 1023 | 37952.64 | 6.67 | C1674H2566N460O515S18 |
NbCP14 | Niben101Scf04653g01012.1 | 1059 | 39469.28 | 6.23 | C1747H2691N483O537S13 |
NbCP15 | Niben101Scf04934g02006.1 | 1035 | 38571.66 | 8.89 | C1711H2628N468O513S19 |
NbCP16 | Niben101Scf05035g01005.1 | 2052 | 74678.53 | 5.18 | C3261H4973N891O1032S47 |
NbCP17 | Niben101Scf05047g04012.1 | 987 | 36843.67 | 5.72 | C1649H2522N434O496S15 |
NbCP18 | Niben101Scf05135g02002.1 | 1125 | 42280.54 | 6.73 | C1861H2883N523O572S17 |
NbCP19 | Niben101Scf05469g01014.1 | 336 | 11947.10 | 4.37 | C505H778N140O178S9 |
NbCP20 | Niben101Scf05469g01024.1 | 1623 | 59602.30 | 4.45 | C2638H3964N682O840S29 |
NbCP21 | Niben101Scf08921g02020.1 | 1584 | 59286.05 | 8.87 | C2632H4069N729O789S23 |
NbCP22 | Niben101Scf10490g00007.1 | 990 | 36122.34 | 4.81 | C1597H2446N420O509S14 |
NbCP23 | Niben101Scf11030g00003.1 | 720 | 26115.98 | 7.95 | C1146H1786N310O344S22 |
NbCP24 | Niben101Scf15022g00015.1 | 1113 | 40804.10 | 6.01 | C1797H2790N502O548S19 |
图5
NbCP8的蛋白三维结构及组织表达 A:NbCP8的蛋白三维结构,模型参数为X:54.411、Y:64.752、Z:55.080 Three-dimensional protein structure of NbCP8, image colored by rainbow N→C terminus, model dimensions (?): X: 54.411, Y: 64.752, Z: 55.080;B:NbCP8在本氏烟中的组织表达,统计分析采用LSD检验,柱上不同小写字母表示差异显著(P<0.05)。每个处理进行3次生物学重复,每次生物学重复10株植株,数值代表3次生物学重复的平均值±标准误 Tissue expression of NbCP8, the statistical analyses were performed using LSD test, different lowercases on the bars indicated significant differences (P<0.05). The experiments were repeated three times with ten plants each time. Values represent means±SE from three biological replications"
图6
沉默NbCP8促进TMV-GFP侵染 A:TRV:NbCP8的沉默效率检测Silencing efficiency detection in TRV:NbCP8;B:TRV:NbCP8和 TRV:00 接种 TMV-GFP 后的症状图 Symptoms after inoculation with TMV-GFP in TRV:NbCP8 and TRV:00;C:TRV:NbCP8和TRV:00中TMV-GFP含量检测Detection of TMV-GFP content in TRV:NbCP8 and TRV:00;D:Western blot检测TRV:NbCP8和TRV:00接种TMV-GFP后第5天TMV-GFP蛋白含量Western blot detection of TMV-GFP protein content in TRV:NbCP8 and TRV:00。统计分析采用 Student’s t 检验(***P<0.001),每个处理进行 3 次生物学重复,每次生物学重复10株植株,数值代表3次生物学重复的平均值±标准误The statistical analyses were performed using Student’s t-test (***P<0.001). The experiments were repeated three times with ten plants each time. Values represent means±SE from three biological replications"
图7
过表达NbCP8抑制TMV-GFP侵染 A:PVX:NbCP8 和PVX:00 中NbCP8的表达检测Detection of NbCP8 expression in PVX:NbCP8 and PVX:00;B:PVX:NbCP8和 PVX:00 接种 TMV-GFP 后的症状图 Symptoms after inoculation with TMV-GFP in PVX:NbCP8 and PVX:00;C:PVX:NbCP8和PVX:00 中TMV-GFP含量检测Detection of TMV-GFP content in PVX:NbCP8 and PVX:00;D:Western blot检测PVX:NbCP8和PVX:00接种TMV-GFP后第5天TMV-GFP蛋白含量Western blot detection of TMV-GFP protein content in PVX:NbCP8 and PVX:00。统计分析采用 Student’s t 检验(**0.001<P<0.01),每个处理进行 3 次生物学重复,每次生物学重复10株植株,数值代表3次生物学重复的平均值±标准误The statistical analyses were performed using Student’s t-test (**0.001<P<0.01). The experiments were repeated three times with ten plants each time. Values represent means±SE from three biological replications"
图8
NbCP8对植物激素信号途径相关基因表达的影响 A:TRV:NbCP8中水杨酸、茉莉酸和脱落酸相关基因的表达 Expression of SA-, JA- and ABA-related genes in TRV:NbCP8 plant;B:PVX:NbCP8中水杨酸、茉莉酸和脱落酸相关基因的表达 Expression of SA-, JA- and ABA-related genes in PVX:NbCP8 plant。统计分析采用 Student’s t 检验(*0.01<P<0.05,**0.001<P<0.01,***P<0.001),每个处理进行 3 次生物学重复,每次生物学重复10株植株,数值代表3次生物学重复的平均值±标准误The statistical analyses were performed using Student’s t-test (*0.01<P<0.05, **0.001<P<0.01, ***P<0.001). The experiments were repeated three times with ten plants each time. Values represent means±SE from three biological replications"
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