园艺作物品质提升与逆境适应性Horticulture——Quality Improvement & Stress adaptation
Passion fruit (Passiflora edulis Sims) is a vine of the Passiflora genus in the Passifloraceae family. The extracted components include flavonoids and terpenoids, which have good anti-anxiety and anti-inflammatory effects in humans. In this study, we analyzed the transcriptomes of four tissues of the ‘Zixiang’ cultivar using RNA-Seq, which provided a dataset for functional gene mining. The de novo assembly of these reads generated 96 883 unigenes, among which 61 022 unigenes were annotated (62.99% yield). In addition to its edible value, another important application of passion fruit is its medicinal value. The flavonoids and terpenoids are mainly derivatives of luteolin, apigenin, cycloartane triterpenoid saponins and other active substances in leaf extracts. A series of candidate unigenes in the transcriptome data that are potentially involved in the flavonoid and terpenoid synthesis pathways were screened using homology-based BLAST and phylogenetic analysis. The results showed that the biosynthesis of triterpenoids in passion fruit comes from the branches of the mevalonate (MVA) and 2-C-methyl-D-erythritol 4-phosphate/1-deoxy-D-xylulose 5-phosphate (MEP/DOXP) pathways, which is different from the MVA pathway that is used in other fruit trees. Most of the candidate genes were found to be highly expressed in the leaves and/or flowers. Quantitative real-time PCR (qRT-PCR) verification was carried out and confirmed the reliability of the RNA-Seq data. Further amplification and functional analysis of these putative unigenes will provide additional insight into the biosynthesis of flavonoids and terpenoids in passion fruit.
Cassava MeRS40 is required for the regulation of plant salt tolerance
Soil salinity affects the expression of serine/arginine-rich (SR) genes and isoforms by alternative splicing, which in turn regulates the adaptation of plants to stress. We previously identified the cassava spliceosomal component 35 like (SCL) and SR subfamilies, belonging to the SR protein family, which are extensively involved in responses to abiotic stresses. However, the post-transcriptional regulatory mechanism of cassava arginine/serine-rich (RS) subfamily in response to salt stress remains to be explored. In the current study, we identified 37 genes of the RS subfamily from 11 plant species and systematically investigated the transcript levels of the RS40 and RS31 genes under diverse abiotic stress conditions. Subsequently, an analysis of the conserved protein domains revealed that plant RS subfamily genes were likely to preserve their conserved molecular functions and played critical functional roles in responses to abiotic stresses. Importantly, we found that overexpression of MeRS40 in Arabidopsis enhanced salt tolerance by maintaining reactive oxygen species homeostasis and up-regulating the salt-responsive genes. However, overexpression of MeRS40 gene in cassava reduced salt tolerance due to the depression of its endogenous gene expression by negative autoregulation of its own pre-mRNA. Moreover, the MeRS40 protein interacted with MeU1-70Ks (MeU1-70Ka and MeU1-70Kb) in vivo and in vitro, respectively. Therefore, our findings highlight the critical role of cassava SR proteins in responses to salt stress in plants.
Rhododendron is a well-known genus consisting of commercially valuable ornamental woody plant species. Heat stress is a major environmental factor that affects rhododendron growth. Melatonin was recently reported to alleviate the effects of abiotic stress on plants. However, the role of melatonin in rhododendron plants is unknown. In this study, the effect of melatonin on rhododendron plants exposed to heat stress and the potential underlying mechanism were investigated. Analyses of morphological characteristics and chlorophyll a fluorescence indicated 200 µmol L–1 was the optimal melatonin concentration for protecting rhododendron plants from heat stress. To elucidate how melatonin limits the adverse effects of high temperatures, melatonin contents, photosynthetic indices, Rubisco activity, and adenosine triphosphate (ATP) contents were analyzed at 25, 35, and 40°C, respectively. Compared with the control, exogenous application of melatonin improved the melatonin contents, electron transport rate, photosystem II and I activities, Rubisco activity, and ATP contents under heat stress. The transcriptome analysis revealed many of the heat-induced differentially expressed genes were associated with the photosynthetic pathway; the expression of most of these genes was down-regulated by heat stress more in the melatonin-free plants than in the melatonin-treated plants. We identified RhPGR5A, RhATPB, RhLHCB3, and RhRbsA as key genes. Thus, we speculate that melatonin promotes photosynthetic electron transport, improves Calvin cycle enzyme activities, and increases ATP production. These changes lead to increased photosynthetic efficiency and CO2 assimilation under heat stress conditions via the regulated expression of specific genes, including RhRbsA. Therefore, the application of exogenous melatonin may increase the tolerance of rhododendron to heat stress.
MdWRKY40is directly promotes anthocyanin accumulation and blocks MdMYB15L, the repressor of MdCBF2, which improves cold tolerance in apple
Cold stress is an important factor that limits apple production. In this study, we examined the tissue-cultured plantlets of apple rootstocks ‘M9T337’ and ‘60-160’, which are resistant and sensitive to cold stress, respectively. The enriched pathways of differentially expressed genes (DEGs) and physiological changes in ‘M9T337’ and ‘60-160’ plantlets were clearly different after cold stress (1°C) treatment for 48 h, suggesting that they have differential responses to cold stress. The differential expression of WRKY transcription factors in the two plantlets showed that MdWRKY40is and MdWRKY48 are potential regulators of cold tolerance. When we overexpressed MdWRKY40is and MdWRKY48 in apple calli, the overexpression of MdWRKY48 had no significant effect on the callus, while MdWRKY40is overexpression promoted anthocyanin accumulation, increased callus cold tolerance, and promoted the expression of anthocyanin structural gene MdDFR and cold-signaling core gene MdCBF2. Yeast one-hybrid screening and electrophoretic mobility shift assays showed that MdWRKY40is could only bind to the MdDFR promoter. Yeast two-hybrid screening and bimolecular fluorescence complementation showed that MdWRKY40is interacts with the CBF2 inhibitor MdMYB15L through the leucine zipper (LZ). When the LZ of MdWRMY40is was knocked out, MdWRKY40is overexpression in the callus did not affect MdCBF2 expression or callus cold tolerance, indicating that MdWRKY40is acts in the cold signaling pathway by interacting with MdMYB15L. In summary, MdWRKY40is can directly bind to the MdDFR promoter in order to promote anthocyanin accumulation, and it can also interact with MdMYB15L to interfere with its inhibitory effect on MdCBF2, indirectly promoting MdCBF2 expression, and thereby improving cold tolerance. These results provide a new perspective for the cold-resistance mechanism of apple rootstocks and a molecular basis for the screening of cold-resistant rootstocks.
Chinese cabbage is an important leafy vegetable crop with high water demand and susceptibility to drought stress. To explore the molecular mechanisms underlying the response to drought, we performed a transcriptome analysis of drought-tolerant and -sensitive Chinese cabbage genotypes under drought stress, and uncovered core drought-responsive genes and key signaling pathways. A co-expression network was constructed by a weighted gene co-expression network analysis (WGCNA) and candidate hub genes involved in drought tolerance were identified. Furthermore, abscisic acid (ABA) biosynthesis and signaling pathways and their drought responses in Chinese cabbage leaves were systemically explored. We also found that drought treatment increased the antioxidant enzyme activities and glucosinolate contents significantly. These results substantially enhance our understanding of the molecular mechanisms underlying drought responses in Chinese cabbage.
Carotenoids are involved in the formation of plant leaf color as well as photosystem photoprotection. This study showed that blue light significantly induced up-regulation of the total carotenoid content in the inner leaves of orange-head Chinese cabbage (OHCC). Furthermore, the transcriptomic analysis revealed that blue light treatment induced up-regulation of genes in photosynthesis (BrHY5-2, BrCOP1 and BrDET1) and the methylerythritol 4-phosphate pathways (BrGGPS, BrDXS and BrHDR) upstream of the carotenoid metabolic pathway. Carotenoid metabolomic analysis revealed that the accumulation of several orange and red carotenoids (lycopene, zeaxanthin, β-carotene, lutein, and β-cryptoxanthin) after blue light treatment contributed to the deepening of the leaf coloration, suggesting that short-term blue light treatment could be used to boost nutritional quality. The light signal gene BrHY5-2 participated in the blue light-induced transcriptional regulation of carotenoid biosynthesis in OHCC. Overexpression of BrHY5-2 in Arabidopsis significantly increased the total carotenoid content and the sensitivity to blue light. The above findings revealed new insights about blue-light-induced carotenoid synthesis and accumulation in OHCC lines. They suggested a new engineering approach to increase the nutritional value of vegetables.
High-throughput screening system of citrus bacterial canker-associated transcription factors and its application to the regulation of citrus canker resistance
One of the main diseases that adversely impacts the global citrus industry is citrus bacterial canker (CBC), caused by the bacteria Xanthomonas citri subsp. citri (Xcc). Response to CBC is a complex process, with both protein-DNA as well as protein–protein interactions for the regulatory network. To detect such interactions in CBC resistant regulation, a citrus high-throughput screening system with 203 CBC-inducible transcription factors (TFs), were developed. Screening the upstream regulators of target by yeast-one hybrid (Y1H) methods was also performed. A regulatory module of CBC resistance was identified based on this system. One TF (CsDOF5.8) was explored due to its interactions with the 1-kb promoter fragment of CsPrx25, a resistant gene of CBC involved in reactive oxygen species (ROS) homeostasis regulation. Electrophoretic mobility shift assay (EMSA), dual-LUC assays, as well as transient overexpression of CsDOF5.8, further validated the interactions and transcriptional regulation. The CsDOF5.8–CsPrx25 promoter interaction revealed a complex pathway that governs the regulation of CBC resistance via H2O2 homeostasis. The high-throughput Y1H/Y2H screening system could be an efficient tool for studying regulatory pathways or network of CBC resistance regulation. In addition, it could highlight the potential of these candidate genes as targets for efforts to breed CBC-resistant citrus varieties.
For a long time, seasonal drought occurs frequently in Southwest China, and the management of water and fertilizer in kiwifruit orchards has no quantitative standards, which seriously affects the yield and quality of kiwifruit. Therefore, the effects of water and fertilizer deficit regulation with drip irrigation (WFDRDI) on the quality of kiwifruit at different growth stages were explored to achieve water and fertilizer saving, and green and efficient production of kiwifruit. We select ‘Jin Yan’ kiwifruit and set two water deficit levels (WD20% and WD40%) and three fertilizer deficit levels (FD15%, FD30% and FD45%) at bud burst to leafing stage (stage I), flowering to fruit set stage (stage II), fruit expansion stage (stage III) and fruit maturation stage (stage IV), respectively, with a full irrigation and fertilization as the control treatment (CK) in 2017 and 2018. Results showed that the WFDRDI at stage II and III had significant effect on fruit physical quality of kiwifruit, specifically, the III-WD40%FD30% and III-WD20%FD45% treatments significantly increased fruit firmness by 13.62 and 15.59% (P<0.05), respectively; the II-WD40%FD15% and III-WD40%FD15% treatments significantly increased dry matter by 8.19 and 6.47% (P<0.05), respectively; the III-WD20%FD15% treatment significantly increased single fruit weight and fruit volume by 9.33 and 12.65% (P<0.05), respectively; the II-WD20%FD15% treatment significantly increased fruit water content by 1.99% (P<0.05). The WFDRDI had an obvious effect on fruit chemical quality of kiwifruit. The III-WD20%FD45%, IV-WD40%FD15% and IV-WD20%FD30% treatments significantly increased vitamin C (Vc) content by 69.96, 36.96 and 34.31% (P<0.05), respectively; the III-WD40%FD15% and IV-WD40%FD15% treatments significantly increased total soluble solid (TSS) content by 3.79 and 17.05% (P<0.05), respectively, and significantly increased soluble sugar content by 28.61 and 34.79% (P<0.05), respectively; the contents of fructose, glucose and sucrose also had a significantly increasing trend, which was increased significantly by 5.58–19.63%, 40.55–60.36% and 54.03–54.92% in the III-WD40%FD15% and IV-WD40%FD15% treatments (P<0.05), respectively; sugar–acid ratio was increased significantly in the IV-WD40%FD15% treatment by 64.65% (P<0.05). The degree and duration of water and fertilizer deficit had a comprehensive effect on fruit quality of kiwifruit. The WFDRDI at stage II and III contribute to improving fruit physical quality, and the threshold of water and fertilizer deficit were 20 and 15%, respectively; stage III and IV are the critical periods for improving fruit chemical quality by water and fertilizer coupling effect, and the threshold of water and fertilizer deficit were 40 and 15%, respectively. Therefore, aiming at precise water and fertilizer saving, the I-WD20%FD30%, II-WD40%FD15%, III-WD40%FD15% and IV-WD40%FD15% treatments under WFDRDI during the whole growth period of kiwifruit were the best mode to improve quality and production of kiwifruit.