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A meta-analysis to explore the impact of straw decomposing microorganism inoculant-amended straw on soil organic carbon stocks
Chao Ma, Zhifeng He, Jiang Xiang, Kexin Ding, Zhen Zhang, Chenglong Ye, Jianfei Wang, Yusef Kianpoor Kalkhajeh
2025, 24 (4): 1577-1587.   DOI: 10.1016/j.jia.2025.02.002
Abstract20)      PDF in ScienceDirect      
Although the application of straw decomposing microorganism inoculants (SDMI) can accelerate straw decomposition, the underlying mechanisms affecting soil organic carbon (SOC) under different scenarios remain unclear.  We conducted a meta-analysis using 226 observations from 86 studies on SOC changes under straw return with or without SDMI applications.  Overall, our results indicated that straw with SDMI application increased the SOC stock by 1.51% at an initial carbon-to-nitrogen ratio (ICNR)>25 (P<0.05), while the effect of ICNR≤25 was insignificant.  In particular, at ICNR>25, application of SDMI-treated straw increased SOC stocks in northern temperate continental areas (NTC) higher than in subtropical monsoon regions (STM).  Furthermore, the straw with SDMI application increased higher SOC stocks in soils with pH>7.5 than those with pH≤7.5.  In terms of agricultural management practices, SOC stocks were significantly higher in straw buried (SB), the experimental duration of straw return (EDSR)≥1 year, the straw return amount (SRA)>6,000 kg ha–1, and the SDMI application rate (SDMIR)>30 kg ha–1 conditions.  The effect of straw with SDMI on SOC stocks under straw burying (SB) was significantly higher than that under straw mulching (SM) at ICNR≤25.  At ICNR>25, EDSR, SDMIR, and the mean annual precipitation (MAP) were the main drivers of the effect of SDMI addition to straw on SOC stocks.  Straw with SDMI induced SOC stock increases which increased with EDSR and decreased with increasing MAP.  These findings provide a scientific basis for decision-makers and stakeholders to improve soil C management via the application of SDMI-amended straw at both regional and large scales.  


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Low-density lipoprotein receptor-related protein 2 (LRP2) is required for lipid export in the midgut of the migratory locust, Locusta migratoria

Yiyan Zhao, Weimin Liu, Xiaoming Zhao, Zhitao Yu, Hongfang Guo, Yang Yang, Hans Merzendorfer, Kun Yan Zhu, Jianzhen Zhang
2024, 23 (5): 1618-1633.   DOI: 10.1016/j.jia.2023.07.027
Abstract130)      PDF in ScienceDirect      

Low-density lipoprotein receptor-related protein 2 (LRP2) is a multifunctional endocytic receptor expressed in epithelial cells.  In mammals, it acts as an endocytic receptor that mediates the cellular uptake of cholesterol-containing apolipoproteins to maintain lipid homeostasis.  However, little is known about the role of LRP2 in lipid homeostasis in insects.  In the present study, we investigated the function of LRP2 in the migratory locust Locusta migratoria (LmLRP2).  The mRNA of LmLRP2 is widely distributed in various tissues, including integument, wing pads, foregut, midgut, hindgut, Malpighian tubules and fat body, and the amounts of LmLRP2 transcripts decreased gradually in the early stages and then increased in the late stages before ecdysis during the nymphal developmental stage.  Fluorescence immunohistochemistry revealed that the LmLRP2 protein is mainly located in cellular membranes of the midgut and hindgut.  Using RNAi to silence LmLRP2 caused molting defects in nymphs (more than 60%), and the neutral lipid was found to accumulate in the midgut and surface of the integument, but not in the fat body, of dsLmLRP2-treated nymphs.  The results of a lipidomics analysis showed that the main components of lipids (diglyceride and triglyceride) were significantly increased in the midgut, but decreased in the fat body and hemolymph.  Furthermore, the content of total triglyceride was significantly increased in the midgut, but markedly decreased in the fat body and hemolymph in dsLmLRP2-injected nymphs.  Our results indicate that LmLRP2 is located in the cellular membranes of midgut cells, and is required for lipid export from the midgut to the hemolymph and fat body in locusts.

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Development and formation of wing cuticle based on transcriptomic analysis in Locusta migratoria during metamorphosis

Jing Zhang, Zhaochen Wu, Shuo Li, He Huang, Suning Liu, Weimin Liu, Xiaoming Zhao, Jianzhen Zhang
2024, 23 (4): 1285-1299.   DOI: 10.1016/j.jia.2023.10.022
Abstract113)      PDF in ScienceDirect      

Wings are an important flight organ of insects.  Wing development is a complex process controlled by a series of genes.  The flightless wing pad transforms into a mature wing with the function of migratory flight during the nymph-to-adult metamorphosis.  However, the mechanism of wing morphogenesis in locusts is still unclear.  This study analyzed the microstructures of the locust wing pads at pre-eclosion and the wings after eclosion and performed the comparative transcriptome analysis.  RNA-seq identified 25,334 unigenes  and 3,430 differentially expressed genes (DEGs) (1,907 up-regulated and 1,523 down-regulated).  The DEGs mainly included cuticle development (LmACPs), chitin metabolism (LmIdgf4), lipid metabolism-related genes, cell adhesion (Integrin), zinc finger transcription factors (LmSalm, LmZF593 and LmZF521), and others.  Functional analysis based on RNA interference and hematoxylin and eosin (H&E) staining showed that the three genes encoded zinc finger transcription factors are essential for forming wing cuticle and maintaining morphology in Locusta migratoria.  Finally, the study found that the LmSalm regulates the expression of LmACPs in the wing pads at pre-eclosion, and LmZF593 and LmZF521 regulate the expression of LmIntegrin/LmIdgf4/LmHMT420 in the wings after eclosion.  This study revealed that the molecular regulatory axis controls wing morphology in nymphal and adult stages of locusts, offering a theoretical basis for the study of wing development mechanisms in hemimetabolous insects.

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Transcriptomic and metabolomic analysis of changes in grain weight potential induced by water stress in wheat
Yanmei Gao, Maoya Jing, Meng Zhang, Zhen Zhang, Yuqing Liu, Zhimin Wang, Yinghua Zhang
2024, 23 (11): 3706-3722.   DOI: 10.1016/j.jia.2023.12.015
Abstract145)      PDF in ScienceDirect      
The sink strength of developing ovaries in wheat determines the grain weight potential.  The period from booting to the grain setting stage is critical for ovary growth and development and potential sink capacity determination.  However, the underlying regulatory mechanism during this period by which the wheat plant balances and coordinates the floret number and ovary/grain weight under water stress has not been clarified.  Therefore, we designed two irrigation treatments of W0 (no seasonal irrigation) and W1 (additional 75 mm of irrigation at the jointing stage) and analyzed the responses of the ovary/grain weight to water stress at the phenotypic, metabolomic, and transcriptomic levels.  The results showed that the W0 irrigation treatment reduced the soil water content, plant height, and green area of the flag leaf, thus reducing grain number, especially for the inferior grains.  However, it improved the grain weight of the superior and inferior grains as well as average grain weight at maturity, while the average ovary/grain weight and volume during –3 to 10 days after anthesis (DAA) also increased.  Transcriptomic analysis indicated that the genes involved in both sucrose metabolism and phytohormone signal transduction were prominently accelerated by the W0 treatment, accompanied by greater enzymatic activities of soluble acid invertase (SAI) and sucrose synthase (Sus) and elevated abscisic acid (ABA) and indole-3-acetic acid (IAA) levels.  Thus, the sucrose content decreased, while the glucose and fructose contents increased.  In addition, several TaTPP genes (especially TaTPP-6) were down-regulated and the IAA biosynthesis genes TaTAR1 and TaTAR2 were up-regulated under the W0 treatment before anthesis, which further increased the IAA level.  Collectively, water stress reduced the growth of vegetative organs and eliminated most of the inferior grains, but increased the ABA and IAA levels of the surviving ovaries/grains, promoting the enzymatic activity of Sus and degrading sucrose into glucose and fructose.  As a result, the strong sucrose utilization ability, the enhanced enzymatic activity of SAI and the ABA- and IAA-mediated signaling jointly increased the weight and volume of the surviving ovaries/grains, and ultimately achieved the trade-off between ovary/grain weight and number in wheat under water stress.


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Emergence of highly pathogenic avian influenza A (H5N8) clade 2.3.4.4b viruses in grebes in Inner Mongolia and Ningxia, China, in 2021

Qiuzi Xu, Xinru Lü, Yi Li, Hua Luo, Zhen Zhang, Xiang Li, Rongxiu Qin, Qing An, Fengyi Qu, Zhenliang Zhao, Chengbo Zhang, Weidong Wang, Yuecheng Li, Yajun Wang, Xiangwei Zeng, Zhijun Hou, Jingqiang Ren, Yulong Wang, Yanbing Li, Hongliang Chai
2024, 23 (1): 348-353.   DOI: 10.1016/j.jia.2023.09.026
Abstract143)      PDF in ScienceDirect      
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Genome- and transcriptome-wide association studies reveal the genetic basis of seed palmitic acid content in Brassica napus
Haijiang Liu, Yongheng Yuan, YunShan Tang, RuoShui Li, Kaijie Ye, Mengzhen Zhang, Kun Lu, Nengwen Yin, Huiyan Zhao, Yuanyuan Liu, Taocui Huang, Rui Wang, Lei Shi, Hai Du, Cunmin Qu
DOI: 10.1016/j.jia.2024.11.015 Online: 12 November 2024
Abstract16)      PDF in ScienceDirect      

Rapeseed (Brassica napus L.) is one of the most important oilseed crops worldwide.  Development of rapeseed varieties with high-quality oil is a long-term breeding goal.  Reducing the contents of palmitic acid, the main saturated fatty acid in rapeseed oil, could greatly improve oil quality.  Here, we performed genome-wide association study (GWAS) and transcriptome-wide association study (TWAS) of seed palmitic acid content (SPAC) using 393 diverse B. napus accessions.  Four genes (BnaA08.DAP, BnaA08.PAA1, BnaA08DUF106, and BnaC03.DAP) were identified by both GWAS and TWAS.  The transcripts per million (TPM) values of these candidate genes at 20 and 40 days after flowering (DAF) were significantly correlated with SPAC in this association panel.  Based on genetic variation in the candidate genes, we identified four low-SPAC haplotypes by combining candidate gene association analysis and haplotype analysis.  Brassica napus accessions carrying low-SPAC haplotypes had lower SPAC than those carrying high-SPAC haplotypes without affecting seed oil content, seed protein content, or seed yield.  Based on the functional single-nucleotide polymorphism (SNP) chrA08_9529850 (C/A) in the promoter of BnaA08.DUF106, we developed a molecular marker (Bn_A8_SPAC_Marker) that could be used to facilitate breeding for low SPAC in B. napus.  Our findings provide valuable information for studying the genetic control of SPAC in B. napus.  Moreover, the candidate genes, favorable haplotypes, and molecular marker identified in this study will be useful for breeding low-SPAC B. napus varieties.

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Comparing simulated and observed cotton transpiration in relations to climate factors
Zeshan Zhang, Pengzhong Zhang, Yongfan Chen, Xuejiao Wang, Mingfeng Yang, Shuai Sun, Yutong Zhang, Sen Wang, Fen Ji, Chunrong Ji, Dao Xiang, Parhat Mamat, Lizhen Zhang
DOI: 10.1016/j.jia.2025.02.041 Online: 21 February 2025
Abstract6)      PDF in ScienceDirect      

Water-driven crop simulation models are commonly employed to evaluate crop yields and irrigation management strategies to improve agricultural water productivity.  Well-tested models can serve as powerful tools for guiding agricultural practices.  The objective of this study was to assess the capability of the AquaCrop model for simulation of cotton transpiration and water use under drip irrigation conditions comparing with field sap flow measurements.  A two-year field experiment (2020-2021) in cotton was conducted in Xinjiang China including two row spacing and two topping methods.  The model adequately estimated canopy cover with a normalized root mean square error (nRMSE) of less than 5% and a model efficiency (EF) close to 1.  The model estimation of transpiration obtained a good agreement with sap flow measurements (nRMSE=22.4%) across all years and treatments.  The model simulated water use efficiency (WUE, 4.42 g m-2 mm-1) of cotton were lower than those calculated from actual measurements with WUE of 4.79 g m-2 mm-1.  The estimated transpiration was slightly higher than that measured using sap flow meter due to an 11.5% of overestimation for crop coefficient in the model when cotton grew in short and dense canopy structure under drip irrigation and plastic film cover conditions.  Air temperature, vapor pressure difference and radiation had positive effects on cotton transpiration while humidity had negative effects.  The model could capture the trends of transpiration with climate factors, but the climatic effects were stronger than that of sap flow.  In conclusion, AquaCrop model is useful tool in optimizing cotton irrigation strategies.

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ScD27.2 gene regulation mechanism during sugarcane tillering and growth
Zhuandi Wu, Xin Hu, Wenzhi Wang, Zhengying Luo, Naveed ur Rehman, Peifang Zhao, Jiayong Liu, Shuzhen Zhang, Fenggang Zan, Xinlong Liu, Jiawen Guo
DOI: 10.1016/j.jia.2025.04.017 Online: 22 April 2025
Abstract4)      PDF in ScienceDirect      

The tiller number is a pivotal agronomic trait determining sugarcane (Saccharum spp. hybrids) yield. Strigolactones (SLs), as plant hormones, regulate plant architecture. DWARF27 (D27), a crucial enzyme in the SL biosynthetic pathway, catalyzes a reversible isomerization reaction. ScD27.2, the D27 homolog in sugarcane, harbors abiotic stress-responsive elements in its promoter, suggesting its significance in SL biosynthesis and stress tolerance. ScD27.2 may optimize sugarcane agronomic traits, particularly the tiller number and yield. Elucidating its mechanisms will facilitate the development of high-yielding, stress-tolerant sugarcane varieties. To study the role of D27 in sugarcane tillering, we silenced (via RNA interference (RNAi)) and overexpressed (OE) the key carotene isomerase gene ScD27.2 in sugarcane cultivar XTT22 plantlets. ScD27.2 expression decreased, and the tiller number increased in ScD27-RNAi-2 sugarcane compared with wild-type XTT22. ScD27.2 expression increased, and the tiller number decreased in ScD27-OE-1, ScD27-OE-5, and ScD27-OE-9 lines compared with wild-type XTT22. ScD27-OE-9 showed obvious lateral bud germination, while ScD27-RNAi-2 showed decreased drought tolerance. The tiller number and plant height of transgenic sugarcane plants differed significantly under normal light and water management conditions. Under long-term drought, the height of ScD27-RNAi-2 was significantly lower than that of wild-type XTT22 and ScD27-OE-9, exhibiting a dwarf, multi-tiller phenotype. Moreover, the SLs content in ScD27-RNAi-2 decreased significantly. We speculate that ScD27.2 regulates the tiller number of sugarcanes under drought stress, and the drought-related transcription factor ScMYB44 might be involved in the response of ScD27.2 to drought stress.

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