|
Bandelt H
J, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific
phylogenies. Molecular Biology and Evolution, 16,
37–48.
Bi Y, Chen
J, Zhang Z, Li M, Cai T, Sharshov K, Susloparov I, Shestopalov A, Wong G, He Y,
Xing Z, Sun J, Liu D, Liu Y, Liu L, Liu W, Lei F, Shi W, Gao G F. 2016. Highly
pathogenic avian influenza H5N1 Clade 2.3.2.1c virus in migratory birds,
2014–2015. Virologica Sinica, 31, 300–305.
Chai H, Li
X, Li M, Lv X, Yu W, Li Y, Sun J, Li Y, Sun H, Tian J, Xu Y, Bai X, Peng P, Xie
L, Qin S, An Q, Zhang F, Zhang H, Du J, Yang S, et al. 2022.
Emergence, evolution, and pathogenicity of influenza A (H7N4) virus in
shorebirds in China. Journal of Virology, 96,
e0171721.
Cui P,
Zeng X, Li X, Li Y, Shi J, Zhao C, Qu Z, Wang Y, Guo J, Gu W, Ma Q, Zhang Y,
Lin W, Li M, Tian J, Wang D, Xing X, Liu Y, Pan S, Zhang Y, et al. 2022. Genetic and biological characteristics of the globally circulating H5N8
avian influenza viruses and the protective efficacy offered by the poultry
vaccine currently used in China. Science China Life Sciences, 65, 795–808.
Fan S,
Deng G, Song J, Tian G, Suo Y, Jiang Y, Guan Y, Bu Z, Kawaoka Y, Chen H. 2009.
Two amino acid residues in the matrix protein M1 contribute to the virulence
difference of H5N1 avian influenza viruses in mice. Virology, 384,
28–32.
Fusaro A,
Monne I, Mulatti P, Zecchin B, Bonfanti L, Ormelli S, Milani A, Cecchettin K,
Lemey P, Moreno A, Massi P, Dorotea T, Marangon S, Terregino C. 2017. Genetic
diversity of highly pathogenic avian influenza A(H5N8/H5N5) viruses in Italy,
2016–17. Emerging Infectious Diseases, 23,
1543–1547.
GCH5N8RIV
(Global Consortium for H5N8 and Related Influenza Viruses). 2016. Role for migratory
wild birds in the global spread of avian influenza H5N8. Science, 354,
213–217.
Hu M, Yuan
S, Zhang K, Singh K, Ma Q, Zhou J, Chu H, Zheng B J. 2017. PB2 substitutions
V598T/I increase the virulence of H7N9 influenza A virus in mammals. Virology, 501, 92–101.
Jiao P,
Tian G, Li Y, Deng G, Jiang Y, Liu C, Liu W, Bu Z, Kawaoka Y, Chen H. 2008. A
single-amino-acid substitution in the NS1 protein changes the pathogenicity of
H5N1 avian influenza viruses in mice. Journal of Virology, 82, 1146–1154.
Kalyaanamoorthy
S, Minh B Q, Wong T K F, Von Haeseler A, Jermiin L S. 2017. ModelFinder: Fast
model selection for accurate phylogenetic estimates. Nature Methods, 14, 587–589.
Kim Y I,
Park S J, Kwon H I, Kim E H, Si Y J, Jeong J H, Lee I W, Nguyen H D, Kwon J J,
Choi W S, Song M S, Kim C J, Choi Y K. 2017. Genetic and phylogenetic
characterizations of a novel genotype of highly pathogenic avian influenza
(HPAI) H5N8 viruses in 2016/2017 in South Korea. Infection, Genetics and Evolution, 53, 56–67.
King J, Harder
T, Conraths F J, Beer M, Pohlmann A. 2021. The genetics of highly pathogenic
avian influenza viruses of subtype H5 in Germany, 2006–2020. Transboundary and Emerging Diseases, 68, 1136–1150.
Lee D H,
Sharshov K, Swayne D E, Kurskaya O, Sobolev I, Kabilov M, Alekseev A, Irza V,
Shestopalov A. 2017. Novel reassortant clade 2.3.4.4 avian influenza A(H5N8)
virus in wild aquatic birds, Russia, 2016. Emerging Infectious Diseases, 23, 359–360.
Lewis N S,
Banyard A C, Whittard E, Karibayev T, Al Kafagi T, Chvala I, Byrne A, Meruyert
Akberovna S, King J, Harder T, Grund C, Essen S, Reid S M, Brouwer A, Zinyakov
N G, Tegzhanov A, Irza V, Pohlmann A, Beer M, Fouchier R A M, et al. 2021. Emergence and spread of novel H5N8, H5N5 and H5N1 clade 2.3.4.4 highly
pathogenic avian influenza in 2020. Emerging Microbes and Infections, 10, 148–151.
Li J,
Zhang K, Chen Q, Zhang X, Sun Y, Bi Y, Zhang S, Gu J, Li J, Liu D, Liu W, Zhou
J. 2018. Three amino acid substitutions in the NS1 protein change the virus
replication of H5N1 influenza virus in human cells. Virology, 519,
64–73.
Li M, Liu
H, Bi Y, Sun J, Wong G, Liu D, Li L, Liu J, Chen Q, Wang H, He Y, Shi W, Gao G
F, Chen J. 2017. Highly pathogenic avian influenza A(H5N8) virus in wild
migratory birds, Qinghai Lake, China. Emerging Infectious Diseases, 23, 637–641.
Li X, Lv
X, Li Y, Peng P, Zhou R, Qin S, Ma E, Liu W, Fu T, Ma P, An Q, Li Y, Hua Y,
Wang Y, Lei C, Chu D, Sun H, Li Y, Gao Y, Chai H. 2021. Highly pathogenic avian
influenza A(H5N8) virus in swans, China, 2020. Emerging Infectious Diseases, 27, 1732–1734.
Li X, Lv
X, Li Y, Xie L, Peng P, An Q, Fu T, Qin S, Cui Y, Zhang C, Qin R, Qu F, Zhao Z,
Wang M, Xu Q, Li Y, Yang G, Chen G, Zhang J, Zheng H, et al. 2022.
Emergence, prevalence, and evolution of H5N8 avian influenza viruses in central
China, 2020. Emerging Microbes and Infections, 11,
73–82.
Li Y, Li
X, Lv X, Xu Q, Zhao Z, Qin S, Peng P, Qu F, Qin R, An Q, Wang M, Zhang Z, Luo
H, Zeng X, Wang Y, Hou Z, Sun H, Wang Y, Xu Y, Li Y, et al. 2022.
Highly pathogenic avian influenza a(H5Nx) virus of clade 2.3.4.4b emerging in
Tibet, China, 2021. Microbiology Spectrum, 10, e0064322.
Liu Y, Liu
C, Dang A, Sun S, Zhang D, Wang M, Chen F, Li Y, Xue R, Chen J, Lan Z. 2021.
Pathological analysis and genetic characterization of the first outbreak H5N8
subtype avian influenza virus isolated from wild swan in Shandong, China. Transboundary and Emerging Diseases, 68, 3200–3206.
Lv X, Li
X, Sun H, Li Y, Peng P, Qin S, Wang W, Li Y, An Q, Fu T, Qu F, Xu Q, Qin R,
Zhao Z, Wang M, Wang Y, Wang Y, Zeng X, Hou Z, Lei C, et al. 2022.
Highly Pathogenic avian influenza A (H5N8) clade 2.3.4.4b viruses in
satellite-tracked wild ducks, Ningxia, China, 2020. Emerging Infectious Diseases, 28, 1039–1042.
Marchenko
V Y, Susloparov I M, Komissarov A B, Fadeev A, Goncharova N I, Shipovalov A V,
Svyatchenko S V, Durymanov A G, Ilyicheva T N, Salchak L K, Svintitskaya E P,
Mikheev V N, Ryzhikov A B. 2017. Reintroduction of highly pathogenic avian
influenza A/H5N8 virus of clade 2.3.4.4. in Russia. Archives of Virology, 162, 1381–1385.
Minh B Q,
Nguyen M A, Von Haeseler A. 2013. Ultrafast approximation for phylogenetic
bootstrap. Molecular Biology and Evolution, 30,
1188–1195.
Nguyen L
T, Schmidt H A, Von Haeseler A, Minh B Q. 2015. IQ-TREE: A fast and effective
stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32, 268–274.
Pyankova O
G, Susloparov I M, Moiseeva A A, Kolosova N P, Onkhonova G S, Danilenko A V,
Vakalova E V, Shendo G L, Nekeshina N N, Noskova L N, Demina J V, Frolova N V,
Gavrilova E V, Maksyutov R A, Ryzhikov A B. 2021. Isolation of clade 2.3.4.4b
A(H5N8), a highly pathogenic avian influenza virus, from a worker during an
outbreak on a poultry farm, Russia, december 2020. Eurosurveillance, 26,
2100439.
Rozewicki
J, Li S, Amada K M, Standley D M, Katoh K. 2019. MAFFT-DASH: Integrated protein
sequence and structural alignment. Nucleic Acids Research, 47, W5–W10.
Smietanka
K, Swieton E, Kozak E, Wyrostek K, Tarasiuk K, Tomczyk G, Konopka B, Welz M,
Domanska-Blicharz K, Niemczuk K. 2020. Highly pathogenic avian influenza H5N8
in Poland in 2019–2020. Journal of Veterinary Research, 64, 469–476.
Song X M,
Wang R P, Wang L Y, Liu L P, Wang X C, Hao Y C. 2022. Community structure of
wetland birds and its response to water environment in Ordos Gull national
nature reserve. Chinese Journal of Wildlife, 43,
428–435. (in Chinese)
Suttie A,
Deng Y M, Greenhill A R, Dussart P, Horwood P F, Karlsson E A. 2019. Inventory
of molecular markers affecting biological characteristics of avian influenza A
viruses. Virus Genes, 55, 739–768.
Tavares E
S, Baker A J. 2008. Single mitochondrial gene barcodes reliably identify
sister-species in diverse clades of birds. BMC Evolutionary Biology, 8, 81.
Tian H,
Zhou S, Dong L, Van Boeckel T P, Cui Y, Newman S H, Takekawa J Y, Prosser D J,
Xiao X, Wu Y, Cazelles B, Huang S, Yang R, Grenfell B T, Xu B. 2015. Avian
influenza H5N1 viral and bird migration networks in Asia. Proceedings of the National Academy of Sciences of the United States of America, 112, 172–177.
De Vries
E, Guo H, Dai M, Rottier P J, Van Kuppeveld F J, De Haan C A. 2015. Rapid
emergence of highly pathogenic avian influenza subtypes from a subtype H5N1
hemagglutinin variant. Emerging Infectious Diseases, 21,
842–846.
Wang C C,
Wang S W, Zhang Y, Shi J Z, Yin X, Li C J, Wang X R. 2022. Development of a
cELISA for effective detection of the antibody against H7 subtype of avian
influenza virus. Journal of Integrative Agriculture, 21, 199–207.
Webster R
G, Bean W J, Gorman O T, Chambers T M, Kawaoka Y. 1992. Evolution and ecology
of influenza A viruses. Microbiological Reviews, 56, 152–179.
Yang Z Y,
Wei C J, Kong W P, Wu L, Xu L, Smith D F, Nabel G J. 2007. Immunization by
avian H5 influenza hemagglutinin mutants with altered receptor binding
specificity. Science, 317, 825–828.
Yehia N,
Naguib M M, Li R, Hagag N, El-Husseiny M, Mosaad Z, Nour A, Rabea N, Hasan W M,
Hassan M K, Harder T, Arafa A A. 2018. Multiple introductions of reassorted
highly pathogenic avian influenza viruses (H5N8) clade 2.3.4.4b causing
outbreaks in wild birds and poultry in Egypt. Infection, Genetics and Evolution, 58, 56–65.
Zeng X Y,
He X W, Meng F, Ma Q, Wang Y, Bao H M, Liu Y J, Deng G H, Shi J Z, Li Y B, Tian
G B, Chen H L. 2022. Protective efficacy of an H5/H7 trivalent inactivated
vaccine (H5-Re13, H5-Re14, and H7-Re4 strains) in chickens, ducks, and geese
against newly detected H5N1, H5N6, H5N8, and H7N9 viruses. Journal of Integrative Agriculture, 21, 2086–2094.
Zhang D,
Gao F, Jakovlic I, Zou H, Zhang J, Li W X, Wang G T. 2020. PhyloSuite: An
integrated and scalable desktop platform for streamlined molecular sequence data
management and evolutionary phylogenetics studies. Molecular Ecology Resources, 20, 348–355.
Zhang J,
Li X, Wang X, Ye H, Li B, Chen Y, Chen J, Zhang T, Qiu Z, Li H, Jia W, Liao M,
Qi W. 2021. Genomic evolution, transmission dynamics, and pathogenicity of
avian influenza A (H5N8) viruses emerging in China, 2020. Virus Evolution, 7, veab046.
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