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Genome-wide characterization of miRNA and siRNA pathways in the parasitoid wasp
Pteromalus puparum
XIAO Shan, FANG Qi, LIU Ming-ming, ZHANG Jiao, WANG Bei-bei, YAN Zhi-chao, WANG Fang, David W. STANLEY, YE Gong-yin
2022, 21 (
4
): 1106-1115. DOI:
10.1016/S2095-3119(20)63465-7
Abstract
(
136
)
PDF in ScienceDirect
microRNAs (miRNAs) and small interfering RNAs (siRNAs) are small non-coding RNAs (ncRNAs) that trigger RNA interference (RNAi) in eukaryotic organisms. The biogenesis pathways for these ncRNAs are well established in
Drosophila melanogaster
,
Aedes aegypti
,
Bombyx mori
and other insects, but lacking in hymenopteran species, particularly in parasitoid wasps.
Pteromalus puparum
is a parasitoid of pupal butterflies. This study identified and analyzed two pathways by interrogating the
P. puparum
genome. All core genes of the two pathways are present in the genome as a single copy, except for two genes in the siRNA pathway,
R2D2
(two copies) and
Argonaute-2
(three). Conserved domain analyses showed the protein structures in
P. puparum
were similar to cognate proteins in other insect species. Phylogenetic analyses of hymenopteran
Dicer
and
Argonaute
genes suggested that the siRNA pathway-related genes evolved faster than those in the miRNA pathway. The study found a decelerated evolution rate of
P. puparum
Dicer-2 with respect to Dicer-1, which was contrary to other hymenopterans. Expression analyses revealed high mRNA levels for all miRNA pathway genes in
P. puparum
adults and the siRNA related genes were expressed in different patterns. The findings add valuable new knowledge of the miRNA and siRNA pathways and their regulatory actions in parasitoid wasps.
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Effects of planting patterns on yield, quality, and defoliation in machine-harvested cotton
WANG Fang-yong, HAN Huan-yong, LIN Hai, CHEN Bing, KONG Xian-hui, NING Xin-zhu, WANG Xu-wen, YU Yu, LIU Jing-de
2019, 18 (
9
): 2019-2028. DOI:
10.1016/S2095-3119(19)62604-3
Abstract
(
122
)
PDF in ScienceDirect
The aim of this study was to elucidate the effects of different machine-harvested cotton-planting patterns on defoliation, yield, and fiber quality in cotton and to provide support for improving the quality of machine-harvested cotton. In the 2015 and 2016 growing seasons, the Xinluzao 45 (XLZ45) and Xinluzao 62 (XLZ62) cultivars, which are primarily cultivated in northern Xinjiang, were used as study materials. Conventional wide-narrow row (WNR), wide and ultra-narrow row (UNR), wide-row spacing with high density (HWR), and wide-row spacing with low density (LWR) planting patterns were used to assess the effects of planting patterns on defoliation, yield, and fiber quality. Compared with WNR, the seed cotton yields were significantly decreased by 2.06–5.48% for UNR and by 2.50–6.99% for LWR, respectively. The main cause of reduced yield was a reduction in bolls per unit area. The variation in HWR yield was –1.07–1.07% with reduced bolls per unit area and increased boll weight, thus demonstrating stable production. In terms of fiber quality indicators, the planting patterns only showed significant effects on the micronaire value, with wide-row spacing patterns showing an increase in the micronaire values. The defoliation and boll-opening results showed that the number of leaves and dried leaves in HWR was the lowest among the four planting patterns. Prior to the application of defoliating agent and before machine-harvesting, the numbers of leaves per individual plant in HWR were decreased by 14.45 and 25.00% on average, respectively, compared with WNR, while the number of leaves per unit area was decreased by 27.44 and 36.21% on average, respectively. The rates of boll-opening and defoliation in HWR were the highest. Specifically, the boll-opening rate before defoliation and machine-harvesting in HWR was 44.54 and 5.94% higher on average than in WNR, while the defoliation rate prior to machine-harvesting was 3.45% higher on average than in WNR. The numbers of ineffective defoliated leaves and leaf trash in HWR were the lowest, decreased by 33.40 and 32.43%, respectively, compared with WNR. In conclusion, the HWR planting pattern is associated with a high and stable yield, does not affect fiber quality, promotes early maturation, and can effectively decrease the amount of leaf trash in machine-picked seed cotton, and thus its use is able to improve the quality of machine-harvested cotton.
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Mycoplasma leachii
causes bovine mastitis: Evidence from clinical symptoms, histopathology and immunohistochemistry
CHANG Ji-tao, YU De-bin, LIANG Jian-bin, CHEN Jia, WANG Jian-fa, WANG Fang, JIANG Zhi-gang, HE Xi-jun, WU Rui, YU Li
2019, 18 (
1
): 160-168. DOI:
10.1016/S2095-3119(18)62051-9
Abstract
(
291
)
PDF
(8004KB)(
196
)
Twelve quarters of six lactating cows were inoculated with
Mycoplasma leachii
strain GN407 through intramammary ductal infusion; another 12 quarters were inoculated with heat-inactivated
M. leachii
culture medium as negative controls. Multidisciplinary procedures, including clinical assessment, etiology assessment, pathology and immunohistochemistry (IHC), were used to elucidate the pathogenicity of
M. leachii
in bovine mastitis. From post-inoculation days (PIDs) 3 to 9, 12 inoculated quarters developed mild to severe clinical mastitis and mammary tissue histopathological changes, including inflammatory cell infiltration and architectural destruction of mammary gland ducts. The
M. leachii
antigen was also detected by IHC in the mammary gland epithelial cells of the inoculated quarters as a weak signal on PID 6 and as a strong signal on PID 9. The control quarters also developed mild mastitis and histopathological changes on PID 9, and
M. leachii
was also detected by IHC. Throughout the experimental period, the quarters of the negative control cow were clinically and pathologically normal, and the
M. leachii
antigen was not detected. In conclusion, direct histological and immunohistochemical evidence confirmed that
M. leachii
causes clinical bovine mastitis through histopathological lesions induced by invasion of the pathogen into mammary gland cells and through inflammatory cell infiltration.
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Mycoplasma leachii
causes polyarthritis in calves
via
the blood route but is not associated with pneumonia
CHANG Ji-tao, WANG Guan-bo, ZHANG Yue, WANG Fang, JIANG Zhi-gang, YU Li
2018, 17 (
11
): 2536-2545. DOI:
10.1016/S2095-3119(18)62050-7
Abstract
(
298
)
PDF
(4124KB)(
233
)
Mycoplasma leachii
was initially isolated from arthritic calves in South Queensland, Australia, and its ability to cause clinical polyarthritis in calves was demonstrated by experimental infection. However, the source of
M. leachii
infection in calves and its means of spreading are not well known. In this study, one-month-old calves were inoculated with cultures of
M. leachii
or joint fluid (collected from
M. leachii
-infected calves) through the intraarticular, intravenous, intratracheal, intranasal or oral routes. Multidisciplinary procedures, including clinical assessment, etiology assessment, pathology and immunohistochemistry (IHC), were used to evaluate the pathogenicity of
M. leachii
in calves and to elucidate the transmission route of
M. leachii
infection in calves. The results showed that all calves inoculated intraarticularly with cultured GN407 or joint fluid and two-thirds of the calves inoculated intravenously with joint fluid developed severe polyarthritis, and the
M. leachii
antigen was detected in the joints of all infected calves by IHC and PCR. In contrast, calves inoculated with cultured
M. leachii
or joint fluid through the intratracheal, intranasal or oral routes did not show any
M. leachii
infection in the clinical assessment, etiology assessment, or pathology and IHC results. These results indicated that polyarthritis caused by
M. leachii
in calves is transmitted via the blood route; however, this disease is not transmitted through the respiratory or digestive routes. In addition, the
M. leachii
antigen was not detected in the lungs of all the inoculated calves using IHC and PCR, indicating that
M. leachii
is not associated with pneumonia, even in the calves inoculated through the respiratory duct. These findings are important information for the prevention and control of calf polyarthritis caused by
M. leachii
.
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Conditional and unconditional QTLs mapping of gluten strength in common wheat (
Triticum aestivum
L.)
LIU Tong-tong, LIU Kai, WANG Fang-fang, ZHANG Ying, LI Qing-fang, ZHANG Kai-ran, XIE Chu-peng, TIAN Ji-chun, CHEN Jian-sheng
2017, 16 (
10
): 2145-2155. DOI:
10.1016/S2095-3119(16)61564-2
Abstract
(
707
)
PDF in ScienceDirect
Dissecting the genetic relationships among gluten-related traits is important for high quality wheat breeding. Quantitative trait loci (QTLs) analysis for gluten strength, as measured by sedimentation volume (SV) and gluten index (GI), was performed using the QTLNetwork 2.0 software. Recombinant inbred lines (RILs) derived from the winter wheat varieties Shannong 01-35×Gaocheng 9411 were used for the study. A total of seven additive QTLs for gluten strength were identified using an unconditional analysis.
QGi1D-13
and
QSv1D-14
were detected through unconditional and conditional QTLs mapping, which explained 9.15–45.08% of the phenotypic variation. QTLs only identified under conditional QTL mapping were located in three marker intervals:
WPT-3743–GLU-D1
(1D),
WPT-7001–WMC258
(1B), and
WPT-8682–WPT-5562
(1B). Six pairs of epistatic QTLs distributed nine chromosomes were identified. Of these, two main effect QTLs (
QGi1D-13
and
QSv1D-14
) and 12 pairs of epistatic QTLs were involved in interactions with the environment. The results indicated that chromosomes 1B and 1D are important for the improvement of gluten strength in common wheat. The combination of conditional and unconditional QTLs mapping could be useful for a better understanding of the interdependence of different traits at the QTL molecular level.
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Thrips-mediated impacts from transgenic rice expressing Cry1Ab on ecological fitness of non-target predator
Orius tantilus
(Hemiptera: Anthocoridae)
Akhtar Zunnu Raen, DANG Cong, WANG Fang, PENG Yu-fa, YE Gong-yin
2016, 15 (
9
): 2059-2069. DOI:
10.1016/S2095-3119(16)61414-4
Abstract
(
1461
)
PDF in ScienceDirect
Various rice lines have been genetically modified with genes from Bacillus thuringiensis (
Bt
) to continuously produce
Bt
insecticidal proteins against lepidopteran larvae. The
Bt
insecticidal protein constantly expresses in the plants to create an opportunity for non-target herbivores to acquire and convey the protein to their predators or parasitoids across trophic levels. This paper evaluates the effects of
Bt
rice (namely, Kemindao 1 (KMD1) and Kemindao 2 (KMD2)) expressing Cry1Ab as compared to its non-
Bt
control line, Xiushui 11 on non-target predator
Orius tantilus
(a generalist predatory anthocorid of thrips) under laboratory and field conditions. To measure several biological parameters such as total nymphal duration and fecundity of this bug, it was reared on thrips and pollens of KMD1 and KMD2 as compared to their control under laboratory conditions. By comparison with the control,
Bt
rice did not significantly affect main life-history characteristics (total nymphal duration, female adult longevity, oviposition period and fecundity) of this anthocorid preying on
Bt
rice-fed thrips along with
Bt
rice pollens, except that the fecundity of this predator for KMD1 was distinctly lower as compared with KMD2 or the control. Enzyme-linked immunosorbent assay (ELISA) results showed that no Cry1Ab protein was detected in this predator fed on thrips or rice pollen from Bt rice but was in
Bt
rice pollens. With the beat plate, plastic bag and color trap sampling methods, two-year field monitoring of
O. tantilus
abundance demonstrated that
Bt
rice had no significant detrimental effects on the population dynamics and seasonal average densities of this predatory anthocorid as compared with the control. Thus, it is suggested that growing our tested Bt rice (KMD1 and KMD2) producing Cry1Ab will pose a negligible risk to the anthocorid,
O. tantilus
.
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Sequencing and Phylogenetic Analysis of Potato virus Y Liaoning Isolate in China
WANG Fang, GAO Zheng-liang, AN Meng-nan, ZHOU Ben-guo , WU Yuan-hua
2013, 12 (
7
): 1195-1200. DOI:
10.1016/S2095-3119(13)60442-6
Abstract
(
1657
)
PDF in ScienceDirect
Complete genome sequence of Potato virus Y Liaoning isolate (PVY-LN) causing tobacco vein necrosis symptoms were isolated from Liaoning Province in China. Genome sequences of PVY-LN was 9 714 nucleotides in length, excluding the 3´- terminal poly (A) tail. PVY-LN encodes a single long open reading frame (ORF) of polyprotein that is predicted to be cleaved into ten mature proteins by three viral proteases. No recombination can be predicted in PVY-LN sequences compared with that of the other PVY strains using Recombination Detection Programe v. 4.16 (RDP4). Complete genome sequence comparison and phylogenetic analysis indicated that PVY-LN is closely related to PVY necrosis strain (PVYN).
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Transplantation of Goat Bone Marrow Mesenchymal Stem Cells (gMSCs) Help Restore Spermatogenesis in Endogenous Germ Cells-Depleted Mouse Models
WANG Fang, LIU Chao, ZHANG Shan-shan, LIU Wei-shuai , HUA Jin-lian
2013, 12 (
3
): 483-494. DOI:
10.1016/S2095-3119(13)60249-X
Abstract
(
1668
)
PDF in ScienceDirect
Mesenchymal stem cells (MSCs) derived from bone marrow are a well-characterized population of adult stem cells that can be maintained and propagated in culture for a long time with the capacity to form a variety of cell types. This study investigated the characteristics of dairy goat bone marrow MSCs (gMSCs) and their differentiation potential toward germ cells in vitro, and to test their potential in vivo, these cells were transplanted into seminiferous tubes of endogenous germ cells-depleted mouse models. The results showed that characteristic gMSC lines were established and a small population of gMSCs transdifferentiated into male germ cell-like cells which expressed Stra8 after induction with retinoic acid (RA), as analysed by reverse transcription-polymerase chain reaction (RT-PCR) and immunofluorescence. Further, we transplanted the gMSCs into endogenous germ cells-depleted mouse models. A variety of analysis demonstrated that gMSCs might differentiate into male germ cells and helped spermatogenesis in endogenous germ cells depleted mouse models at 30 d after transplantation. The gMSCs could be used as a potential source of cells for reproductive studies and a neoadjuvant therapy for the spermatogenesis anomaly. Moreover, these cells may offer a new strategy for male infertility and an alternative approach for production of transgenic animals.
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Levels of Germinable Seed in Topsoil and Yak Dung on an Alpine Meadow on the North-East Qinghai-Tibetan Plateau
YU Xiao-jun, XU Chang-lin, WANG Fang, SHANG Zhan-huan , LONG Rui-jun
2013, 12 (
12
): 2243-2249. DOI:
10.1016/S2095-3119(13)60652-8
Abstract
(
1566
)
PDF in ScienceDirect
In order to clarify the interactive mechanism between grazing yak and alpine meadow on the Qinghai-Tibetan Plateau, our study assessed seed density (by species) in the topsoil of alpine meadow with different grazing intensities in the Tianzhu area, north-eastern margins of the Qinghai-Tibetan Plateau and their rates of occurrence in yak dung. Seed density in the topsoil of the lightly grazed, moderately grazed, heavily grazed and extremely grazed alpine meadows in November, 2010 were 1 551, 1 692, 2 660 and 1 830 grains m-2, while in the same meadows in April, 2011 densities were 1 530, 2 404, 2 530 and 2 692 grains m-2, respectively. In the cold season pasture, mean seed density in yak dung from November to April in the lightly grazed, moderately grazed, heavily grazed and extremely grazed sites were 121, 127, 187, and 120 grains kg-1 of dry yak dung. The proportion of total seed numbers in yak dung to soil seed bank in lightly grazed, moderately grazed, heavily grazed and extremely grazed alpine meadow was 1.40, 2.62, 0.69, and 0.90%. 12 species out of the 47 were not found in topsoil but were found in yak dung, 10 species out of 45 were not found in yak dung but were found in the topsoil. Endozoochorous dispersal by yaks is therefore very important for soil seed bank and plant biodiversity and population dynamics in alpine meadows.
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