Journals
  Publication Years
  Keywords
Search within results Open Search
Please wait a minute...
For Selected: Toggle Thumbnails
BjuB05.GS1.4 promotes nitrogen assimilation and participates in the domestication of shoot nitrogen use efficiency in Brassica juncea
Rumeng Wang, Jinsong Luo, Jian Zeng, Yingying Xiong, Tianchu Shu, Dawei He, Zhongsong Liu, Zhenhua Zhang
2025, 24 (5): 1800-1812.   DOI: 10.1016/j.jia.2024.08.007
Abstract45)      PDF in ScienceDirect      
Elucidating crops’ physiological and molecular mechanisms to adapt to low nitrogen environment and promoting nitrogen transfer from senescent leaves to new leaves is crucial in improving Brassica’s nitrogen use efficiency (NUE).  Glutamine synthetase gene (GS) plays a vital role in helping plants reassimilate ammonium released from protein degradation in leaves, and it was the focus of our research on this topic.  In this study, we identified high (H141) and low (L65) NUE genotypes of Brassica juncea with different responses to low-nitrogen stress.  We found that H141 has a lower nitrate content but higher ammonium and free amino acid contents as well as higher nitrate reductase and GS activities in the shoots.  These physiological indicators are responsible for the high NUE of H141.  Whole-genome resequencing data revealed that 5,880 genes associated with NUE are polymorphic between H141 and L65.  These genes participate in various amino acid, carbohydrate, and energy metabolic pathways.  Haplotype analysis revealed two haplotypes for BjuB05.GS1.4, Hap1 and Hap2, which have multiple single nucleotide polymorphisms or insertions/deletions in the regulatory regions of the 5´ and 3´ untranslated regions and introns.  Furthermore, the shoot NUE of Hap1 is significantly lower than that of Hap2.  These two haplotypes of BjuB05.GS1.4 lead to differences in the shoot NUEs of different genetic populations of mustard and are associated with the local soil nitrogen content, suggesting that they might help mustard to adapt to different geographic localities.  In conclusion, the results of our study shed light on the physiological and molecular mechanisms underlying different mustard NUE genotypes and demonstrate the enormous potential of NUE breeding in Bjuncea.


Reference | Related Articles | Metrics
Fine control of growth and thermotolerance in the plant response to heat stress
Yulong Zhao, Song Liu, Kaifeng Yang, Xiuli Hu, Haifang Jiang
2025, 24 (2): 409-428.   DOI: 10.1016/j.jia.2024.03.028
Abstract100)      PDF in ScienceDirect      
Global warming impacts plant growth and development, which in turn threatens food security.  Plants can clearly respond to warm-temperature (such as by thermomorphogenesis) and high-temperature stresses.  At the molecular level, many small molecules play crucial roles in balancing growth and defense, and stable high yields can be achieved by fine-tuning the responses to external stimuli.  Therefore, it is essential to understand the molecular mechanisms underlying plant growth in response to heat stress and how plants can adjust their biological processes to survive heat stress conditions.  In this review, we summarize the heat-responsive genetic networks in plants and crop plants based on recent studies.  We focus on how plants sense the elevated temperatures and initiate the cellular and metabolic responses that allow them to adapt to the adverse growing conditions.  We also describe the trade-off between plant growth and responses to heat stress.  Specifically, we address the regulatory network of plant responses to heat stress, which will facilitate the discovery of novel thermotolerance genes and provide new opportunities for agricultural applications.
Reference | Related Articles | Metrics
Deletion of Salmonella pathogenicity islands SPI-1, 2 and 3 induces substantial morphological and metabolic alternation and protective immune potential
Gaosong Liu, Xuelian Lü, Qiufeng Tian, Wanjiang Zhang, Fei Yi, Yueling Zhang, Shenye Yu
2025, 24 (1): 272-289.   DOI: 10.1016/j.jia.2023.11.009
Abstract129)      PDF in ScienceDirect      

The Salmonella pathogenicity islands (SPIs) play crucial roles in the progression of Salmonella infection.  In this study, we constructed an improved λ Red homologous recombination system to prepare single and triple deletion mutants of 3 prominent SPIs (SPI-1, 2, and 3), aiming at the impact of deletion on morphology, carbon source metabolism, adhesion and invasion capacity, in vivo colonization, and immune efficacy in chicks.  Our examination revealed that the surface of the single deletion mutants (SM6ΔSPI1, ΔSPI2, and ΔSPI3) exhibited a more rugged texture and appeared to be enveloped in a layer of transparent colloid, whereas the morphology of the triple deletion mutant (SM6ΔSPI1&2&3) remained unaltered when compared to the parent strain.  The carbon metabolic spectrum of the SPI mutants underwent profound alterations, with a notable and statistically significant modification observed in 30 out of 95 carbon sources, primarily carbohydrates (17 out of 30).  Furthermore, the adhesion capacity of the 4 mutants to Caco-2 cells was significantly reduced when compared to that of the parent strain.  Moreover, the invasion capacity of mutants SM6ΔSPI1 and SM6ΔSPI1&2&3 exhibited a substantial decrease, while it was enhanced to varying degrees for SM6ΔSPI3 and SM6ΔSPI2.  Importantly, none of the 4 mutants induced any clinical symptoms in the chicks.  However, they did transiently colonize the spleen and liver.  Notably, the SM6ΔSPI1&2&3 mutant was rapidly cleared from both the spleen and liver within 8 days post-infection and no notable pathological changes were observed in the organs.  Additionally, when challenged, the mutants immunized groups displayed a significant increase in antibody levels and alterations in the CD3+CD4+ and CD3+CD8+ subpopulations, and the levels of IL-4 and IFN-γ cytokines in the SM6ΔSPI1&2&3 immunized chicken serum surpassed those of other groups.  In summary, the successful construction of the 4 SPI mutants lays the groundwork for further exploration into the pathogenic (including metabolic) mechanisms of SPIs and the development of safe and effective live attenuated Salmonella vaccines or carriers.

Reference | Related Articles | Metrics
Silencing of early auxin responsive genes MdGH3-2/12 reduces the resistance to Fusarium solani in apple
Qianwei Liu, Shuo Xu, Lu Jin, Xi Yu, Chao Yang, Xiaomin Liu, Zhijun Zhang, Yusong Liu, Chao Li, Fengwang Ma
2024, 23 (9): 3012-3024.   DOI: 10.1016/j.jia.2024.03.003
Abstract92)      PDF in ScienceDirect      
Apple replant disease (ARD) has led to severe yield and quality reduction in the apple industry.  Fusarium solani (Fsolani) has been identified as one of the main microbial pathogens responsible for ARD.  Auxin (indole-3-acetic acid, IAA), an endogenous hormone in plants, is involved in almost all plant growth and development processes and plays a role in plant immunity against pathogens.  Gretchen Hagen3 (GH3) is one of the early/primary auxin response genes.  The aim of this study was to evaluate the function of MdGH3-2 and MdGH3-12 in the defense response of Fsolani by treating MdGH3-2/12 RNAi plants with Fsolani.  The results show that under Fsolani infection, RNAi of MdGH3-2/12 inhibited plant biomass accumulation and exacerbated root damage.  After inoculation with Fsolani, MdGH3-2/12 RNAi inhibited the biosynthesis of acid-amido synthetase.  This led to the inhibition of free IAA combining with amino acids, resulting in excessive free IAA accumulation.  This excessive free IAA altered plant tissue structure, accelerated fungal hyphal invasion, reduced the activity of antioxidant enzymes (SOD, POD and CAT), increased the reactive oxygen species (ROS) level, and reduced total chlorophyll content and photosynthetic ability, while regulating the expression of PR-related genes including PR1, PR4, PR5 and PR8.  It also changed the contents of plant hormones and amino acids, and ultimately reduced the resistance to Fsolani.  In conclusion, these results demonstrate that MdGH3-2 and MdGH3-12 play an important role in apple tolerance to Fsolani and ARD.


Reference | Related Articles | Metrics
Long-term effect of subacute ruminal acidosis on the morphology and function of rumen epithelial barrier in lactating goats
HU Hong-lian, YANG Shu-qing, CHENG Meng, SONG Li-wen, XU Ming, GAO Min, YU Zhong-tang
2022, 21 (11): 3302-3313.   DOI: 10.1016/j.jia.2022.08.087
Abstract180)      PDF in ScienceDirect      

Grain-induced subacute ruminal acidosis (SARA) impairs rumen epithelial barrier function, but it is yet to be determined if SARA can cause persistent damage to the morphology and function of the rumen epithelial barrier.  The objective of the present study was to investigate if SARA has persistent effects on the morphological structure and permeability of ruminal epithelium and the expression of the genes involved in epithelial barrier function using a lactating goat model.  Twelve mid-lactating Saanen goats with rumen cannulas were randomly assigned to 1 of 2 groups: control group (Ctrl, n=4) fed a basal diet with a non-fiber carbohydrate (NFC) to neutral detergent fiber (NDF) ratio of 1.40, and SARA group (SARA, n=8) fed the same basal diet but with increasing NFC to NDF ratio from 1.4 to 1.79, 2.31, and 3.23 overtime to induce SARA.  At the end of the SARA challenge (post-SARA), 4 goats were randomly selected from the SARA group and fed only hay mixture ad libitum for another 4 weeks to allow for restitution (post-SARA).  Ruminal pH was continuously recorded to monitor the severity of SARA.  Samples of the ventral ruminal epithelium were collected after slaughter to examine the structural and functional changes of the ruminal epithelium using transmission electron microscopy (TEM), Ussing chambers, qRT-PCR, and Western bolt analyses.  Compared with the Ctrl group, ruminal papilla length, width, surface area and thickness of stratum corneum increased (P<0.05), while stratum spinosum and basale thickness, and total depth of the epithelium decreased (P<0.05) in the SARA group.  These changes diminished or tended to return to the levels of the Ctrl group in the post-SARA group (P>0.05).  The SARA challenge also decreased cellular junction and widened the intercellular space between epithelial cells.  Rumen transepithelial short-circuit current (Isc), tissue conductance (Gt), and mucosa-to-serosa flux of paracellular horseradish peroxidase (HRP) all increased (P<0.05) both in the SARA and post-SARA groups, which indicates that SARA can induce a sustained increase in epithelial permeability and barrier dysfunction.  Moreover, the mRNA and protein expressions of CLDN1, OCLN and ZO-1 were down-regulated (P<0.01) in both the SARA and post-SARA groups.  The results of this study showed that SARA could result in sustained epithelial barrier dysfunction, at both structural and functional levels, which is associated with decreased expression of rumen epithelial tight junction proteins, and the restitution of rumen epithelial barrier function is slower than that of its morphology.

Reference | Related Articles | Metrics
Fingerprinting 146 Chinese chestnut (Castanea mollissima Blume) accessions and selecting a core collection using SSR markers
NIE Xing-hua, WANG Ze-hua, LIU Ning-wei, SONG Li, YAN Bo-qian, XING Yu, ZHANG Qing, FANG Ke-feng, ZHAO Yong-lian, CHEN Xin, WANG Guang-peng, QIN Ling, CAO Qing-qin
2021, 20 (5): 1277-1286.   DOI: 10.1016/S2095-3119(20)63400-1
Abstract160)      PDF in ScienceDirect      
Chinese chestnut is an important nut tree around the world.  Although the types of Chinese chestnut resources are abundant, resource utilization and protection of chestnut accessions are still very limited.  Here, we fingerprinted and determined the genetic relationships and core collections of Chinese chestnuts using 18 fluorescently labeled SSR markers generated from 146 chestnut accessions.  Our analyses showed that these markers from the tested accessions are highly polymorphic, with an average allele number (Na) and polymorphic information content (PIC) of 8.100 and 0.622 per locus, respectively.  Using these strongly distinguishing markers, we successfully constructed unique fingerprints for 146 chestnut accessions and selected seven of the SSR markers as core markers to rapidly distinguish different accessions.  Our exploration of the genetic relationships among the five cultivar groups indicated that Chinese chestnut accessions are divided into three regional type groups: group I (North China (NC) and Northwest China (NWC) cultivar groups), group II (middle and lower reaches of the Yangtze River (MLY) cultivar group) and group III (Southeast China (SEC) and Southwest China (SWC) cultivar groups).  Finally, we selected 45 core collection members which represent the most genetic diversity of Chinese chestnut accessions.  This study provides valuable information for identifying chestnut accessions and understanding the phylogenetic relationships among cultivar groups, which can serve as the basis for efficient breeding in the future.
Reference | Related Articles | Metrics
The effects of aerated irrigation on soil respiration, oxygen, and porosity
ZHU Yan, Miles Dyck, CAI Huan-jie, SONG Li-bing, CHEN Hui
2019, 18 (12): 2854-2868.   DOI: 10.1016/S2095-3119(19)62618-3
Abstract112)      PDF in ScienceDirect      
To ameliorate soil oxygen deficiencies around subsurface drip irrigation (SDI) drippers, aerated irrigation (AI) was introduced to supply aerated water to the soil through venturi installed in the SDI pipeline.  The objectives of this study were to assess the effects of AI on soil respiration (SR), air-filled porosity (AFP), soil temperature (ST), and oxygen concentrations (OCC).  Total soil respiration (TSR), biological activity temperature index (BAT), and soil oxygen consumption (OCS) based on SR, ST, and OCC, respectively, were subsequently calculated to explore the relationships between TSR, BAT, OCS, OCC, and AFP.  Greenhouse-based experiments included two treatments: AI and unaerated SDI (CK), during the tomato growing season in the fall of 2015.  The results showed that compared with CK, AI treatment significantly increased OCC and AFP (by 16 and 7.4%, respectively), as well as TSR and OCS (by 24.21 and 22.91%, respectively) (P<0.05).  Mean fruit yield with AI treatment was also 23% higher (P<0.05) than that with CK.  When BAT was controlled, partial correlations between TSR, OCS, OCC, and AFP were all significant in the AI treatment but not in the CK treatment.  TSR was more sensitive to the interaction effects of OCC, OCS, AFP, and BAT under the AI treatment.  Thus, the significantly increased TSR with AI appeared to be due to the favorable soil aeration conditi ons (higher OCC and AFP).  Furthermore, the improvements in soil aeration conditions and respiration with AI appeared to facilitate the improvement in fruit yields, which also suggests the economic benefits of AI.
Reference | Related Articles | Metrics
Evolutionary analysis of plant jacalin-related lectins (JRLs) family and expression of rice JRLs in response to Magnaporthe oryzae
HAN Yi-juan, ZHONG Zhen-hui, SONG Lin-lin, Olsson Stefan, WANG Zong-hua, LU Guo-dong
2018, 17 (06): 1252-1267.   DOI: 10.1016/S2095-3119(17)61809-4
Abstract482)      PDF in ScienceDirect      
Jacalin-related lectins (JRLs) are widely distributed carbohydrate-binding proteins in the plant kingdom, which play key roles in development and pathogen defense.  In this study, we profiled evolutionary trajectory of JRLs family in 30 plant species and identified domain diversification and recombination leading to different responsive patterns of JRLs in rice during defense against rice blast.  All of 30 plant species analyzed in our study have two types of JRLs by containing either a single jacalin or repeated jacalin domains, while chimeric jacalins exist in more than half of the species, especially in the Poaceae family.  Moreover, Poaceae species have evolved two types of unique chimeric JRLs by fusing the jacalin domain(s) with dirigent or NB_ARC domain, some of which positively regulate plant immunity.  Seven Poaceae-specific JRLs are found in the rice genome.  We further found expression of rice JRLs, including four Poaceae-specific JRLs, are induced by Magnaporthe oryzae infections at either early or late infection stages.  Overall, the results present the evolutionary trajectory of JRLs in plant and highlight essential roles of Poaceae specific JRLs against pathogen attacks in rice.
Reference | Related Articles | Metrics
Genetic Relationships Among Chinese Maize OPVs Based on SSR Markers
SONG Li-ya, LIU Xue, CHEN Wei-guo, HAO Zhuan-fang, BAI Li , ZHANG De-gui
2013, 12 (7): 1130-1137.   DOI: 10.1016/S2095-3119(13)60341-X
Abstract1517)      PDF in ScienceDirect      
Bulk-SSR method was used to analyze the genetic diversity of 44 open-pollinated varieties collected from Henan, Shandong, Shanxi, and Jilin provinces and Guangxi Zhuang Autonomous Region, China using 70 pairs of SSR primers. The purposes of this study were to (1) compare the genetic diversity among 44 Chinese maize open-pollinated varieties; (2) estimate the minimum number of alleles for construction of a stable dendrogram; and (3) trace the genetic relationships among local germplasm from different regions of China. In total, these 70 SSR primers yielded 292 alleles in 176 samples (4×44) analyzed. The number of alleles per locus was 4.17 on average and ranged from 2 to 8. The highest number of alleles per open-pollinated variety (55.25) was detected in Shanxi germplasm, which indicated that open-pollinated varieties from Shanxi possessed the largest genetic diversity among those from the five locations. The correlation coefficients between different genetic similarity matrices suggested that 200 alleles were sufficient for analysis of the genetic diversity of these 44 open-pollinated varieties. The cluster analysis showed that 44 open-pollinated varieties collected from three growing regions in China were accurately classified into three groups that were highly consistent with their geographic origins, and there is no correlation between GS and geographic distance in this study.
Reference | Related Articles | Metrics
Agricultural Market Name Geo-Locating System Based on an Administrative Ontology and Web Search Engine
HU Yi-min, SONG Liang-tu, WEI Yuan-yuan, HUANG He, WANG Xue
2012, 11 (5): 849-857.   DOI: 10.1016/S1671-2927(00)8607
Abstract1222)      PDF in ScienceDirect      
The problem of associating the agricultural market names on web sites with their locations is essential for geographical analysis of the agricultural products. In this paper, an algorithm which employs the administrative ontology and the statistics from the search results were proposed. The experiments with 100 market names collected from web sites were conducted. The experimental results demonstrate that the algorithm proposed obtains satisfactory performance in resolving the problem above, thus the effectiveness of the method is verified.
Reference | Related Articles | Metrics
Influence of PPV, PRV and PRRSV on Efficacy of the Lapinized Hog Cholera Vaccine and Pathogenicity of Classical swine fever virus
NING Yi-bao, ZHAO Yun, WANG Qin, FAN Xue-zheng, QIN Yu-ming, ZHANG Guang-chuan, XU Lu, QIU Hui-shen, WANG Zai-shi, SONG Li, SHEN Qing-chun, ZHAO Qi-zu
2012, 12 (11): 1892-1897.   DOI: 10.1016/S1671-2927(00)8725
Abstract1415)      PDF in ScienceDirect      
Classical swine fever caused by Classical swine fever virus (CSFV) is a serious problem for swine industries in developing countries, which successful control of the disease have been relying on vaccination. However, classical swine fever still occurs in some immunized swine herds for various reasons. In this study, we conducted animal experiments to examine the influence of single or mixed infection with Porcine parvo virus (PPV), Pseudorabies virus (PRV) and Porcine reproductive and respiratory syndrome virus (PRRSV) on the protective immunity induced by the Lapinized hog cholera virus (HCLV) vaccine and the pathogenicity of CSFV. In experiment 1, pigs were first inoculated with PPV, PRV or PRRSV, then immunized with HCLV, and finally challenged with a highly virulent CSFV Shimen strain. All of the pigs immunized with HCLV survived after the challenge, while all of the pigs in the non-immunized control group died after the challenge. The pigs in the group immunized with HCLV did not show any clinical symptoms of classical swine fever and were negative with CSFV after the challenge. The pigs infected with the non-CSFV before HCLV immunization did not display any clinical symptoms after the challenge with CSFV Shiman strain, but 11 of the 12 pigs were positive with CSFV. In experiment 2, pre-infections with PPV, PRV, and PRRSV were followed by inoculation with a low-virulence CSFV strain (CSFV 39), and then the pigs were challenged with the CSFV Shimen strain. Infections by either PPV, PRV or PRRSV did not enhance the virulence of CSFV-39, but pigs infected by a mixture of the 3 viruses developed clinical symptoms after inoculation with CSFV-39. The mixed infection also increased mortality caused by the challenge with the CSFV Shimen strain. Together, these results showed PPV, PRV and PRRSV infections in pigs can reduce the efficacy of the HCLV vaccine and enhance the pathogenicity of CSFV, which may partly explain the immunization failure against CSFV in some swine herds.
Reference | Related Articles | Metrics