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Genome-wide analysis of RAD23 gene family and a functional characterization of AcRAD23D1 in drought resistance in Actinidia
Xiaoli Zhang, Daolin Ye, Xueling Wen, Xinling Liu, Lijin Lin, Xiulan Lü, Jin Wang, Qunxian Deng, Hui Xia, Dong Liang
2025, 24 (5): 1831-1843.   DOI: 10.1016/j.jia.2025.03.003
Abstract19)      PDF in ScienceDirect      

UBL-UBA protein functions as a shuttle factor in the 26S ubiquitin degradation pathway, playing a critical role in plant growth and development, and responding to various biotic and abiotic stresses.  Although RAD23, a type of UBL-UBA protein, has been extensively studied in several plants, there is currently no comprehensive analysis available for kiwifruit (Actinidia chinensis).  In this study, we identified six AcRAD23 genes in kiwifruit and further analyzed their phylogenetic relationships, gene structure, conserved motif composition and cis-acting element in the promoter.  Subcellular localization experiments revealed that all AcRAD23 were localized in the nucleus and the cell membranes.  Quantitative real-time PCR (qRT-PCR) analysis demonstrated differential expression patterns of these AcRAD23 genes across different tissues and under various stress conditions (drought, waterlogging, salt stress, etc.), with AcRAD23D1 showing the highest responsiveness to abiotic stress.  Additionally, we investigated the biological function of AcRAD23D1 using VIGS-mediated gene silencing methods under drought stress conditions.  Suppression of AcRAD23D1 expression resulted in reduced relative water content (RWC) but increased malondialdehyde (MDA) content and relative electrolyte leakage (REL) levels in D1-VIGS lines compared to control lines.  Furthermore, D1-VIGS lines exhibited a higher accumulation of reactive oxygen species (ROS) along with decreased superoxide dismutase (SOD) and peroxidase (POD) enzyme activities.  These findings suggest that AcRAD23D1 may play a positive role in regulating kiwifruit’s response to drought stress.  Our results provide new insights into the potential involvement of AcRAD23 under abiotic stress conditions while offering a theoretical foundation for understanding the molecular mechanisms underlying kiwifruit’s adaptation to stresses. 

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Host preferences of root-associated fungi and their responses to decadal nitrogen and fungicide applications in an alpine pasture ecosystem
Hao Xi, Jing Zeng, Jiayao Han, Yali Zhang, Jianbin Pan, Qi Zhang, Huyuan Feng, Yongjun Liu
2025, 24 (3): 885-899.   DOI: 10.1016/j.jia.2024.09.019
Abstract41)      PDF in ScienceDirect      

Plant roots interact with diverse fungi that are essential for maintaining the productivity and sustainability of pasture ecosystems, but how these root-associated fungi (RAF) differ between forage species and how they respond to nutrient enrichment and fungicide application are not well understood.  Here, we constructed an 11-year experiment involving fungicide application (with or without) nested within four levels of experimental nitrogen (N) addition treatments in an alpine pasture, and the RAF communities, root traits, tissue nutrients, and shoot biomass of two dominant forage species (Carex capillifolia and Elymus nutans) were analyzed.  The RAF community composition showed striking differences between the plant species and was strongly affected by both N addition level and fungicide applications.  Fungicide, but not N application, dramatically reduced the RAF richness of all functional guilds in both plant species, and fungicide also simplified the co-occurrence network of the RAF for Ccapillifolia.  The RAF community correlated strongly with root traits, whereas their relationships became weakened or even vanished at the level of the individual plant species.  The importance of RAF to plant nutrients and productivity varied between plant species, with significant contributions in Ccapillifolia but not in E. nutans.  This is the first report elucidating the long-term effect of fungicides on RAF in alpine pastures, and our findings emphasize the host-specific responses of RAF community structure and function to anthropogenic disturbances.


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On-site visual detection of Nipah virus combining a reverse transcription recombinase-aided amplification with a lateral-flow dipstick assay
Kaikai Jin, Junjie Zhao, Huanxin Chen, Zimo Zhang, Zengguo Cao, Zanheng Huang, Hao Li, Yongsai Liu, Lisi Ai, Yufei Liu, Changqi Fan, Yuanyuan Li, Pei Huang, Hualei Wang, Haili Zhang
2025, 24 (2): 790-794.   DOI: 10.1016/j.jia.2024.11.018
Abstract46)      PDF in ScienceDirect      
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Cytospora pyri promotes Erwinia amylovora virulence by providing metabolites and hyphae
Tong Shen, Mengdi Ye, Yeping Xu, Bohan Ding, Hongtao Li, Li Zhang, Jun Wang, Yanli Tian, Baishi Hu, Youfu Zhao
2024, 23 (9): 3045-3054.   DOI: 10.1016/j.jia.2024.05.020
Abstract124)      PDF in ScienceDirect      
Bacterial–fungal interactions are widespread in nature.  We observed that pear orchards affected by Cytospora pyri (formerly Valsa pyri) were often accompanied with Erwinia amylovora.  However, the relationship of the two pathogens was unclear.  The objective of this study was to determine whether the synergistic effect exists between Eamylovora and Cpyri.  We first analyzed the coexistence frequencies of Eamylovora and Cpyri in pear trees.  Virulence of the two pathogens, growth, physical interactions, amylovoran production, and expression of genes for amylovoran biosynthesis were conducted.  Our results showed that Eamylovora and Cpyri could coexist on the same lesion and caused much more severe disease.  We also found that Eamylovora could physically attach to Cpyri and the expression of amylovoran biosynthesis genes were up-regulated with fungal metabolite treatment.  These results indicate that Eamylovora and Cpyri can cooperatively interact, which provides Cpyri with an opportunity to promote bacterial dispersal and production of virulence factor in Eamylovora.


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A rapid and visual detection method for Crimean-Congo hemorrhagic fever virus by targeting S gene

Xingqi Liu, Zengguo Cao, Boyi Li, Pei Huang, Yujie Bai, Jingbo Huang, Zanheng Huang, Yuanyuan Zhang, Yuanyuan Li, Haili Zhang, Hualei Wang
2024, 23 (6): 2149-2153.   DOI: 10.1016/j.jia.2024.03.050
Abstract107)      PDF in ScienceDirect      
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Membrane vesicles derived from Streptococcus suis serotype 2 induce cell pyroptosis in endothelial cells via the NLRP3/Caspase-1/GSDMD pathway

Keda Shi, Yan Li, Minsheng Xu, Kunli Zhang, Hongchao Gou, Chunling Li, Shaolun Zhai
2024, 23 (4): 1338-1353.   DOI: 10.1016/j.jia.2023.09.022
Abstract180)      PDF in ScienceDirect      
Streptococcus suis serotype 2 (S. suis 2) is a zoonotic pathogen that clinically causes severe swine and human infections (such as meningitis, endocarditis, and septicemia).  In order to cause widespread diseases in different organs, S. suis 2 must colonize the host, break the blood barrier, and cause exaggerated inflammation.  In the last few years, most studies have focused on a single virulence factor and its influences on the host.  Membrane vesicles (MVs) can be actively secreted into the extracellular environment contributing to bacteria-host interactions.  Gram-negative bacteria-derived outer membrane vesicles (OMVs) were recently shown to activate host Caspase-11-mediated non-canonical inflammasome pathway via deliverance of OMV-bound lipopolysaccharide (LPS), causing host cell pyroptosis.  However, little is known about the effect of the MVs from S. suis 2 (Gram-positive bacteria without LPS) on cell pyroptosis.  Thus, we investigated the molecular mechanism by which S. suis 2 MVs participate in endothelial cell pyroptosis.  In this study, we used proteomics, electron scanning microscopy, fluorescence microscope, Western blotting, and bioassays, to investigate the MVs secreted by S. suis 2.  First, we demonstrated that S. suis 2 secreted MVs with an average diameter of 72.04 nm, and 200 proteins in MVs were identified.  Then, we showed that MVs were transported to cells via mainly dynamin-dependent endocytosis.  The S. suis 2 MVs activated NLRP3/Caspase-1/GSDMD canonical inflammasome signaling pathway, resulting in cell pyroptosis, but it did not activate the Caspase-4/-5 pathway.  More importantly, endothelial cells produce large amounts of reactive oxygen species (ROS) and lost their mitochondrial membrane potential under induction by S. suis 2 MVs.  The results in this study suggest for the first time that MVs from S. suis 2 were internalized by endothelial cells via mainly dynamin-dependent endocytosis and might promote NLRP3/Caspase-1/GSDMD pathway by mitochondrial damage, which produced mtDNA and ROS  under induction, leading to the pyroptosis of endothelial cells.
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Fine mapping and cloning of the sterility gene Bra2Ms in non-heading Chinese cabbage (Brassica rapa ssp. chinensis)

Liping Song, Xia Li, Liguang Tang, Chuying Yu, Bincai Wang, Changbin Gao, Yanfeng Xie, Xueli Zhang, Junliang Wang, Chufa Lin, Aihua Wang
2024, 23 (4): 1195-1204.   DOI: 10.1016/j.jia.2023.08.008
Abstract140)      PDF in ScienceDirect      
The application of a male-sterile line is an ideal approach for hybrid seed production in non-heading Chinese cabbage (Brassica rapa ssp. chinensis).  However, the molecular mechanisms underlying male sterility in B. rapa are still largely unclear.  We previously obtained the natural male sterile line WS24-3 of non-heading Chinese cabbage and located the male sterile locus, Bra2Ms, on the A2 chromosome.  Cytological observations revealed that the male sterility of WS24-3 resulted from disruption of the meiosis process during pollen formation.  Fine mapping of Bra2Ms delimited the locus within a physical distance of about 129 kb on the A2 chromosome of B. rapa.  The Bra039753 gene encodes a plant homeodomain (PHD)-finger protein and is considered a potential candidate gene for Bra2MsBra039753 was significantly downregulated in sterile line WS24-3 compared to the fertile line at the meiotic anther stage.  Sequence analysis of Bra039753 identified a 369 bp fragment insertion in the first exon in male sterile plants, which led to an amino acid insertion in the Bra039753 protein.  In addition, the 369 bp fragment insertion was found to cosegregate with the male sterility trait.  This study identified a novel locus related to male sterility in non-heading Chinese cabbage, and the molecular marker obtained in this study will be beneficial for the marker-assisted selection of excellent sterile lines in non-heading Chinese cabbage and other Brassica crops.
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Knockdown of the atypical protein kinase genes GhABC1K2-A05 and GhABC1K12-A07 make cotton more sensitive to salt and PEG stress
Caixiang Wang, Meili Li, Dingguo Zhang, Xueli Zhang, Juanjuan Liu, Junji Su
2024, 23 (10): 3370-3386.   DOI: 10.1016/j.jia.2024.01.035
Abstract59)      PDF in ScienceDirect      
Activity of bc1 complex kinase (ABC1K) is an atypical protein kinase (aPK) that plays a crucial role in plant mitochondrial and plastid stress responses, but little is known about the responses of ABC1Ks to stress in cotton (Gossypium spp.).  Here, we identified 40 ABC1Ks in upland cotton (Gossypium hirsutum L.) and found that the GhABC1Ks were unevenly distributed across 17 chromosomes.  The GhABC1K family members included 35 paralogous gene pairs and were expanded by segmental duplication.  The GhABC1K promoter sequences contained diverse cis-acting regulatory elements relevant to hormone or stress responses.  The qRT-PCR results revealed that most GhABC1Ks were upregulated by exposure to different stresses.  GhABC1K2-A05 and GhABC1K12-A07 expression levels were upregulated by at least three stress treatments.  These genes were further functionally characterized by virus-induced gene silencing (VIGS).  Compared with the controls, the GhABC1K2-A05- and GhABC1K12-A07-silenced cotton lines exhibited higher malondialdehyde (MDA) contents, lower catalase (CAT), peroxidase (POD) and superoxide dismutase (SOD) activities and reduced chlorophyll and soluble sugar contents under NaCl and PEG stress.  In addition, the expression levels of six stress marker genes (GhDREB2A, GhSOS1, GhCIPK6, GhSOS2, GhWRKY33, and GhRD29A) were significantly downregulated after stress in the GhABC1K2-A05- and GhABC1K12-A07-silenced lines.  The results indicate that knockdown of GhABC1K2-A05 and GhABC1K12-A07 make cotton more sensitive to salt and PEG stress.  These findings can provide valuable information for intensive studies of GhABC1Ks in the responses and resistance of cotton to abiotic stresses.


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The critical role of outside xylem hydraulic conductance in regulating stomatal conductance and water use efficiency in cotton across different planting densities
Yunrui Chen, Dayong Fan, Ziliang Li, Yujie Zhang, Yang He, Minzhi Chen, Wangfeng Zhang, Yali Zhang
DOI: 10.1016/j.jia.2024.11.012 Online: 12 November 2024
Abstract8)      PDF in ScienceDirect      

Hydraulic theory predicts a positive coupling between leaf hydraulic conductance (Kleaf) and stomatal conductance (gs); however, this theory has not been fully supported by observations, and the underlying mechanisms remain unclear.  Currently, subdividing Kleaf into leaf hydraulic conductance inside xylem (Kx) and outside xylem (Kox) offers a new perspective for elucidating the regulatory mechanism of Kleaf on gs.  Optimal planting density can enhance water use efficiency (WUE) by optimizing gs; however, the changes in leaf hydraulic properties during this process and its regulation of gs and WUE remain unclear.  We examined the relationships between Kx and Kox with gs, photosynthetic rate (AN), and WUE, and investigated the structural basis determining Kox in cotton under eight planting densities of 12, 18, 24, 36, 48, 60, 72, and 84 plant m-².  The results showed that as the increase of planting density, Kleaf and AN remained consistent while Kox and gs decreased significantly.  Kox was significantly influenced by leaf thickness and the volume fraction of inter-cellular air space.  Kleaf and Kx showed no correlation with AN or gs, but Kox exhibited a significant positive correlation with gs.  Furthermore, Kox is significantly negatively correlated with WUE.  These findings suggest that Kox modulates gs to reduce water loss while maintaining AN, thereby enhancing WUE in cotton under various planting densities.

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Paired nitrogen management for improving wheat yields while minimizing nitrogen losses
Xiaotian Mi, Wanyi Xie, Lei Fan, Tianli Zhang, Yaru Liu, Gang He
DOI: 10.1016/j.jia.2024.12.030 Online: 02 January 2025
Abstract5)      PDF in ScienceDirect      

Excellent nitrogen (N) management techniques can improve crop yields while mitigating reactive N (Nr) losses. The synergistic effects of applying paired N management techniques have important implications for designing excellent N management strategies, but the interaction effects remain poorly known. Here, a meta-analysis was conducted to quantify the effects of optimized N management techniques (optimized N application rate, optimized topdressing, and applying enhanced-efficiency fertilizers) on wheat yield, N use efficiency (NUE), and Nr losses, as well as the interactive effects of paired N management techniques (combining an optimized N rate with topdressing or enhanced-efficiency fertilizers). The results demonstrated that an optimized N fertilizer rate reduced Nr losses by 28–31% while the wheat yield declined by 2%; however, the wheat yield increased by 2% when the reduction of N fertilizer was less than 20%. The adoption of topdressing and enhanced-efficiency fertilizers significantly increased wheat yields by 4–8% and NUE by 8–14%, while reducing Nr losses by 28–40%, and high topdressing frequency and nitrification inhibitors showed stronger positive effects on wheat yield. Paired N management techniques increased wheat yields by 3–4% and NUE by 37–38%, with additive or synergistic effects; and they also reduced Nr losses by 5–66% but showed an antagonistic effect. Such non-additive interactions amplified the positive effects on wheat production, but the benefits in terms of environmental risk reduction were weakened. Overall, this study highlights the importance of synergistic effects in innovative N management to address the trade-off between crop yield and Nr losses.

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Plastic film mulching increases maize yields and mitigates NH3 emissions under climate change and N deposition
Kaiping Zhang, Yufei Li, Li Zhang, Pingxing Wan, Ning Chai, Yuling Li, Wucheng Zhao, Matthew Tom Harrison, Yakov Kuzyakov, Fengmin Li, Feng Zhang
DOI: 10.1016/j.jia.2025.02.047 Online: 25 February 2025
Abstract7)      PDF in ScienceDirect      

Plastic film mulching (PFM) increases crop yields in semi-arid regions by reducing water losses and increasing soil temperature, while crop production in these areas also serves as a significant source of ammonia (NH3) emissions.  The effects of PFM on NH3 emissions are nearly unknow because of interactions between larger N mineralization at higher temperature and film cover preventing NH3 diffusion.  Therefore, our objectives were to (1) evaluate the effects of PFM on NH3 emissions under field conditions, and (2) identify the maize yield and NH3 emissions under climate change and atmospheric N deposition using the DeNitrification-DeComposition (DNDC) model.  The experimental treatments included four treatments: (1) no plastic film mulching without N fertilization (control), (2) plastic film mulching without N fertilization (PFM), (3) N fertilization without plastic film mulching (N), and (4) plastic film mulching with N fertilization (PFM+N).  The PFM increased maize yields by 211% and yield stability across the years when combined with N fertilization.  PFM reduced NH3 emissions by 35% through three mechanisms: i) high water content under PFM saturates soil pores, hindering NH3 gas movement to atmosphere, ii) the hot and wet conditions under PFM accelerates nitrification rate, thus increasing pH buffering capacity during urea hydrolysis, and iii) the physical barrier created by PFM reduced NH3 exchange between soil and air.  Daily NH3 emissions increased with soil temperature, NH4+ content, and pH, but declined with soil moisture under N fertilization.  The NH3 emissions under PFM+N increased with NH4+ content.  The parameterised DNDC model simulated very well the yield and daily NH3 emissions. PFM+N increased yield and reduced NH3 emissions under the shared socioeconomic pathway (SSP) scenario and the N deposition.  Yield under PFM+N increased with increasing N deposition, while NH3 emissions under N deposition increased under the high radiative forcing scenario (SSP5-8.5).  Concluding, PFM increase yields and mitigate NH3 emissions, and it also has the potential to achieve similar benefits under future conditions.

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A candidate tick-borne encephalitis virus vaccine based on virus-like particles induces specific cellular and humoral immunity in mice
Mengyao Zhang, Hongli Jin, Cuicui Jiao, Yuanyuan Zhang, Yujie Bai, Zhiyuan Gong, Pei Huang, Haili Zhang, Yuanyuan Li, Hualei Wang
DOI: 10.1016/j.jia.2024.09.024 Online: 26 September 2024
Abstract40)      PDF in ScienceDirect      

Tick-borne encephalitis (TBE) is an important zoonotic viral disease transmitted by ticks. In recent decades, global climate change has increased human exposure to ticks, and mortality rates have gradually risen. Effective vaccines are essential for controlling TBE as specific antiviral treatment is unavailable. Vaccine candidates based on virus-like particles (VLPs) have previously been demonstrated to be efficient in eliciting excellent immune responses against influenza virus and SARS-CoV-2. Here, we constructed TBE virus (TBEV) VLPs containing the envelope and membrane proteins derived from the Far Eastern TBEV strain (WH2012) using an insect cell-baculovirus expression system. Induction of immune responses was investigated in mice following intramuscular injection with the TBEV VLPs vaccine candidates formulated of Poly(I:C) & Montanide ISA 201VG combination adjuvants. Mice produced memory T-cells and serum-specific IgG antibodies that averaged up to 1:104.6 and remained at 1:104 (mean) for 24 weeks after three immunizations. TBEV VLPs vaccine was able to provide long-term antibody protection against TBEV, making it a promising subunit vaccine candidate for this disease.

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CaBBX9, an interaction partner of autophagy regulated protein CaATG8c, negatively regulates heat tolerance of pepper
Li Zhang, Yuling Guo, Sitian Wang, Zhenze Wang, Qiaomin Yang, Ying Li, Yue Zhao, Haiyan Li, Lijun Cao, Minghui Lu
DOI: 10.1016/j.jia.2025.03.022 Online: 31 March 2025
Abstract8)      PDF in ScienceDirect      

In order to explore the molecular mechanisms underlying the contribution of autophagy to pepper’s heat tolerance, in previous study, we identified the zinc-finger protein B-BOX 9/CONSTANS-LIKE 13 (CaBBX9/CaCOL13) as an interaction partner of Autophagy regulated protein (ATG) CaATG8c, one of the core components in autophagy. However, the involvements of CaBBX9 in both autophagy and heat tolerance remain unclear. In this study, we further confirmed the interaction between CaBBX9 with CaATG8c, and defined the interaction regions of CaBBX9 are CONSTANS, CONSTANS-Like and TOC1 (CCT) domain and the fragment region. The expression of CaBBX9 can be induced by heat treatment. CaBBX9 is co-localized with CaATG8c in the nucleus and exhibits a transcriptional activity. When the expression of CaBBX9 is silenced, the heat-tolerance of pepper is enhanced, shown by the decrement of MDA content, H2O2, dead cells, and relative electrolyte leakage, and the increment of chlorophyll content and expression level of heat stress related genes. Overexpression of CaBBX9 in tomatoes displays the opposite effects. Taken together, our study demonstrates that CaBBX9 negatively regulates the heat-tolerance of peppers by exacerbating oxidative damage and inhibiting the expression of heat related genes. Our findings provide a new clue for guiding crop breeding for tolerance to adverse environment.

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