Journals
  Publication Years
  Keywords
Search within results Open Search
Please wait a minute...
For Selected: Toggle Thumbnails
Inversion tillage with straw incorporation affects the patterns of soil microbial co-occurrence and multi-nutrient cycling in a Hapli-Udic Cambisol
CHEN Xu, HAN Xiao-zeng, WANG Xiao-hui, GUO Zhen-xi, YAN Jun, LU Xin-chun, ZOU Wen-xiu
2023, 22 (5): 1546-1559.   DOI: 10.1016/j.jia.2022.12.011
Abstract188)      PDF in ScienceDirect      
Inversion tillage with straw amendment is widely applied in northeastern China, and it can substantially increase the storage of carbon and improve multiple subsoil functions. Soil microorganisms are believed to be the key to this process, but research into their role in subsoil amelioration is limited. Therefore, a field experiment was conducted in 2018 in a region in northeastern China with Hapli-Udic Cambisol using four treatments: conventional tillage (CT, tillage to a depth of 15 cm with no straw incorporation), straw incorporation with conventional tillage (SCT, tillage to a depth of 15 cm), inversion tillage (IT, tillage to a depth of 35 cm) and straw incorporation with inversion tillage (SIT, tillage to a depth of 35 cm). The soils were managed by inversion to a depth of 15 or 35 cm every year after harvest. The results indicated that SIT improved soil multi-nutrient cycling variables and increased the availability of key nutrients such as soil organic carbon, total nitrogen, available nitrogen, available phosphorus and available potassium in both the topsoil and subsoil. In contrast to CT and SCT, SIT created a looser microbial network structure but with highly centralized clusters by reducing the topological properties of average connectivity and node number, and by increasing the average path length and the modularity. A Random Forest analysis found that the average path length and the clustering coefficient were the main determinants of soil multi-nutrient cycling. These findings suggested that SIT can be an effective option for improving soil multi-nutrient cycling and the structure of microbial networks, and they provide crucial information about the microbial strategies that drive the decomposition of straw in Hapli-Udic Cambisol.
Reference | Related Articles | Metrics
Identification, evolution, expression and protein interaction analysis of genes encoding B-box zinc-finger proteins in maize
XU Xiao-hui, LI Wen-lan, YANG Shu-ke, ZHU Xiang-zhen, SUN Hong-wei, LI Fan, LU Xing-bo, CUI Jin-jie
2023, 22 (2): 371-388.   DOI: 10.1016/j.jia.2022.08.091
Abstract526)      PDF in ScienceDirect      

The B-box (BBX) family of proteins consists of zinc-finger transcription factors with one or two highly conserved B-box motifs at their N-termini.  BBX proteins play crucial roles in various aspects of plant growth and development, including seedling photomorphogenesis, shade avoidance, flowering time, and biotic and abiotic stress responses.  Previous studies have identified many different BBXs from several plant species, although the BBX family members in maize are largely unknown.  Genome-wide identification and comprehensive analysis of maize BBX (ZmBBX) expression and interaction networks would therefore provide valuable information for understanding their functions.  In this study, 36 maize BBXs in three major clades were identified.  The ZmBBXs within a given clade were found to share similar domains, motifs, and genomic structures.  Gene duplication analyses revealed that the expansion of BBX proteins in maize has mainly occurred by segmental duplication.  The expression levels of ZmBBXs were analyzed in various organs and tissues, and under different abiotic stress conditions.  Protein–protein interaction networks of ZmBBXs were established using bioinformatic tools and verified by bimolecular fluorescence complementation (BiFC) assays.  Our findings can facilitate a greater understanding of the complexity of the ZmBBX family and provide novel clues for unravelling ZmBBX protein functions

Reference | Related Articles | Metrics
Combining simplified DNA extraction technology and recombinase polymerase amplification assay for rapid and equipment-free detection of citrus pathogen Phytophthora parasitica
CHEN Wei-yu, YU Jia, XU Heng, LU Xin-yu, DAI Ting-ting, TIAN Yue-e, SHEN Dan-yu, DOU Dao-long
2021, 20 (10): 2696-2705.   DOI: 10.1016/S2095-3119(20)63459-1
Abstract125)      PDF in ScienceDirect      
Foot and root rot caused by Phytophthora parasitica is a substantial threat to citrus cultivation, affecting both yield and quality.  Thus, rapid and accurate detection of P. parasitica plays an important role in disease management.  The aim of this study was to develop a simple diagnostic method to detect P. parasitica infection by combining recombinase polymerase amplification and lateral flow strips (LF-RPA).  To establish the LF-RPA assay of P. parasitica, the primers and probe designed based on the Ypt1 gene were tested for specificity to P. parasitica, which showed no cross-reactivity with DNAs of other related oomycete species.  The LF-RPA assay detected the amount of genomic DNA of P. parasitica which was as low as 1 pg.  To make the LF-RPA assay useful in low-resource settings, four simplified DNA extraction methods were compared, after which the LF-RPA assay was applied, with no specialized equipment, to analyze a diverse range of citrus tissues by using a simplified PEG-NaOH method for DNA extraction.  This method was successful in detecting P. parasitica in infected plant samples within 30 min.  Combining the LF-RPA assay and a simplified DNA extraction method could be a potential  detection test for P. parasitica, especially in areas with limited resources.
Reference | Related Articles | Metrics
Identification and gene mapping of the starch accumulation and premature leaf senescence mutant ossac4 in rice
ZHU Mao-di, CHEN Xin-long, ZHU Xiao-yan, XING Ya-di, DU Dan, ZHANG Ying-ying, LIU Ming-ming, ZHANG Qiu-li, LU Xin, PENG Sha-sha, HE Guang-hua, ZHANG Tian-quan
2020, 19 (9): 2150-2164.   DOI: 10.1016/S2095-3119(19)62814-5
Abstract140)      PDF in ScienceDirect      
The rice mutant ossac4 (starch accumulating 4) was raised from seeds of the rice (Oryza sativa L.) indica maintainer line Xinong 1B treated with ethyl methanesulfonate.  The distal and medial portions of the second leaf displayed premature senescence in the ossac4 mutant at the four-leaf stage.  Physiological and biochemical analysis, and cytological examination revealed that the ossac4 mutant exhibited the premature leaf senescence phenotype.  At the four-leaf stage, the leaves of the ossac4 mutant exhibited significantly increased contents of starch compared with those of the wild type (WT).  Quantitative real-time PCR analysis showed that the expression levels of photosynthesis-associated genes were down-regulated and the expression levels of glucose metabolism-associated genes were abnormal.  Genetic analysis indicated that the ossac4 mutation was controlled by a single recessive nuclear gene.  The OsSAC4 gene was localized to a 322.7-kb interval between the simple-sequence repeat marker XYH11-90 and the single-nucleotide polymorphism marker SNP5300 on chromosome 11.  The target interval contained 20 annotated genes.  The present results demonstrated that ossac4 represents a novel starch accumulation and premature leaf senescence mutant, and lays the foundation for cloning and functional analysis of OsSAC4.
Reference | Related Articles | Metrics
Soil macroaggregates and organic-matter content regulate microbial communities and enzymatic activity in a Chinese Mollisol
CHEN Xu, HAN Xiao-zeng, YOU Meng-yang, YAN Jun, LU Xin-chun, William R. Horwath, ZOU Wen-xiu
2019, 18 (11): 2605-2618.   DOI: 10.1016/S2095-3119(19)62759-0
Abstract126)      PDF in ScienceDirect      
The formation and turnover of macroaggregates are critical processes influencing the dynamics and stabilization of soil organic carbon (SOC).  Soil aggregate size distribution is directly related to the makeup and activity of microbial communities.  We incubated soils managed for >30 years as restored grassland (GL), farmland (FL) and bare fallow (BF) for 60 days using both intact and reduced aggregate size distributions (intact aggregate distribution (IAD)<6 mm; reduced aggregate distribution (RAD)<1 mm), in treatments with added glucose, alanine or inorganic N, to reveal activity and microbial community structure as a function of aggregate size and makeup.  Over a 60-day incubation period, the highest phospholipid fatty acid (PLFA) abundance was on day 7 for bacteria and fungi, on day 15 for actinomycete.  The majority of the variation in enzymatic activities was likely related to PLFA abundance.  GL had higher microbial abundance and enzyme activity.  Mechanically reducing macroaggregates (>0.25 mm) by 34.7% in GL soil with no substrate additions increased the abundance of PLFAs (average increase of 15.7%) and activities of β-glucosidase (increase of 17.4%) and N-acetyl-β-glucosaminidase (increase of 7.6%).  The addition of C substrates increased PLFA abundance in FL and BF by averages of 18.8 and 33.4%, respectively, but not in GL soil.  The results show that the effect of habitat destruction on microorganisms depends on the soil aggregates, due to a release of bioavailable C, and the addition of substrates for soils with limited nutrient availability.  The protection of SOC is promoted by larger size soil aggregate structures that are important to different aggregate size classes in affecting soil C stabilization and microbial community structure and activity. 
Reference | Related Articles | Metrics
Phagocytic Uptake of Nosema bombycis (Microsporidia) Spores by Insect Cell Lines
CAI Shun-feng, LU Xing-meng, QIU Hai-hong, LI Ming-qian, FENG Zhen-zhen
2012, 12 (8): 1321-1326.   DOI: 10.1016/S1671-2927(00)8661
Abstract1379)      PDF in ScienceDirect      
Microsporidia are highly specialized obligate intracellular parasites that can infect a wide variety of animals ranging from protists to mammals. The classical concept of the parasite invasion into a host cell involves its polar tube acting as a needle-syringe system. However, recent studies show microsporidian spores can also gain access to host cells by phagocytosis. The present study investigated the phagocytic uptake process of causative agent of the pebrine disease, Nosema bombycis, in several insect cell lines. We observed KOH-treated spores and cold-storaged spores can be easily uptaken by all the studied cell types 4 h post inoculation. In contrast, large numbers of freshly recovered spores remained in the culture medium. To further investigate the intracellular fates of KOH-treated spores and cold-storaged spores, electron and fluorescence microscopy were performed. No intracellular germination or subsequent parasite development were observed. Intracellular spores can be detected in host cells by polyclonal antibody 7 d post inoculation, suggesting phagocytized N. bombycis could not be digested by these non-professional phagocytes. Our results suggest that, phagocytic uptake of N. bombycis spores might represent a defense mechanism of the host cells and the intact spore wall barrier enable freshly recovered spores to keep resistance to this mechanism.
Reference | Related Articles | Metrics