Soil microorganisms play important roles in nitrogen transformation.  The aim of this study was to characterize changes in the activity of nitrogen transformation enzymes and the abundance of nitrogen function genes in rhizosphere soil aerated using three different methods (continuous flooding (CF), continuous flooding and aeration (CFA), and alternate wetting and drying (AWD)).  The abundances of amoA ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB), nirS, nirK, and nifH genes, and the activities of urease, protease, ammonia oxidase, nitrate reductase, and nitrite reductase were measured at the tillering (S1), heading (S2), and ripening (S3) stages.  We analyzed the relationships of the aforementioned microbial activity indices, in addition to soil microbial biomass carbon (MBC) and soil microbial biomass nitrogen (MBN), with the concentration of soil nitrate and ammonium nitrogen.  The abundance of nitrogen function genes and the activities of nitrogen invertase in rice rhizosphere soil were higher at S2 compared with S1 and S3 in all treatments.  AWD and CFA increased the abundance of amoA and nifH genes, and the activities of urease, protease, and ammonia oxidase, and decreased the abundance of nirS and nirK genes and the activities of nitrate reductase and nitrite reductase, with the effect of AWD being particularly strong.  During the entire growth period, the mean abundances of the AOA amoA, AOB amoA, and nifH genes were 2.9, 5.8, and 3.0 higher in the AWD treatment than in the CF treatment, respectively, and the activities of urease, protease, and ammonia oxidase were 1.1, 0.5, and 0.7 higher in the AWD treatment than in the CF treatment, respectively.  The abundances of the nirS and nirK genes, and the activities of nitrate reductase and nitrite reductase were 73.6, 84.8, 10.3 and 36.5% lower in the AWD treatment than in the CF treatment, respectively.  The abundances of the AOA amoA, AOB amoA, and nifH genes were significantly and positively correlated with the activities of urease, protease, and ammonia oxidase, and the abundances of the nirS and nirK genes were significantly positively correlated with the activities of nitrate reductase.  All the above indicators were positively correlated with soil MBC and MBN.  In sum, microbial activity related to nitrogen transformation in rice rhizosphere soil was highest at S2.  Aeration can effectively increase the activity of most nitrogen-converting microorganisms and MBN, and thus promote soil nitrogen transformation. 

Effects of the heavy metal copper (Cu), the metalloid arsenic (As), and the antibiotic oxytetracycline (OTC) on bacterial community structure and diversity during cow and pig manure composting were investigated.  Eight treatments were applied, four to each manure type, namely cow manure with: (1) no additives (control), (2) addition of heavy metal and metalloid, (3) addition of OTC and (4) addition of OTC with heavy metal and metalloid; and pig manure with: (5) no additives (control), (6) addition of heavy metal and metalloid, (7) addition of OTC and (8) addition of OTC with heavy metal and metalloid.  After 35 days of composting, according to the alpha diversity indices, the combination treatment (OTC with heavy metal and metalloid) in pig manure was less harmful to microbial diversity than the control or heavy metal and metalloid treatments.  In cow manure, the treatment with heavy metal and metalloid was the most harmful to the microbial community, followed by the combination and OTC treatments.  The OTC and combination treatments had negative effects on the relative abundance of microbes in cow manure composts.  The dominant phyla in both manure composts included Actinobacteria, Bacteroidetes, Firmicutes, and Proteobacteria.  The microbial diversity relative abundance transformation was dependent on the composting time.  Redundancy analysis (RDA) revealed that environmental parameters had the most influence on the bacterial communities.  In conclusion, the composting process is the most sustainable technology for reducing heavy metal and metalloid impacts and antibiotic contamination in cow and pig manure.  The physicochemical property variations in the manures had a significant effect on the microbial community during the composting process.  This study provides an improved understanding of bacterial community composition and its changes during the composting process. 

    Organic pollutants, such as polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans (PCDD/Fs), polychlorinated biphenyls (PCBs), antibiotics, herbicides, and bisphenol A (BPA), are commonly found in agricultural environments. They are released into the environment as a result of their use for human health purposes and farm management activities, and are often discharged as waste-water effluents. Most of these organic pollutants are taken up by plants through roots and leaves, and when they enter the tissue, they cause serious damage to the plants. Although the toxicity of organic pollutants to plants, especially to plant cells, has been intensively studied, a systematic review of these studies is lacking. Here we review researches on the toxicity of organic pollutants, their uptake, and translocation in plants. Our objective is to assemble existing knowledge concerning the interaction of organic pollutants with plants, which should be useful for the development of plant-based systems for removing pollutants from aquatic and agricultural environments.

    In this study the transfer characteristics of mercury (Hg) from a wide range of Chinese soils to corn grain (cultivar Zhengdan 958) were investigated. Prediction models were developed for determining the Hg bioconcentration factor (BCF) of Zhengdan 958 from soil, including the soil properties, such as pH, organic matter (OM) concentration, cation exchange capacity (CEC), total nitrogen concentration (TN), total phosphorus concentration (TP), total potassium concentration (TK), and total Hg concentration (THg), using multiple stepwise regression analysis. These prediction models were applied to other non-model corn cultivars using a cross-species extrapolation approach. The results indicated that the soil pH was the most important factor associated with the transfer of Hg from soil to corn grain. Hg bioaccumulation in corn grain increased with the decreasing pH. No significant differences were found between two prediction models derived from different rates of Hg applied to the soil as HgCl₂. The prediction models established in this study can be applied to other non-model corn cultivars and are useful for predicting Hg bioconcentration in corn grain and assessing the ecological risk of Hg in different soils.

The irrigation method used in winter wheat fields affects micro-environment factors, such as relative humidity (RH) within canopy, soil temperature, topsoil bulk density, soil matric potential, and soil nutrients, and these changes may affect plant root growth. An experiment was carried out to explore the effects of irrigation method on micro-environments and root distribution in a winter wheat field in the 2007–2008 and 2008–2009 growing seasons. The results showed that border irrigation (BI), sprinkler irrigation (SI), and surface drip irrigation (SDI) had no significant effects on soil temperature. Topsoil bulk density, RH within the canopy, soil available N distribution, and soil matric potential were significantly affected by the three treatments. The change in soil matric potential was the key reason for the altered root profile distribution patterns. Additionally, more fine roots were produced in the BI treatment when soil water content was low and topsoil bulk density was high. Root growth was most stimulated in the top soil layers and inhibited in the deep layers in the SDI treatment, followed by SI and BI, which was due to the different water application frequencies. As a result, the root profile distribution differed, depending on the irrigation method used. The root distribution pattern changes could be described by the power level variation in the exponential function. A good knowledge of root distribution patterns is important when attempting to model water and nutrient movements and when studying soil-plant interactions.

The essential and toxic element concentrations in buckwheat were analyzed by inductively coupled plasma optical emission spectrometer (ICP-OES). The concentration data were subjected to common chemometrics analyses, including correlation analysis (CA), principal component analysis (PCA) and hierarchical cluster analysis (HCA), to gain better understanding of the differences among the tested samples. Our results indicated that the essential and toxic element concentrations were not different between Fagopyrum tataricum (L.) Gaertn and F. esculentum Moench. The element concentrations varied among buckwheat samples from different sources. Commercial tartary buckwheat tea contained several essential elements, thus, could be used as the source of essential elements. The detection of toxic heavy metals in commercial tartary buckwheat tea suggested that safety issue of such buckwheat products should be seriously concerned. Our results also revealed that the place of origin and the processing protocol of tartary buckwheat affected the element concentrations of the commercial form. The implications to the quality control and safety evaluation of buckwheat were extensively discussed.

Understanding the relationship between the timing of N fertilizer applications and crop primary production is crucial for achieving high yield and N use efficiency in agriculture. This study investigated the effects of starting-N plus topdressing N applications (as compared to the common practice of all basal application) on soybean photosynthetic capacity under different planting densities. A field experiment was conducted in two growing seasons (2011 and 2012), and the soybean (Glycine max L. Merrill) cultivar was Dongnong 52, three planting densities (20, 25 and 30 plants m-2), and four N fertilizer application patterns (all N fertilizer of 6 g N m-2 as basal fertilizer, all N fertilizer as topdressing at beginning pod stage (R3), 1.8 g N m-2 as basal fertilizer and 4.2 g N m-2 as topdressing at stage R3 and full pod stage (R4), respectively). The results indicated that under the same planting density, compared to applying all N as basal fertilizer, the application of starter-N plus topdressing N substantially reduced the rate of pod abscission, and enhanced leaf area index (LAI) significantly at beginning seed stage (R5) (P<0.05), net assimilation rate (NAR) during stages R4-full seed stage (R6) (P<0.05), contribution rate of post-seed filling assimilate to seed (CPA) (P<0.05), and yield (P<0.05). Applying topdressing N at stage R4 resulted in higher net primary production and yield than applying topdressing N at stage R3. When applying starter-N plus topdressing N at planting density of 25 plants m-2, LAI after stage R5 and NAR after stage R4 were increased by 5.92-16.3% (P<0.05) and 13.7-26.6% (P<0.05) with the planting density of 20 plants m-2, respectively, and yield was 8.46-14.0% (P<0.05) higher than that under 20 plants m-2. When planting density increased to 30 plants m-2, only LAI during stages R4-R5 and NAR during stages R4-R5 increased by applying starter-N plus topdressing N, while the other indexes declined. Overall, results of this study demonstrated that applying starter-N plus topdressing N could significantly enhance soybean photosynthetic capacity after stage R5 at planting density of 25 plants m-2.