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Ensiling vine tea (Ampelopsis grossedentata) residue with Lactobacillus plantarum inoculant as an animal unconventional fodder
WANG Yuan, ZHOU Hong-zhang, GAO Yu, WANG Ning-wei, LIU Han, YANG Fu-yu, NI Kui-kui
2023, 22 (4): 1172-1183.   DOI: 10.1016/j.jia.2022.10.001
Abstract221)      PDF in ScienceDirect      

The study aimed to evaluate the application of silage fermentation in storing vine tea residue.  Dynamic of fermentation-related product, chemical component and bacterial community of silage with or without Lactobacillus plantarum F1 inoculant were analyzed.  The results showed that F1 treatment had a significant (P<0.05) impact on the lactic acid and ammoniacal nitrogen concentrations and pH value.  Total phenols were well preserved in both treatments.  After 30 days of ensiling, Lplantarum occupied the majority of Lactobacillus genus (more than 95%) in all silage samples.  Spearman revealed a positive (P<0.01) correlation between lactic acid content and Lactobacillus.  Overall, ensiling vine tea residue with Lplantarum can effectively preserve the nutritional attributes and total phenols, which offers a new insight into utilizing vine tea residue.

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Dek219 encodes the DICER-LIKE1 protein that affects chromatin accessibility and kernel development in maize
XIE Si-di, TIAN Ran, ZHANG Jun-jie, LIU Han-mei, LI Yang-ping, HU Yu-feng, YU Guo-wu, HUANG Yu-bi, LIU Ying-hong
2023, 22 (10): 2961-2980.   DOI: 10.1016/j.jia.2023.02.024
Abstract369)      PDF in ScienceDirect      

Chromatin accessibility plays a vital role in gene transcriptional regulation.  However, the regulatory mechanism of chromatin accessibility, as well as its role in regulating crucial gene expression and kernel development in maize (Zea mays) are poorly understood.  In this study, we isolated a maize kernel mutant designated as defective kernel219 (dek219), which displays opaque endosperm and embryo abortion.  Dek219 encodes the DICER-LIKE1 (DCL1) protein, an essential enzyme in miRNA biogenesis.  Loss of function of Dek219 results in significant reductions in the expression levels of most miRNAs and histone genes.  Further research showed that the Heat shock transcription factor17 (Hsf17)-Zm00001d016571 module may be one of the factors affecting the expression of histone genes.  Assay results for transposase-accessible chromatin sequencing (ATAC-seq) indicated that the chromatin accessibility of dek219 is altered compared with that of wild type (WT), which may regulate the expression of crucial genes in kernel development.  By analyzing differentially expressed genes (DEGs) and differentially accessible chromatin regions (ACRs) between WT and dek219, we identified 119 candidate genes that are regulated by chromatin accessibility, including some reported to be crucial genes for kernel development.  Taken together, these results suggest that Dek219 affects chromatin accessibility and the expression of crucial genes that are required for maize kernel development

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Partial organic substitution weakens the negative effect of chemical fertilizer on soil micro-food webs
LIU Han-wen, ZHANG Xiao-ke, ZHANG Gui-zong, KOU Xin-chang, LIANG Wen-ju
2022, 21 (10): 3037-3050.   DOI: 10.1016/j.jia.2022.07.043
Abstract184)      PDF in ScienceDirect      
Soil biotic communities play vital roles in enhancing soil nutrient cycling and soil fertility.  Long-term excessive nitrogen (N) application is disadvantageous to the stability of soil food webs and affects arable soil health and sustainable utilization.  Proper organic substitution is essential to improve soil health and alleviate the disadvantages of excessive chemical fertilization.  However, the biological effects of various organic amendments on soil micro-food webs are poorly understood.  In order to explore the effects of various organic amendments including stover, biochar and manure on soil micro-food webs (microbial and nematode communities), a field plot experiment with maize having five treatments viz., 100% urea (100% N), 70% urea (70% N), 70% urea plus stover (Stover), 70% urea plus cattle manure (Manure) and 70% urea plus biochar (Biochar) was conducted.  Manure treatment increased the carbon (C) to N use efficiency of soil microbes, which contributed to the retention of soil C, while Biochar treatment elevated soil organic C (SOC) and soil pH.  Additionally, Biochar treatment mitigated the negative effects of soil acidification on the soil micro-food web and reduced the abundance of plant parasites.  Overall, the biological effect of organic amendments was distinguished from chemical fertilization (100% N and 70% N) through principal co-ordinates analysis.  Negative relationships among soil properties, microbial and nematode biomass in the 100% N treatment were diminished in treatments where chemical fertilizer was reduced.  The bottom-up effects on soil food webs were observed in organic substitution treatments.  In conclusion, organic amendments improved soil fertility by regulating soil microbial and nematode communities in the cropland ecosystem, alleviated the negative effects of chemical fertilizer on the micro-food webs and controlled the trophic cascades among soil biota.
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Genetic dissection of wheat uppermost-internode diameter and its association with agronomic traits in five recombinant inbred line populations at various field environments
LIU Hang, TANG Hua-ping, LUO Wei, MU Yang, JIANG Qian-tao, LIU Ya-xi, CHEN Guo-yue, WANG Ji-rui, ZHENG Zhi, QI Peng-fei, JIANG Yun-feng, CUI Fa, SONG Yin-ming, YAN Gui-jun, WEI Yuming, LAN Xiu-jin, ZHENG You-liang, MA Jian
2021, 20 (11): 2849-2861.   DOI: 10.1016/S2095-3119(20)63412-8
Abstract207)      PDF in ScienceDirect      
Uppermost-internode diameter (UID) is a key morphological trait associated with spike development and yield potential in wheat.  Our understanding of its genetic basis remains largely unknown.  Here, quantitative trait loci (QTLs) for UID with high-density genetic maps were identified in five wheat recombinant inbred line (RIL) populations.  In total, 25 QTLs for UID were detected in five RIL populations, and they were located on chromosomes 1A, 1D (3 QTL), 2B (2), 2D (3), 3B, 3D, 4A, 4B (3), 4D, 5A (5), 5B (2), 6B, and 7D.  Of them, five major and stable QTLs (QUid.sau-2CN-1D.1, QUid.sau-2SY-1D, QUid.sau-QZ-2D, QUid.sau-SC-3D, and QUid.sau-AS-4B) were identified from each of the five RIL populations in multiple environments.  QUid.sau-2CN-1D.1, QUid.sau-2SY-1D and QUid.sau-SC-3D are novel QTLs.  Kompetitive Allele Specific PCR (KASP) markers tightly linked to them were further investigated for developing near-isogenic lines (NILs) carrying the major loci.  Furthermore, candidate genes at these intervals harboring major and stable QTLs were predicted, and they were associated with plant development and water transportation in most cases.  Comparison of physical locations of the identified QTL on the ‘Chinese Spring’ reference genome showed that several QTLs including two major ones, QUid.sau-2CN-1D.1 and QUid.sau-2SY-1D, are likely allelic confirming their validity and effectiveness.  The significant relationships detected between UID and other agronomic traits and a proper UID were discussed.  Collectively, our results dissected the underlying genetic basis for UID in wheat and laid a foundation for further fine mapping and map-based cloning of these QTLs.
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A comprehensive analysis of the response of the fungal community structure to long-term continuous cropping in three typical upland crops
LIU Hang, PAN Feng-juan, HAN Xiao-zeng, SONG Feng-bin, ZHANG Zhi-ming, YAN Jun, XU Yan-li
2020, 19 (3): 866-880.   DOI: 10.1016/S2095-3119(19)62630-4
Abstract115)      PDF in ScienceDirect      
Certain agricultural management practices are known to affect the soil microbial community structure; however, knowledge of the response of the fungal community structure to the long-term continuous cropping and rotation of soybean, maize and wheat in the same agroecosystem is limited.  We assessed the fungal abundance, composition and diversity among soybean rotation, maize rotation and wheat rotation systems and among long-term continuous cropping systems of soybean, maize and wheat as the effect of crop types on fungal community structure.  We compared these fungal parameters of same crop between long-term crop rotation and continuous cropping systems as the effect of cropping systems on fungal community structure.  The fungal abundance and composition were measured by quantitative real-time PCR and Illumina MiSeq sequencing.  The results revealed that long-term continuous soybean cropping increased the soil fungal abundance compared with soybean rotation, and the fungal abundance was decreased in long-term continuous maize cropping compared with maize rotation.  The long-term continuous soybean cropping also exhibited increased soil fungal diversity.  The variation in the fungal community structure among the three crops was greater than that between long-term continuous cropping and rotation cropping.  Mortierella, Guehomyces and Alternaria were the most important contributors to the dissimilarity of the fungal communities between the continuous cropping and rotation cropping of soybean, maize and wheat.  There were 11 potential pathogen and 11 potential biocontrol fungi identified, and the relative abundance of most of the potential pathogenic fungi increased during the long-term continuous cropping of all three crops.  The relative abundance of most biocontrol fungi increased in long-term continuous soybean cropping but decreased in long-term continuous maize and wheat cropping.  Our results indicate that the response of the soil fungal community structure to long-term continuous cropping varies based upon crop types.
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Effects of meteorological factors on different grades of winter wheat growth in the Huang-Huai-Hai Plain, China
HUANG Qing, WANG Li-min, CHEN Zhong-xin, LIU Hang
2016, 15 (11): 2647-2657.   DOI: 10.1016/S2095-3119(16)61464-8
Abstract1275)      PDF in ScienceDirect      
    The sown area of winter wheat in the Huang-Huai-Hai (HHH) Plain accounts for over 65% of the total sown area of winter wheat in China. Thus, it is important to monitor the winter wheat growth condition and reveal the main factors that influence its dynamics. This study assessed the winter wheat growth condition based on remote sensing data, and investigated the correlations between different grades of winter wheat growth and major meteorological factors corresponding. First, winter wheat growth condition from sowing until maturity stage during 2011–2012 were assessed based on moderate-resolution imaging spectroradiometer (MODIS) normalized difference vegetation index (NDVI) time-series dataset. Next, correlation analysis and geographical information system (GIS) spatial analysis methods were used to analyze the lag correlations between different grades of winter wheat growth in each phenophase and the meteorological factors that corresponded to the phenophases. The results showed that the winter wheat growth conditions varied over time and space in the study area. Irrespective of the grades of winter wheat growth, the correlation coefficients between the winter wheat growth condition and the cumulative precipitation were higher than zero lag (synchronous precipitation) and one lag (pre-phenophase precipitation) based on the average values of seven phenophases. This showed that the cumulative precipitation during the entire growing season had a greater effect on winter wheat growth than the synchronous precipitation and the pre-phenophase precipitation. The effects of temperature on winter wheat growth varied according to different grades of winter wheat growth based on the average values of seven phenophases. Winter wheat with a better-than-average growth condition had a stronger correlation with synchronous temperature, winter wheat with a normal growth condition had a stronger correlation with the cumulative temperature, and winter wheat with a worse-than-average growth condition had a stronger correlation with the pre-phenophase temperature. This study may facilitate a better understanding of the quantitative correlations between different grades of crop growth and meteorological factors, and the adjustment of field management measures to ensure a high crop yield.
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