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Can soil organic carbon sequestration and the carbon management index be improved by changing the film mulching methods in the semiarid region?

Jialin Yang, Liangqi Ren, Nanhai Zhang, Enke Liu, Shikun Sun, Xiaolong Ren, Zhikuan Jia, Ting Wei, Peng Zhang
2024, 23 (5): 1541-1556.   DOI: 10.1016/j.jia.2023.05.011
Abstract143)      PDF in ScienceDirect      

Plastic film mulching has been widely used to increase maize yield in the semiarid area of China.  However, whether long-term plastic film mulching is conducive to agricultural sustainability in this region remains controversial.  A field experiment was initiated in 2013 with five different film mulching methods: (i) control method, flat planting without mulching (CK), (ii) flat planting with half film mulching (P), (iii) film mulching on ridges and planting in narrow furrows (S), (iv) full film mulching on double ridges (D), and (v) film mulching on ridges and planting in wide furrows (R).  The effects on soil organic carbon (SOC) content, storage, and fractions, and on the carbon management index (CMI) were evaluated after nine consecutive years of plastic film mulching.  The results showed that long-term plastic film mulching generally maintained the initial SOC level.  Compared with no mulching, plastic film mulching increased the average crop yield, biomass yield, and root biomass by 48.38, 35.06, and 37.32%, respectively, which led to the improvement of SOC sequestration.  Specifically, plastic film mulching significantly improved CMI, and increased the SOC content by 13.59%, SOC storage by 7.47% and easily oxidizable organic carbon (EOC) by 13.78% on average, but it reduced the other labile fractions.  SOC sequestration and CMI were improved by refining the plastic film mulching methods.  The S treatment had the best effect among the four mulching methods, so it can be used as a reasonable film mulching method for sustainable agricultural development in the semiarid area.

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Identification of candidate genes for early-maturity traits by combining BSA-seq and QTL mapping in upland cotton (Gossypium hirsutum L.)
Liang Ma, Tingli Hu, Meng Kang, Xiaokang Fu, Pengyun Chen, Fei Wei, Hongliang Jian, Xiaoyan Lü, Meng Zhang, Yonglin Yang
2024, 23 (10): 3472-3486.   DOI: 10.1016/j.jia.2024.04.024
Abstract97)      PDF in ScienceDirect      
Cotton breeding for the development of early-maturing varieties is an effective way to improve multiple cropping indexes and alleviate the conflict between grains and cotton in the cultivated fields in China.  In the present study, we aimed to identify upland cotton quantitative trait loci (QTLs) and candidate genes related to early-maturity traits, including whole growth period (WGP), flowering timing (FT), node of the first fruiting branch (NFFB), height of the node of the first fruiting branch (HNFFB), and plant height (PH).  An early-maturing variety, CCRI50, and a late-maturing variety, Guoxinmian 11, were crossed to obtain biparental populations.  These populations were used to map QTLs for the early-maturity traits for two years (2020 and 2021).  With BSA-seq analysis based on the data of population 2020, the candidate regions related to early maturity were found to be located on chromosome D03.  We then developed 22 polymorphic insertions or deletions (InDel) markers to further narrow down the candidate regions, resulting in the detection of five and four QTLs in the 2020 and 2021 populations, respectively.  According to the results of QTL mapping, two candidate regions (InDel_G286-InDel_G144 and InDel_G24-InDel_G43) were detected.  In these regions, three genes (GH_D03G0451, GH_D03G0649, and GH_D03G1180) have non-synonymous mutations in their exons and one gene (GH_D03G0450) has SNP variations in the upstream sequence between CCRI50 and Guoxinmian 11.  These four genes also showed dominant expression in the floral organs.  The expression levels of GH_D03G0451, GH_D03G0649 and GH_D03G1180 were significantly higher in CCRI50 than in Guoxinmian 11 during the bud differentiation stages, while GH_D03G0450 showed the opposite trend.  Further functional verification of GH_D03G0451 indicated that the GH_D03G0451-silenced plants showed a delay in the flowering time.  The results suggest that these are the candidate genes for cotton early maturity, and they may be used for breeding early-maturity cotton varieties.


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Two novel gene-specific markers at the Pik locus facilitate the application of rice blast resistant alleles in breeding
TIAN Da-gang, CHEN Zi-qiang, LIN Yan, CHEN Zai-jie, LUO Jia-mi, JI Ping-sheng, YANG Li-ming, WANG Zong-hua, WANG Feng
2021, 20 (6): 1554-1562.   DOI: 10.1016/S2095-3119(20)63272-5
Abstract153)      PDF in ScienceDirect      
Blast, a disease caused by Magnaporthe oryzae, is a major constraint for rice production worldwide.  Introgression of durable blast resistance genes into high-yielding rice cultivars has been considered a priority to control the disease.  The blast resistance Pik locus, located on chromosome 11, contains at least six important resistance genes, but these genes have not been widely employed in resistance breeding since existing markers hardly satisfy current breeding needs due to their limited scope of application.  In this study, two PCR-based markers, Pikp-Del and Pi1-In, were developed to target the specific InDel (insertion/deletion) of the Pik-p and Pi-1 genes, respectively.  The two markers precisely distinguished Pik-p, Pi-1, and the K-type alleles at the Pik locus, which is a necessary element for functional genes from rice varieties.  Results also revealed that only several old varieties contain the two genes, of which nearly half carry the K-type alleles.  Therefore, these identified varieties can serve as new gene sources for developing blast resistant rice.  The two newly developed markers will be highly useful for the use of Pik-p, Pi-1 and other resistance genes at the Pik locus in marker-assisted selection (MAS) breeding programs.
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Influence of lactic acid bacteria, cellulase, cellulase-producing Bacillus pumilus and their combinations on alfalfa silage quality
LI Dong-xia, NI Kui-kui, ZHANG Ying-chao, LIN Yan-li, YANG Fu-yu
2018, 17 (12): 2768-2782.   DOI: 10.1016/S2095-3119(18)62060-X
Abstract290)      PDF in ScienceDirect      
This study assessed the effects of lactic acid bacteria (LAB), cellulase, cellulase-producing Bacillus pumilus and their combinations on the fermentation characteristics, chemical composition, bacterial community and in vitro digestibility of alfalfa silage.  A completely randomized design involving a 8 (silage additives)×3 or 2 (silage days) factorial arrangement of treatments was adopted in the present study.  The 8 silage additive treatments were: untreated alfalfa (control); two commercial additives (GFJ and Chikuso-1); an originally selected LAB (Lactobacillus plantarum a214) isolated from alfalfa silage; a cellulase-producing Bacillus (CB) isolated from fresh alfalfa; cellulase (C); and the combined additives (a214+C and a214+CB).  Silage fermentation characteristics, chemical composition and microorganism populations were analysed after 30, 60 and 65 days (60 days followed by exposure to air for five additional days).  In vitro digestibility was analysed for 30 and 60 days.  Compared with the other treatments, selected LAB a214, a214 combined with either C or CB, and Chikuso-1 had the decreased (P<0.001) pH and increased (P<0.001) lactic acid concentrations during the ensiling process, and there were no differences (P>0.05) among them.  Fiber degradation was not significant (P≥0.054) in any C or CB treatments.  The a214 treatment showed the highest (P=0.009) in vitro digestibility of dry matter (595.0 g kg–1 DM) after ensiling and the highest abundance of Lactobacillus (69.42 and 79.81%, respectively) on days 60 and 65, compared to all of other treatments.  Overall, the silage quality of alfalfa was improved with the addition of a214, which indicates its potential as an alfalfa silage inoculant.
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An asymmetric membrane of polyimide 6FDA-BDAF and its pervaporation desulfurization for n-heptane/thiophene mixtures
YANG Xiang-dong, YE Hong, LI Yan-ting, LI Juan, LI Ji-ding, ZHAO Bing-qiang, LIN Yang-zheng
2015, 14 (12): 2529-2537.   DOI: 10.1016/S2095-3119(15)61213-8
Abstract1328)      PDF in ScienceDirect      
Polyimide (PI) is a type of important membrane material. A soluble polymer was synthesized from 4,4´-(hexafluoroisopropylidene) diphthalic anhydride (6FDA) and 2,2-bis[4-(4-aminophenoxy) phenyl] hexafluoropropane (BDAF) by the two-step polymerization method. The polymer was proved to be polyimide 6FDA-BDAF by the Fourier transform infrared (FT-IR), the 1H-NMR and 19F-NMR spectra. An asymmetric membrane was prepared with the synthesized polyimide 6FDA-BDAF, it was porous in the 50 μm height bulk and dense in a 3–5 μm height surface. The membrane was used to separate n-heptane/ thiophene mixtures by pervaporation with sulfur (S) contents from 50 to 900 μg g–1. The total flux was enlarged from 7.96 to 37.61 kg m–2 h–1 with temperature increasing from 50 to 90°C. The membrane’s enrichments factor for thiophene were about 3.13 and dependent on the experimental conditions. The experimental results demonstrated that polyimide 6FDA-BDAF would be a potential membrane material for desulfurization and controlled release of the S-containing fertilizer.
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Impact of Long-Term Atrazine Use on Groundwater Safety in Jilin Province, China
GENG Yue, MA Jing, JIA Ran, XUE Li-qin, TAO Chuan-jiang, LI Chong-jiu, MA Xiao-dong , LIN Yan
2013, 12 (2): 305-313.   DOI: 10.1016/S2095-3119(13)60229-4
Abstract1450)      PDF in ScienceDirect      
The long-lasting application of representative herbicide atrazine (ATR) has given rise to the accumulation of its residues in the groundwater. To investigate the impact of long-term ATR use on groundwater safety, the residues of ATR and its metabolites, desethylatrazine (DEA), deisopropylatrazine (DIA) and hydroxyatrazine (HA) were monitored in groundwater and top soil at the major corn growing region of Qian’an and Gongzhuling in Jilin Province, China. The residues of the target compounds were analyzed by UPLC-MS/MS. The limits of detection (LODs) of ATR, DEA, DIA, and HA were 0.5, 0.5, 5, and 0.5 ng L-1 in groundwater and 0.33, 0.33, 3.3, and 0.33 μg kg-1 in soil. The target compounds were found in 94% of groundwater samples and 100% of soil samples. The compounds detected most frequently in groundwater were ATR (89%), DEA (64%) and HA (17%), whereas in soil were ATR (97%), DEA (36%) and HA (97%). DIA was not detected in any determined groundwater and soil sample. Average residues were 106.8 ng L-1 for ATR, 0.9 ng L-1 for DEA and 0.3 ng L-1 for HA in groundwater, whereas 11.1 μg kg-1 for ATR, 0.4 μg kg-1 for DEA and 7.8 μg kg-1 for HA in soil. ATR residues detected in groundwater samples were below standards for drinking water quality (GB5749-2006, 2 μg L-1), while the total residues of ATR and its chloro-s-triazine metabolites (DEA and DIA) were below current WHO (World Health Organization) guideline value (GV, 0.1 mg L-1). In addition, concentrations of HA in groundwater were determined below current WHO GV (0.2 mg L-1). The results indicated that ATR is safe to be used in Jilin Province under the current application scheme. However, total residues of ATR and DEA were detected in nearly all wells, thus, it is necessary to pay attention on groundwater monitoring for ATR and its metabolites.
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Multiple chromosomal configurations and phylogenetic implications in Saccharum mitochondrial genomes
Guilong Lu, Chang Zhang, Qibin Wu, Tingting Sun, Shaolin Yang, Erya Wei, Junhui Li, Youxiong Que
DOI: 10.1016/j.jia.2025.02.018 Online: 18 February 2025
Abstract5)      PDF in ScienceDirect      

Mitochondria influence plant growth, fertility, and adaptation. Sugarcane (Saccharum hybrids) is the most important sugar and energy crop worldwide, and S. spontaneum and S. arundinaceum are excellent parental germplasm. However, few studies have been conducted on the mitochondrial genomes of sugarcane and related species. In this study, the mitogenomes of one S. arundinaceum, one S. spontaneum, and five sugarcane cultivars were assembled. The results showed that the sizes of these mitogenomes, encoding 33 protein-coding genes (PCGs), were between 445,578 and 533,662 bp, with a GC content of 43.43%-43.82%. The major structures of S. arundinaceum comprised three small rings, S. spontaneum had one ring and one linear structure, and sugarcane had two rings; there were multiple potential conformations due to repeat-mediated recombination. Furthermore, we developed an intron marker SAnad4i3 that can distinguish these species. Between 540 and 581 and from C to U RNA editing sites were identified in the PCGs, with six RNA editing sites were associated with the creation of start or stop codons in S. arundinaceum, and five sites each in S. spontaneum and the sugarcane hybrids were observed. Notably, 30-37 fragments homologous to chloroplast DNA were identified, with the highest number found in S. spontaneum. During evolution, these mitogenomes may have undergone multiple genomic reorganization and gene transfer events and lost eight PCGs. Collectively, this study reveals the genetic diversity and complexity of the Saccharum complex by providing a scientific basis for further germplasm identification and evolutionary research.

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