Adal A M, Binson E, Remedios L, Mahmoud S S. 2021. Expression of lavender AGAMOUS-like and SEPALLATA3-like genes promote early flowering and alter leaf morphology in Arabidopsis thaliana. Planta, 254, 54.

Alvarez J, Smyth D R. 1999. CRABS CLAW and SPATULA, two Arabidopsis genes that control carpel development in parallel with AGAMOUS. Development, 126, 2377–2386.

Bailey T L, Johnson J, Grant C E, Noble W S. 2015. The MEME suite. Nucleic Acids Research, 43, 39–49.

Borovsky Y, Raz A, Doron-Faigenboim A, Zemach H, Karavani E, Paran I. 2022. Pepper fruit elongation is controlled by Capsicum annuum ovate family protein 20. Frontiers in Plant Science, 12, 815589.

Bowman J L. 2000. The YABBY gene family and abaxial cell fate. Current Opinion in Plant Biology, 3, 17–22.

Bowman J L, Smyth D R. 1999. CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loop-helix domains. Development, 126, 2387–2396.

Castañeda L, Giménez E, Pineda B, García-Sogo B, Ortiz-Atienza A, Micol-Ponce R, Angosto T, Capel J, Moreno V, Yuste-Lisbona F J, Lozano R. 2022. Tomato CRABS CLAW paralogues interact with chromatin remodeling factors to mediate carpel development and floral determinacy. New Phytologist, 234, 1059–1074.

Che G, Pan Y, Liu X, Li M, Zhao J, Yan S, He Y, Wang Z, Cheng Z, Song W, Zhou Z, Wu T, Weng Y, Zhang X. 2023a. Natural variation in CRABS CLAW contributes to fruit length divergence in cucumber. The Plant Cell, 35, 738–755.

Che G, Song W, Zhang X. 2023b. Gene network associates with CsCRC regulating fruit elongation in cucumber. Vegetable Research, 3, 7.

Chen C, Chen H, Zhang Y, Thomas H R, Frank M H, He Y, Xia R. 2020. TBtools: An integrative toolkit developed for interactive analyses of big biological data. Molecular Plant, 13, 1194–1202.

Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou D X. 2007. The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiology, 144, 121–133.

Ding B, Li J, Gurung V, Lin Q, Sun X, Yuan Y. 2021. The leaf polarity factors SGS3 and YABBYs regulate style elongation through auxin signaling in Mimulus lewisii. New Phytologist, 232, 2191–2206.

Fernandez-Pozo N, Menda N, Edwards J D, Saha S, Tecle I Y, Strickler S R, Bombarely A, Fisher-York T, Pujar A, Foerster H, Yan A, Mueller L A. 2015. The Sol Genomics Network (SGN) - from genotype to phenotype to breeding. Nucleic Acids Research, 43, 1036–1041.

Gasteiger E. 2003. ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Research, 31, 3784–3788.

Goldshmidt A, Alvarez J P, Bowman J L, Eshed Y. 2008. Signals derived from YABBY gene activities in organ primordia regulate growth and partitioning of Arabidopsis shoot apical meristems. The Plant Cell, 20, 1217–1230.

Hao L, Zhang J, Shi S, Li P, Li D, Zhang T, Guo H. 2022. Identification and expression profiles of the YABBY transcription factors in wheat. PeerJ, 10, 12855.

He Q, Wu H, Zeng L, Yin C, Wang L, Tan Y, Lv W, Liao Z, Zheng X, Zhang S, Han Q, Wang D, Zhang Y, Xiong G, Wang Q. 2024. OsKANADI1 and OsYABBY5 regulate rice plant height by targeting GIBERELLIN 2-OXIDASE6. The Plant Cell, 37, koae276.

Honma T, Goto K. 2001. Complexes of MADS-box proteins are sufficient to convert leaves into floral organs. Nature, 409, 525–529.

Huang F, Xu G, Chi Y, Liu H, Xue Q, Zhao T, Gai J, Yu D. 2014. A soybean MADS-box protein modulates floral organ numbers, petal identity and sterility. BMC Plant Biology, 14, 89.

Kong L, Sun J, Jiang Z, Ren W, Wang Z, Zhang M, Liu X, Wang L, Ma W, Xu J. 2023. Identification and expression analysis of YABBY family genes in Platycodon grandiflorus. Plant Signaling & Behavior, 18, 2163069.

Lamesch P, Berardini T Z, Li D, Swarbreck D, Wilks C, Sasidharan R, Muller R, Dreher K, Alexander D L, Garcia-Hernandez M, Karthikeyan A S, Lee C H, Nelson W D, Ploetz L, Singh S, Wensel A, Huala E. 2012. The Arabidopsis Information Resource (TAIR): Improved gene annotation and new tools. Nucleic Acids Research, 40, 1202–1210.

Lescot M. 2002. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 30, 325–327.

Letunic I, Khedkar S, Bork P. 2021. SMART: Recent updates, new developments and status in 2020. Nucleic Acids Research, 49, 458–460.

Li T, Zhang M, Li M, Wang X, Xing S. 2023. Molecular characterization and expression analysis of YABBY genes in Chenopodium quinoa. Genes, 14, 2103.

Li Z, Li G, Cai M, Priyadarshani S V G N, Aslam M, Zhou Q, Huang X, Wang X, Liu Y, Qin Y. 2019. Genome-wide analysis of the YABBY transcription factor family in pineapple and functional identification of AcYABBY4 involvement in salt stress. International Journal of Molecular Sciences, 20, 5863.

Lin Z Y, Zhu G F, Lu C Q, Gao J, Li J, Xie Q, Wei Y L, Jin J P, Wang F L, Yang F X. 2023. Functional conservation and divergence of SEPALLATA-like genes in floral development in Cymbidium sinense. Frontiers in Plant Science, 14, 1209834.

Liu F, Yu H, Deng Y, Zheng J, Liu M, Ou L, Yang B, Dai X, Ma Y, Feng S, He S, Li X, Zhang Z, Chen W, Zhou S, Chen R, Liu M, Yang S, Wei R, Li H, et al. 2017. PepperHub, an informatics hub for the chili pepper research community. Molecular Plant, 10, 1129–1132.

Liu F, Zhao J, Sun H, Xiong C, Sun X, Wang X, Wang Z, Jarret R, Wang J, Tang B, Xu H, Hu B, Suo H, Yang B, Ou L, Li X, Zhou S, Yang S, Liu Z, Yuan F, et al. 2023. Genomes of cultivated and wild Capsicum species provide insights into pepper domestication and population differentiation. Nature Communication, 14, 5487.

Liu G, Li C, Yu H, Tao P, Yuan L, Ye J, Chen W, Wang Y, Ge P, Zhang J, Zhou G, Zheng W, Ye Z, Zhang Y. 2020. GREEN STRIPE, encoding methylated TOMATO AGAMOUS-LIKE 1, regulates chloroplast development and Chl synthesis in fruit. New Phytologist, 228, 302–317.

Lu S, Wang J, Chitsaz F, Derbyshire M K, Geer R C, Gonzales N R, Gwadz M, Hurwitz D I, Marchler G H, Song J S, Thanki N, Yamashita R A, Yang M, Zhang D, Zheng C, Lanczycki C J, Marchler-Bauer A. 2020. CDD/SPARCLE: the conserved domain database in 2020. Nucleic Acids Research, 48, 265–268.

Lu Y, Zhu H. 2022. The regulation of nutrient and flavor metabolism in tomato fruit. Vegetable Research, 2, 5.

Masiero S, Colombo L, Grini P E, Schnittger A, Kater M M. 2011. The emerging importance of type I MADS box transcription factors for plant reproduction. The Plant Cell, 23, 865–872.

Mistry J, Chuguransky S, Williams L, Qureshi M, Salazar G A, Sonnhammer E L L, Tosatto S C E, Paladin L, Raj S, Richardson L J, Finn R D, Bateman A. 2021. Pfam: The protein families database in 2021. Nucleic Acids Research, 49, 412–419.

Pelaz S, Ditta G S, Baumann E, Wisman E, Yanofsky M F. 2000. B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature, 405, 200–203.

Pelaz S, Gustafson-Brown C, Kohalmi S E, Crosby W L, Yanofsky M F. 2001. APETALA1 and SEPALLATA3 interact to promote flower development. The Plant Journal, 26, 385–394.

Robles P, Pelaz S. 2005. Flower and fruit development in Arabidopsis thaliana. International Journal of Developmental Biology, 49, 633–643.

Sakai H, Lee S S, Tanaka T, Numa H, Kim J, Kawahara Y, Wakimoto H, Yang C, Iwamoto M, Abe T, Yamada Y, Muto A, Inokuchi H, Ikemura T, Matsumoto T, Sasaki T, Itoh T. 2013. Rice annotation project database (RAP-DB): An Integrative and interactive database for rice genomics. Plant and Cell Physiology, 54, 6.

Sarojam R, Sappl P G, Goldshmidt A, Efroni I, Floyd S K, Eshed Y, Bowman J L. 2010. Differentiating Arabidopsis shoots from leaves by combined YABBY activities. The Plant Cell, 22, 2113–2130.

Sawa S, Watanabe K, Goto K, Kanaya E, Morita E H, Okada K. 1999. FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains. Genes & Development, 13, 1079–1088.

Shen H, Luo B, Ding Y, Xiao H, Chen G, Yang Z, Hu Z, Wu T. 2024. The YABBY transcription factor, SlYABBY2a, positively regulates fruit septum development and ripening in tomatoes. International Journal of Molecular Sciences, 25, 5206.

Siegfried K R, Eshed Y, Baum S F, Otsuga D, Drews G N, Bowman J L. 1999. Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Development, 126, 4117–4128.

Smaczniak C, Immink R G, Muiño J M, Blanvillain R, Busscher M, Busscher-Lange J, Dinh Q D, Liu S, Westphal A H, Boeren S, Parcy F, Xu L, Carles C C, Angenent G C, Kaufmann K. 2012a. Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development. Proceedings of the National Academy of Sciences of the United States of America, 109, 1560–1565.

Smaczniak C, Immink R G H, Angenent G C, Kaufmann K. 2012b. Developmental and evolutionary diversity of plant MADS-domain factors: Insights from recent studies. Development, 139, 3081–3098.

Song J, Shang L, Li C, Wang W, Wang X, Zhang C, Ai G, Ye J, Yang C, Li H, Hong Z, Larkin RM, Ye Z, Zhang J. 2022. Variation in the fruit development gene POINTED TIP regulates protuberance of tomato fruit tip. Nature Communication, 13, 5940.

Sun L, Wei Y Q, Wu K H, Yan J Y, Xu J N, Wu Y R, Li G X, Xu J M, Harberd N P, Ding Z J, Zheng S J. 2021. Restriction of iron loading into developing seeds by a YABBY transcription factor safeguards successful reproduction in Arabidopsis. Molecular Plant, 14, 1624–1639.

Tsaballa A, Pasentsis K, Darzentas N, Tsaftaris A S. 2011. Multiple evidence for the role of an Ovate-like gene in determining fruit shape in pepper. BMC Plant Biology, 11, 46.

Villanueva J M, Broadhvest J, Hauser B A, Meister R J, Schneitz K, Gasser C S. 1999. INNER NO OUTER regulates abaxial-adaxial patterning in Arabidopsis ovules. Genes & Development, 13, 3160–3169.

Vrebalov J, Pan I L, Arroyo A J M, McQuinn R, Chung M, Poole M, Rose J, Seymour G, Grandillo S, Giovannoni J, Irish V F. 2009. Fleshy fruit expansion and ripening are regulated by the tomato SHATTERPROOF gene TAGL1. The Plant Cell, 21, 3041–3062.

Wan H, Yuan W, Ruan M, Ye Q, Wang R, Li Z, Zhou G, Yao Z, Zhao J, Liu S, Yang Y. 2011. Identification of reference genes for reverse transcription quantitative real-time PCR normalization in pepper (Capsicum annuum L.). Biochemical and Biophysical Research Communications, 416, 24–30.

Wang Q, Reddy V A, Panicker D, Mao H, Kumar N, Rajan C, Venkatesh P N, Chua N, Sarojam R. 2016. Metabolic engineering of terpene biosynthesis in plants using a trichome-specific transcription factor MsYABBY5 from spearmint (Mentha spicata). Plant Biotechnology Journal, 14, 1619–1632.

Wang S, Wang K, Li Z, Li Y, He J, Li H, Wang B, Xin T, Tian H, Tian J, Zhang G, Li H, Huang S, Yang X. 2022. Architecture design of cucurbit crops for enhanced productivity by a natural allele. Nature Plants, 8, 1394–1407.

Wang W, Ma J, Liu H, Wang Z, Nan R, Zhong T, Sun M, Wang S, Yao Y, Sun F, Zhang C, Xi Y. 2024. Genome-wide analysis of the switchgrass YABBY family and functional characterization of PvYABBY14 in response to ABA and GA stress in Arabidopsis. BMC Plant Biology, 24, 114.

Weigel D, Meyerowitz E M. 1994. The ABCs of floral homeotic genes. Cell, 78, 203–209.

Wheeler T J, Eddy S R. 2013. nhmmer: DNA homology search with profile HMMs. Bioinformatics, 29, 2487–2489.

Wu J, Li P, Li M, Zhu D, Ma H, Xu H, Li S, Wei J, Bian X, Wang M, Lai Y, Peng Y, Li H, Rahman A, Wu S. 2024a. Heat stress impairs floral meristem termination and fruit development by affecting the BR-SlCRCa cascade in tomato. Plant Communications, 5,100790.

Wu J, Li P, Zhu D, Ma H, Li M, Lai Y, Peng Y, Li H, Li S, Wei J, Bian X, Rahman A, Wu S. 2024b. SlCRCa is a key D-class gene controlling ovule fate determination in tomato. Plant Biotechnology Journal, 22, 1966–1980.

Xiang L, Chen Y, Chen L, Fu X, Zhao K, Zhang J, Sun C. 2018. B and E MADS-box genes determine the perianth formation in Cymbidium goeringii Rchb.f. Physiologia Plantarum, 162, 353–369.

Yan S, Ning K, Wang Z, Liu X, Zhong Y, Ding L, Zi H, Cheng Z, Li X, Shan H, Lv Q, Luo L, Liu R, Yan L, Zhou Z, Lucas W J, Zhang X. 2020. CsIVP functions in vasculature development and downy mildew resistance in cucumber. PLoS Biology, 18, 3000671.

Yang T, He Y, Niu S, Zhang Y. 2022. A YABBY gene CRABS CLAW a (CRCa) negatively regulates flower and fruit sizes in tomato. Plant Science, 320, 111285.

Yu Y, Hu H, Voytas D F, Doust A N, Kellogg E A. 2023. The YABBY gene SHATTERING1 controls activation rather than patterning of the abscission zone in Setaria viridis. New Phytologist, 240, 846–862.

Zhang S, Tan F Q, Chung C H, Slavkovic F, Devani R S, Troadec C, Marcel F, Morin H, Camps C, Gomez Roldan M V, Benhamed M, Dogimont C, Boualem A, Bendahmane A. 2022. The control of carpel determinacy pathway leads to sex determination in cucurbits. Science, 378, 543–549.

Zhang T, Wu A, Hu X, Deng Q, Ma Z, Su L. 2023. Comprehensive study of rice YABBY gene family: evolution, expression and interacting proteins analysis. PeerJ, 11, 14783.

Zhang X, Ding L, Song A, Li S, Liu J, Zhao W, Jia D, Guan Y, Zhao K, Chen S, Jiang J, Chen F. 2022. DWARF AND ROBUST PLANT regulates plant height via modulating gibberellin biosynthesis in chrysanthemum. Plant Physiology, 190, 2484–2500.

Zhang Y, Zhang B, Yang T, Zhang J, Liu B, Zhan X, Liang Y. 2020. The GAMYB-like gene SlMYB33 mediates flowering and pollen development in tomato. Horticulture Research, 7, 133.

Zhao S P, Lu D, Yu T F, Ji Y J, Zheng W J, Zhang S X, Chai S C, Chen Z Y, Cui X Y. 2017. Genome-wide analysis of the YABBY family in soybean and functional identification of GmYABBY10 involvement in high salt and drought stresses. Plant Physiology and Biochemistry, 119, 132–146.

Zhao T, Ni Z, Dai Y, Yao Y, Nie X, Sun Q. 2006. Characterization and expression of 42 MADS-box genes in wheat (Triticum aestivum L.). Molecular Genetics and Genomics, 276, 334.

Zhou Z, Bi G, Zhou J M. 2018. Luciferase complementation assay for protein-protein interactions in plants. Current Protocols in Molecular Biology, 3, 42–50.

Zhu Q, Deng L, Chen J, Rodríguez GR, Sun C, Chang Z, Yang T, Zhai H, Jiang H, Topcu Y, Francis D, Hutton S, Sun L, Li CB, van der Knaap E, Li C. 2023. Redesigning the tomato fruit shape for mechanized production. Nature Plants, 9, 1659–1674.