Ahmad J N, Renaudin J, Eveillard S. 2014. Expression of defence genes in Stolbur phytoplasma infected tomatoes, and effect of defence stimulators on disease development. European Journal of Plant Pathology, 139, 39–51.
Borovsky Y, Mohan V, Shabtai S, Paran I. 2020. CaFT-LIKE is a flowering promoter in pepper and functions as florigen in tomato. Plant Science, 301, 110678.
Brown J C L, De Decker M M, Fieldes M A. 2008. A comparative analysis of developmental profiles for DNA methylation in 5-azacytidine-induced early-flowering flax lines and their control. Plant Science, 175, 217–225.
Cheng Y H, Peng X Y, Yu Y C, Sun Z Y, Han L. 2019. The effects of DNA methylation inhibition on flower development in the dioecious plant Salix viminalis. Forests, 10, 173.
Chong L, Xu R, Huang P, Guo P, Zhu M, Du H, Sun X, Ku L, Zhu J K, Zhu Y. 2022. The tomato OST1-VOZ1 module regulates drought-mediated flowering. The Plant Cell, 34, 2001–2018.
Fan H, Li T, Guan L, Li Z, Guo N, Cai Y, Lin Y. 2012. Effects of exogenous nitric oxide on antioxidation and DNA methylation of Dendrobium huoshanense grown under drought stress. Plant Cell, Tissue and Organ Culture (PCTOC), 109, 307–314.
Gupta K J, Kolbert Z, Durner J, Lindermayr C, Corpas F J, Brouquisse R, Barroso J B, Umbreen S, Palma J M, Hancock J T, Petrivalsky M, Wendehenne D, Loake G J. 2020. Regulating the regulator: Nitric oxide control of post-translational modifications. New Phytologist, 227, 1319–1325.
Hajihashemi S, Jahantigh O. 2023. Nitric oxide effect on growth, physiological and biochemical processes, flowering, and postharvest performance of Narcissus tazzeta. Journal of Plant Growth Regulation, 42, 892–907.
Han Y, Zhang C, Yang H, Jiao Y. 2014. Cytokinin pathway mediates APETALA1 function in the establishment of determinate floral meristems in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 111, 6840–6845.
He L, Huang H, Bradai M, Zhao C, You Y, Ma J, Zhao L, Lozano-Durán R, Zhu J K. 2022. DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development. Nature Communications, 13, 1335.
Healey A, Furtado A, Cooper T, Henry R J. 2014. Protocol: A simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species. Plant Methods, 10, 1–8.
Huang W, Xian Z, Hu G, Li Z. 2016. SlAGO4A, a core factor of RNA-directed DNA methylation (RdDM) pathway, plays an important role under salt and drought stress in tomato. Molecular Breeding, 36, 1–13.
Huang X, Zhang Y, Wang L, Dong X, Hu W, Jiang M, Chen G, An G, Xiong F, Wu Y. 2021. OsDOF11 affects nitrogen metabolism by sucrose transport signaling in rice (Oryza sativa L.). Frontiers in Plant Science, 12, 703034.
Inagaki S, Takahashi M, Takashima K, Oya S, Kakutani T. 2021. Chromatin-based mechanisms to coordinate convergent overlapping transcription. Nature Plants, 7, 295–302.
Jiang W, Yan X, Lu C, Xu X, Xu E, Chen D, Huang Y, Lv A, Shao Q. 2024. Morphological, physiological and biochemical changes and the effects of polyamines on the regulation of Anoectochilus roxburghii during flowering stage. [2023-11-2]. https://ssrn.com/abstract=4753292
Kenchanmane R, Sunil K. 2017. Utilizing MutS HOMOLOG 1 (MSH1) derived epigenetic variation in breeding for yield and stress adaptability. Ph D thesis, The University of Nebraska–Lincoln, USA.
Khairul-Anuar M A, Mazumdar P, Lum S, Harikrishna J A. 2021. Dendrobium hybrid flower number and pedicel curvature is influenced by the application of gibberellic acid and indole-3-acetic acid. Biology Bulletin, 48, 740–745.
Larrick J W, Mendelsohn A R. 2019. Regulation of S-nitrosylation in aging and senescence. Rejuvenation Research, 22, 171–174.
Li W G, Ma Y X, Zheng C K, Li G. 2022. Variations of cytosine methylation patterns between staminate and perfect flowers within andromonoecious Taihangia rupestris (Rosaceae) revealed by methylation-sensitive amplification polymorphism. Journal of Plant Growth Regulation, 41, 351–363.
Li Z, Tang M, Luo D, Kashif M H, Cao S, Zhang W, Hu Y, Huang Z, Yue J, Li R, Chen P. 2021. Integrated methylome and transcriptome analyses reveal the molecular mechanism by which DNA methylation regulates kenaf flowering. Frontiers in Plant Science, 12, 709030.
Lifschitz E, Eviatar T, Rozman A, Shalit A, Goldshmidt A, Amsellem Z, Alvarez J P, Eshed Y. 2006. The tomato FT ortholog triggers systemic signals that regulate growth and flowering and substitute for diverse environmental stimuli. Proceedings of the National Academy of Sciences of the United States of America, 103, 6398–6403.
Liu Y J, Li D, Gong J, Wang Y B, Chen Z B, Pang B S, Chen X C, Gao J G, Yang W B, Zhang F T, Tang Y M, Zhao C P, Gao S Q. 2021. Comparative transcriptome and DNA methylation analysis in temperature-sensitive genic male sterile wheat BS366. BMC Genomics, 22, 911.
Mattioli R, Falasca G, Sabatini S, Altamura MM, Costantino P, Trovato M. 2009. The proline biosynthetic genes P5CS1 and P5CS2 play overlapping roles in Arabidopsis flower transition but not in embryo development. Physiologia Plantarum, 137, 72–85.
Molinero-Rosales N, Latorre A, Jamilena M, Lozano R. 2004. SINGLE FLOWER TRUSS regulates the transition and maintenance of flowering in tomato. Planta, 218, 427–434.
Niedojadło K, Kupiecka M, Kołowerzo-Lubnau A, Lenartowski R, Niedojadło J, Bednarska-Kozakiewicz E. 2020. Dynamic distribution of ARGONAUTE1 (AGO1) and ARGONAUTE4 (AGO4) in Hyacinthus orientalis L. pollen grains and pollen tubes growing in vitro. Protoplasma, 257, 793–805.
Niu L, Yu J, Liao W, Xie J, Yu J, Lv J, Xiao X, Hu L, Wu Y. 2019. Proteomic investigation of S-nitrosylated proteins during NO-induced adventitious rooting of cucumber. International Journal of Molecular Sciences, 20, 5363.
Okuda K, Nakahara K, Ito A, Iijima Y, Nomura R, Kumar A, Fujikawa K, Adachi K, Shimada Y, Fujio S, Yamamoto R, Takasugi N, Onuma K, Osaki M, Okada F, Ukegawa T, Takeuchi Y, Yasui N, Yamashita A, Marusawa H, et al. 2023. Pivotal role for S-nitrosylation of DNA methyltransferase 3B in epigenetic regulation of tumorigenesis. Nature Communications, 14, 621.
Qi N, Hou X, Wang C, Li C, Huang D, Li Y, Wang N, Liao W. 2021. Methane-rich water induces bulblet formation of scale cuttings in Lilium davidii var. unicolor by regulating the signal transduction of phytohormones and their levels. Physiologia Plantarum, 172, 1919–1930.
Rahneshan Z, Nasibi F, Moghadam A A. 2018. Effects of salinity stress on some growth, physiological, biochemical parameters and nutrients in two pistachio (Pistacia vera L.) rootstocks. Journal of Plant Interactions, 13, 73–82.
Rai K K, Rai N, Rai S P. 2018. Salicylic acid and nitric oxide alleviate high temperature induced oxidative damage in Lablab purpureus L. plants by regulating bio-physical processes and DNA methylation. Plant Physiology and Biochemistry, 128, 72–88.
Rasool G, Buchholz G, Yasmin T, Shabbir G, Abbasi N A, Malik S I. 2021. Overexpression of SlGSNOR impairs in vitro shoot proliferation and developmental architecture in tomato but confers enhanced disease resistance. Journal of Plant Physiology, 261, 153433.
Renau-Morata B, Nebauer S G, García-Carpintero V, Cañizares J, Minguet E G, De los Mozos M, Molina R V. 2021. Flower induction and development in saffron: Timing and hormone signalling pathways. Industrial Crops and Products, 164, 113370.
Sami F, Faizan M, Faraz A, Siddiqui H, Yusuf M, Hayat S. 2018. Nitric oxide-mediated integrative alterations in plant metabolism to confer abiotic stress tolerance, NO crosstalk with phytohormones and NO-mediated post translational modifications in modulating diverse plant stress. Nitric Oxide, 73, 22–38.
Seligman K, Saviani E E, Oliveira H C, Pinto-Maglio C A, Salgado I. 2008. Floral transition and nitric oxide emission during flower development in Arabidopsis thaliana is affected in nitrate reductase-deficient plants. Plant & Cell Physiology, 49, 1112–1121.
Shamsi S R H A A, Rabert G A, Kurup S S, Alyafei M A M, Jaleel A. 2021. Biochemical changes and antioxidant variations in date palm (Phoenix dactylifera L.) varieties during flower induction and development. Plants (Basel), 10, 2550.
Sheldon C C, Rouse D T, Finnegan E J, Peacock W J, Dennis E S. 2000. The molecular basis of vernalization: The central role of FLOWERING LOCUS C (FLC). Proceedings of the National Academy of Sciences of the United States of America, 97, 3753–3758.
Shi M, Wang C, Wang P, Yun F, Liu Z, Ye F, Wei L, Liao W. 2023. Role of methylation in vernalization and photoperiod pathway: A potential flowering regulator? Horticulture Research, 10, uhad174.
Shi M, Wang C, Wang P, Zhang M, Liao W. 2022. Methylation in DNA, histone, and RNA during flowering under stress condition: A review. Plant Science, 324, 111431.
Silva G F F, Silva E M, Correa J P O, Vicente M H, Jiang N, Notini M M, Junior A C, De Jesus F A, Castilho P, Carrera E, López-Díaz I, Grotewold E, Peres L E P, Nogueira F T S. 2019. Tomato floral induction and flower development are orchestrated by the interplay between gibberellin and two unrelated microRNA-controlled modules. The New Phytologist, 221, 1328–1344.
Soyk S, Müller N A, Park S J, Schmalenbach I, Jiang K, Hayama R, Zhang L, Van Eck J, Jiménez-Gómez J M, Lippman Z B. 2017. Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nature Genetics, 49, 162–168.
Sun K, Xue Y, Prijic Z, Wang S, Markovic T, Tian C, Wang Y, Xue J, Zhang X. 2022. DNA demethylation induces tree peony flowering with a low deformity rate compared to gibberellin by inducing PsFT expression under forcing culture conditions. International Journal of Molecular Sciences, 23, 6632.
Wang C, Hou X, Qi N, Li C, Luo Y, Hu D, Li Y, Liao W. 2022. An optimized method to obtain high-quality RNA from different tissues in Lilium davidii var. unicolor. Scientific Reports, 12, 2825.
Wang H, Liu X, Yang P, Wu R, Wang S, He S, Zhou Q. 2022. Potassium application promote cotton acclimation to soil waterlogging stress by regulating endogenous protective enzymes activities and hormones contents. Plant Physiology and Biochemistry, 185, 336–343.
Wang N, Zhang W, Qin M, Li S, Qiao M, Liu Z, Xiang F. 2017. Drought tolerance conferred in soybean (Glycine max. L) by GmMYB84, a novel R2R3-MYB transcription factor. Plant & Cell Physiology, 58, 1764–1776.
Wang Y, Zheng P C, Liu P P, Song X W, Guo F, Li Y Y, Ni D J, Jiang C J. 2019. Novel insight into the role of withering process in characteristic flavor formation of teas using transcriptome analysis and metabolite profiling. Food Chemistry, 272, 313–322.
Weng L, Bai X, Zhao F, Li R, Xiao H. 2016. Manipulation of flowering time and branching by overexpression of the tomato transcription factor SlZFP2. Plant Biotechnology Journal, 14, 2310–2321.
Weng L, Zhao F, Li R, Xu C, Chen K, and Xiao H. 2015. The zinc finger transcription factor SlZFP2 negatively regulates abscisic acid biosynthesis and fruit ripening in tomato. Plant Physiology, 167, 931–949.
Williams B P, Bechen L L, Pohlmann D A, Gehring M. 2022. Somatic DNA demethylation generates tissue-specific methylation states and impacts flowering time. Plant Cell, 34, 1189–1206.
Xing L, Li Y, Qi S, Zhang C, Ma W, Zuo X, Liang J, Gao C, Jia P, Shah K, Zhang D, An N, Zhao C, Han M, Zhao J. 2019. Comparative RNA-sequencing and DNA methylation analyses of apple (Malus domestica Borkh.) buds with diverse flowering capabilities reveal novel insights into the regulatory mechanisms of flower bud formation. Plant & Cell Physiology, 60, 1702–1721.
Xu M, Li X, Xie W, Lin C, Wang Q, Tao Z. 2023. ETHYLENE INSENSITIVE3/EIN3-LIKE1 modulate FLOWERING LOCUS C expression via histone demethylase interaction. Plant Physiology, 192, 2290–2300.
Yang J, Xu Y, Wang J, Gao S, Huang Y, Hung F Y, Li T, Li Q, Yue L, Wu K, Yang S. 2022. The chromatin remodelling ATPase BRAHMA interacts with GATA-family transcription factor GNC to regulate flowering time in Arabidopsis. Journal of Experimental Botany, 73, 835–847.
Zdunek-Zastocka E, Grabowska A, Branicki T, Michniewska B. 2017. Biochemical characterization of the triticale TsPAP1, a new type of plant prolyl aminopeptidase, and its impact on proline content and flowering time in transgenic Arabidopsis plants. Plant Physiology and Biochemistry, 116, 18–26.
Zhang H, Lang Z, Zhu J K. 2018. Dynamics and function of DNA methylation in plants. Nature Reviews Molecular Cell Biology, 19, 489–506.
Zhang J, Fang H, Huo J, Huang D, Wang B, Liao, W. 2018. Involvement of calcium and calmodulin in nitric oxide-regulated senescence of cut lily flowers. Frontiers in Plant Science, 9, 1284.
Zhang S, Zhang D, Fan S, Du L, Shen Y, Xing L, Li Y, Ma J, Han M. 2016. Effect of exogenous GA3 and its inhibitor paclobutrazol on floral formation, endogenous hormones, and flowering-associated genes in ‘Fuji’ apple (Malus domestica Borkh.). Plant Physiology and Biochemistry, 107, 178–186.
Zhang Z W, Fu Y F, Zhou Y H, Wang C Q, Lan T, Chen G D, Zeng J, Chen Y E, Yuan M, Yuan S. 2019. Nitrogen and nitric oxide regulate Arabidopsis flowering differently. Plant Science: an International Journal of Experimental Plant Biology, 284, 177–184.
Zhu P, Lister C, Dean C. 2021. Cold-induced Arabidopsis FRIGIDA nuclear condensates for FLC repression. Nature, 599, 657–661.
Zhu Y, Liao W, Niu L, Wang M, Ma Z. 2016. Nitric oxide is involved in hydrogen gas-induced cell cycle activation during adventitious root formation in cucumber. BMC Plant Biology, 16, 146.
|