Alcantara V, Don A, Well R, Nieder R. 2016. Deep ploughing increases agricultural soil organic matter stocks. Global Change Biology, 22, 2939–2956.

Angers D A, Eriksen-Hamel N S. 2008. Full-inversion tillage and organic carbon distribution in soil profiles: a meta-analysis. Soil Science Society of America Journal, 72, 1370–1374.

Ballhausen M, de Boer W. 2016. The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria. Soil Biology & Biochemistry, 102, 14–17.

Banerjee S, Walder F, Buchi L, Meyer M, Held A Y, Gattinger A, Keller T, Charles R, van der Heijden M. 2019. Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. The ISME Journal, 13, 1722–1736.

Barabasi A L, Oltvai Z N. 2004. Network biology: Understanding the cell’s functional organization. Nature Reviews Genetics, 5, 101–113.

Boer W D, Folman L B, Summerbell R C, Boddy L. 2005. Living in a fungal world: Impact of fungi on soil bacterial niche development. FEMS Microbiology Reviews, 29, 795–811.

Breiman L. 2001. Random forests. Machine Learning, 45, 5–32.

Bremner J M, Keeney D R. 1965. Steam distillation methods for determination of ammonium, nitrate and nitrite. Analytica Chimica Acta, 32, 485–495.

de Boer W, Folman L B, Summerbell R C, Boddy L. 2005. Living in a fungal world: Impact of fungi on soil bacterial niche development. FEMS Microbiology Reviews, 29, 795–811.

Carr A, Diener C, Baliga N S, Gibbons S M. 2019. Use and abuse of correlation analyses in microbial ecology. The ISME Journal, 13, 2647–2655.

Chaffron S, Rehrauer H, Pernthaler J, von Mering C. 2010. A global network of coexisting microbes from environmental and whole-genome sequence data. Genome Research, 20, 947–959.

Chen L, Jiang Y, Liang C, Luo Y, Xu Q, Han C, Zhao Q, Sun B. 2019. Competitive interaction with keystone taxa induced negative priming under biochar amendments. Microbiome, 7, 77.

Choudhury S G, Srivastava S, Singh R, Chaudhari S K, Sharma D K, Singh S K, Sarkar D. 2014. Tillage and residue management effects on soil aggregation, organic carbon dynamics and yield attribute in rice–wheat cropping system under reclaimed sodic soil. Soil & Tillage Research, 136, 76–83.

Creamer R E, Hannula S E, Van Leeuwen J P, Stone D, Rutgers M, Schmelz R M, de Ruiter P C, Heniksen N B, Bolger T, Bouffaud M L, Buee M, Carvalho F, Costa D, Dirilgen T, Francisco R, Griffiths B S, Griffiths R, Martin F, Silva P M D, Mendes S, et al. 2016. Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe. Applied Soil Ecology, 97, 112–124.

Cremer J, Melbinger A, Wienand K, Henriquez T, Jung H, Frey E. 2019. Cooperation in microbial populations: Theory and experimental model systems. Journal of Molecular Biology, 431, 4599–4644.

Delgado-Baquerizo M, Maestre F T, Reich P B, Jeffries T C, Gaitan J J, Encinar D, Berdugo M, Campbell C D, Singh B K. 2016. Microbial diversity drives multifunctionality in terrestrial ecosystems. Nature Communication, 7, 10541.

Dimassi B, Cohan J, Labreuche J, Mary B. 2013. Changes in soil carbon and nitrogen following tillage conversion in a long-term experiment in northern France. Agriculture, Ecosystems & Environment, 169, 12–20.

Fan K, Delgado-Baquerizo M, Guo X, Wang D, Zhu Y G, Chu H. 2021. Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment. The ISME Journal, 15, 550–561.

Fanin N, Gundale M J, Farrell M, Ciobanu M, Baldock J A, Nilsson M C, Kardol P, Wardle D A. 2018. Consistent effects of biodiversity loss on multifunctionality across contrasting ecosystems. Nature Ecology & Evolution, 2, 269–278.

Fath B D, Scharler U M, Ulanowicz R E, Hannon B. 2007. Ecological network analysis: Network construction. Ecological Modelling, 208, 49–55.

Feiziene D, Feiza V, Karklins A, Versuliene A, Janusauskaite D, Antanaitis S. 2018. After-effects of long-term tillage and residue management on topsoil state in boreal conditions. European Journal of Agronomy, 94, 12–24.

Freilich S, Kreimer A, Meilijson I, Gophna U, Sharan R, Ruppin E. 2010. The large-scale organization of the bacterial network of ecological co-occurrence interactions. Nucleic Acids Research, 38, 3857–3868.

Ghannoum M A, Jurevic R J, Mukherjee P K, Cui F, Sikaroodi M, Naqvi A, Gillevet P M. 2010. Characterization of the oral fungal microbiome (mycobiome) in healthy individuals. PLoS Pathogens, 6, e1000713.

van der Heijden M G, Bardgett R D, van Straalen N M. 2008. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecology Letters, 11, 296–310.

Hernandez D J, David A S, Menges E S, Searcy C A, Afkhami M E. 2021. Environmental stress destabilizes microbial networks. The ISME Journal, 15, 1722–1734.

Herren C M, Mcmahon K D. 2018. Keystone taxa predict compositional change in microbial communities. Environmental Microbiology, 20, 2207–2217.

ISSS (International Society of Soil Science). 1930. Rules of the International Society of Soil Science. ISSS, Leningrad.

Jackson M L. 1973. Soil Chemical Analysis. Prentice Hall Inc., India. pp. 281–285.

Jiang Y, Li S, Li R, Zhang J, Liu Y, Lv L, Zhu H, Wu W, Li W. 2017. Plant cultivars imprint the rhizosphere bacterial community composition and association networks. Soil Biology & Biochemistry, 109, 145–155.

Jiao S, Chen W, Wang J, Du N, Li Q, Wei G. 2018. Soil microbiomes with distinct assemblies through vertical soil profiles drive the cycling of multiple nutrients in reforested ecosystems. Microbiome, 6, 146.

Jobbagy E G, Jackson R B. 2000. The vertical distribution of soil organic carbon and its relation to climate and vegetation. Ecological Applications, 10, 423–436.

Karimi B, Dequiedt S, Terrat S, Jolivet C, Arrouays D, Wincker P, Cruaud C, Bispo A, Chemidlin P N, Ranjard L. 2019. Biogeography of soil bacterial networks along a gradient of cropping intensity. Scientific Reports, 9, 3812.

Liu N, Li Y, Cong P, Wang J, Guo W, Pang H, Zhang L. 2021. Depth of straw incorporation significantly alters crop yield, soil organic carbon and total nitrogen in the North China Plain. Soil & Tillage Research, 205, 104772.

Lu R K. 2000. Analytical Methods of Soil Agricultural Chemistry. China Agricultural Science and Technology Press, Beijing, China. pp. 56–57. (in Chinese)

Ma B, Lv X, Cai Y, Chang S X, Dyck M F. 2018. Liming does not counteract the influence of long-term fertilization on soil bacterial community structure and its co-occurrence pattern. Soil Biology & Biochemistry, 123, 45–53.

Ma B, Wang H, Dsouza M, Lou J, He Y, Dai Z, Brookes P C, Xu J, Gilbert J A. 2016. Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern china. The ISME Journal, 10, 1891–1901.

Marschner P, Umar S, Baumann K. 2011. The microbial community composition changes rapidly in the early stages of decomposition of wheat residue. Soil Biology Biochemistry, 43, 445–451.

Neilson J W, Quade J, Ortiz M, Nelson W M, Legatzki A, Tian F, Lacomb M, Betancourt J L, Wing R A, Soderlund C A, Maier R M. 2012. Life at the hyperarid margin: Novel bacterial diversity in arid soils of the Atacama Desert, Chile. Extremophiles, 16, 553–566.

Pansu M, Gautheyrou J. 2006. Handbook of Soil Analysis: Mineralogical: Organic and Inorganic Methods. Vol. 993. Springer-Verlag, Heidelberg.

Ren H, Huang B, Fernandez-Garcia V, Miesel J, Yan L, Lv C. 2020. Biochar and rhizobacteria amendments improve several soil properties and bacterial diversity. Microorganisms, 8, 502.

Samson M, Chantigny M H, Vanasse A, Menasseri-Aubry S, Royer I, Angers D A. 2021. Response of subsurface C and N stocks dominates the whole-soil profile response to agricultural management practices in a cool, humid climate. Agriculture, Ecosystems & Environment, 320, 107590.

Sanaullah M, Chabbi A, Maron P, Baumann K, Tardy V, Blagodatskaya E, Kuzyakov Y, Rumpel C. 2016. How do microbial communities in top- and subsoil respond to root litter addition under field conditions? Soil Biology & Biochemistry, 103, 28–38.

Schimel J P, Schaeffer S M. 2012. Microbial control over carbon cycling in soil. Front Microbiology, 3, 348.

Schjønning P, Thomsen I K. 2013. Shallow tillage effects on soil properties for temperate-region hard-setting soils. Soil & Tillage Research, 132, 12–20.

Shi Y, Delgado-Baquerizo M, Li Y, Yang Y, Zhu Y G, Penuelas J, Chu H. 2020. Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems. Environment International, 142, 105869.

Steinmann T, Welp G, Wolf A, Holbeck B, Große-Rüschkamp T, Amelung W. 2016. Repeated monitoring of organic carbon stocks after eight years reveals carbon losses from intensively managed agricultural soils in western Germany. Journal of Plant Nutrition and Soil Science, 179, 355–366.

Tardy V, Chabbi A, Charrier X, de Berranger C, Reignier T, Dequiedt S, Faivre-Primot C, Terrat S, Ranjard L, Maron P A. 2015. Land use history shifts in situ fungal and bacterial successions following wheat straw input into the soil. PLoS ONE, 10, e130672.

Vos C, Don A, Hobley E U, Prietz R, Heidkamp A, Freibauer A. 2019. Factors controlling the variation in organic carbon stocks in agricultural soils of Germany. European Journal of Soil Science, 70, 550–564.

Wagg C, Bender S F, Widmer F, van der Heijden M G. 2014. Soil biodiversity and soil community composition determine ecosystem multifunctionality. Proceedings of the National Academy of Sciences of the United States of America, 111, 5266–5270.

Wood S A, Gilbert J A, Leff J W, Fierer N, D’Angelo H, Bateman C, Gedallovich S M, Gillikin C M, Gradoville M R, Mansor P, Massmann A, Yang N, Turner B L, Brearley F Q, Mcguire K L. 2017. Consequences of tropical forest conversion to oil palm on soil bacterial community and network structure. Soil Biology & Biochemistry, 112, 258–268.

Xue P, Minasny B, Mcbratney A B. 2022. Land-use affects soil microbial co-occurrence networks and their putative functions. Applied Soil Ecology, 169, 104184.

Ye Z, Li J, Wang J, Zhang C, Liu G, Dong Q G. 2021. Diversity and co-occurrence network modularization of bacterial communities determine soil fertility and crop yields in arid fertigation agroecosystems. Biology and Fertility of Soils, 57, 809–824.

Yuan J, Wen T, Zhang H, Zhao M, Penton C R, Thomashow L S, Shen Q. 2020. Predicting disease occurrence with high accuracy based on soil macroecological patterns of fusarium wilt. The ISME Journal, 14, 2936–2950.

Yuan M M, Guo X, Wu L, Zhang Y, Xiao N, Ning D, Shi Z, Zhou X, Wu L, Yang Y, Tiedje J M, Zhou J. 2021. Climate warming enhances microbial network complexity and stability. Nature Climate Change, 11, 343–348.

Yusoff M Z, Hu A, Feng C, Maeda T, Shirai Y, Hassan M A, Yu C P. 2013. Influence of pretreated activated sludge for electricity generation in microbial fuel cell application. Bioresource Technology, 145, 90–96.

Zhang C, Liu G, Xue S, Wang G. 2016. Soil bacterial community dynamics reflect changes in plant community and soil properties during the secondary succession of abandoned farmland in the Loess Plateau. Soil Biology & Biochemistry, 97, 40–49.

Zhang N, Chen X, Han X, Lu X, Yan J, Zou W, Yan L. 2021. Responses of microbial nutrient acquisition to depth of tillage and incorporation of straw in a Chinese mollisol. Frontiers in Environmental Science, 9, 737075.

Zheng W, Zhao Z, Gong Q, Zhai B, Li Z. 2018. Responses of fungal–bacterial community and network to organic inputs vary among different spatial habitats in soil. Soil Biology & Biochemistry, 125, 54–63.