|
Andargie M, Vinas M, Rathgeb A, Möller E, Karlovsky P. 2021. Lignans of sesame (Sesamum indicum L.): A comprehensive review. Molecules, 26, 883.
Ashikari M, Matsuoka M. 2006. Identification, isolation, and pyramiding of quantitative trait loci for rice breeding. Trends in Plant Science, 11, 344–350.
Cha J K, Park H, Kwon Y, Lee S M, Jang S G, Kwon S W, Lee J H. 2024. Synergizing breeding strategies via combining speed breeding, phenotypic selection, and marker-assisted backcrossing for the introgression of Glu-B1i in wheat. Frontiers in Plant Science, 15, 1402709.
Chen M H, Fjellstrom R G, Christensen E F, Bergman C J. 2010. Development of three allele-specific codominant rice Waxy gene PCR markers suitable for marker-assisted selection of amylose content and paste viscosity. Molecular Breeding, 26, 513–523.
Cingolani P, Platts A, Wang L L, Coon M, Nguyen T, Wang L, Land S J, Lu X, Ruden D M. 2012. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly, 6, 80–92.
Cui C, Mei H, Liu Y, Zhang H, Zheng Y. 2017. Genetic diversity, population structure, and linkage disequilibrium of an association-mapping panel revealed by genome-wide SNP markers in sesame. Frontiers in Plant Science, 8, 1189.
Davey J W, Hohenlohe P A, Etter P D, Boone J Q, Catchen J M, Blaxter M L. 2011. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews Genetics, 12, 499–510.
Dossou S S K, Xu F T, Dossa K, Zhou R, Zhao Y Z, Wang L H. 2023. Antioxidant lignans sesamin and sesamolin in sesame (Sesamum indicum L.): A comprehensive review and future prospects. Journal of Integrative Agriculture, 22, 14–30.
Elshire R J, Glaubitz J C, Sun Q, Poland J A, Kawamoto K, Buckler E S, Mitchell S E. 2011. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE, 6, e19379.
Fischer M C, Rellstab C, Leuzinger M, Roumet M, Gugerli F, Shimizu K K, Holderegger R, Widmer A. 2017. Estimating genomic diversity and population differentiation - An empirical comparison of microsatellite and SNP variation in Arabidopsis halleri. BMC Genomics, 18, 69.
Fu Y B, Peterson G W, Dong Y. 2016. Increasing genome sampling and improving SNP genotyping for genotyping-by-sequencing with new combinations of restriction enzymes. G3 (Bethesda), 6, 845–856.
Hamblin M, Rabbi I. 2014. The effects of restriction-enzyme choice on properties of genotyping-by-sequencing libraries: A study in cassava (Manihot esculenta). Crop Science, 54, 2603–2608.
Hansson S O, Åman P, Becker W, Koning D J, Lagerkvist C, Larsson I, Lehrman A, Risérus U, Stymne S. 2018. Breeding for public health: A strategy. Trends in Food Science & Technology, 80, 131–140.
He J, Zhao X, Laroche A, Lu Z X, Liu H, Li Z. 2014. Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding. Frontiers in Plant Science, 5, 484.
He Q, Xu F, Min M H, Chu S H, Kim K W, Park Y J. 2019. Genome-wide association study of vitamin E using genotyping by sequencing in sesame (Sesamum indicum). Genes Genomics, 41, 1085–1093.
Jaganathan D, Bohra A, Thudi M, Varshney R K. 2020. Fine mapping and gene cloning in the post-NGS era: Advances and prospects. Theoretical and Applied Genetics, 133, 1791–1810.
Kim C, Guo H, Kong W, Chandnani R, Shuang L S, Paterson A H. 2016. Application of genotyping by sequencing technology to a variety of crop breeding programs. Plant Science, 242, 14–22.
Kim H M, Lee J M, Park J Y, Lee S L, Han S, Kim H Y, Son D W, Choi S Y, Lee S H. 2008. Phytosterols and lignans from the sesame dregs of Sesamum indicum. Korean Journal of Plant Resources, 21, 420–426.
Kim M, Kim S, Kim J, Oh E, Kim S, Lee J, Lee E, Lee M. 2022. Antioxidant and hepatoprotective effects of different varieties of sesame (Sesamum indicum L.) with variation in lignan content. Journal of the Korean Society of Food Science and Nutrition, 51, 660–670.
Kim S, Lee E, Lee J, An Y J, Oh E, Kim J I, Kim S W, Kim M Y, Lee M H, Cho K S. 2023. Identification of QTLs and allelic effect controlling lignan content in sesame (Sesamum indicum L.) using QTL-seq approach. Frontiers in Genetics, 14, 1289793.
Lee E, Yang X, Ha J, Kim M Y, Park K Y, Lee S H. 2021. Identification of a locus controlling compound raceme inflorescence in mungbean [Vigna radiata (L.) R. Wilczek]. Frontiers in Genetics, 12, 642518.
Li Q Z, Zuo Z W, Liu Y. 2023. Recent status of sesaminol and its glucosides: Synthesis, metabolism, and biological activities. Critical Reviews in Food Science and Nutrition, 63, 12043–12056.
Loskutov I G, Khlestkina E K. 2021. Wheat, barley, and oat breeding for health benefit components in grain. Plants (Basel), 10, 86.
Miao C, Fang J, Li D, Liang P, Zhang X, Yang J, Schnable J C, Tang H. 2018. Genotype-corrector: Improved genotype calls for genetic mapping in F2 and RIL populations. Scientific Reports, 8, 10088.
Moazzami A, Andersson R, Kamal-Eldin A. 2006. HPLC analysis of sesaminol glucosides in sesame seeds. Journal of Agricultural and Food Chemistry, 54, 633–638.
Murata J, Ono E, Yoroizuka S, Toyonaga H, Shiraishi A, Mori S, Tera M, Azuma T, Nagano A J, Nakayasu M. 2017. Oxidative rearrangement of (+)-sesamin by CYP92B14 co-generates twin dietary lignans in sesame. Nature Communications, 8, 1–10.
Neff M M, Turk E, Kalishman M. 2002. Web-based primer design for single nucleotide polymorphism analysis. Trends in Genetics, 18, 613–615.
Nguyen T K, Yu J, Choi W, In B C, Lim J H. 2018. Optimization of genotyping-by-sequencing (GBS) in Chrysanthemums: Selecting proper restriction enzymes for GBS library construction. Horticultural Science and Technology, 36, 108–114.
Ono E, Nakai M, Fukui Y, Tomimori N, Fukuchi-Mizutani M, Saito M, Satake H, Tanaka T, Katsuta M, Umezawa T. 2006. Formation of two methylenedioxy bridges by a Sesamum CYP81Q protein yielding a furofuran lignan, (+)-sesamin. Proceedings of the National Academy of Sciences of the United States of America, 103, 10116–10121.
Ben Othman S, Katsuno N, Kanamaru Y, Yabe T. 2015. Water-soluble extracts from defatted sesame seed flour show antioxidant activity in vitro. Food Chemistry, 175, 306–314.
Pathak N, Rai A K, Kumari R, Bhat K V. 2014. Value addition in sesame: A perspective on bioactive components for enhancing utility and profitability. Pharmacognosy Reviews, 8, 147–155.
Pearson K. 1896. Mathematical contributions to the theory of evolution. III. Regression, heredity, and panmixia. Philosophical Transactions of the Royal Society A, 187, 253–318.
Poland J A, Brown P J, Sorrells M E, Jannink J L. 2012. Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS ONE, 7, e32253.
Poland J A, Rife T. 2012. Genotyping-by-sequencing for plant breeding and genetics. The Plant Genome Journal, 5, 92–102.
Pootakham W, Sonthirod C, Naktang C, Jomchai N, Sangsrakru D, Tangphatsornruang S. 2016. Effects of methylation-sensitive enzymes on the enrichment of genic SNPs and the degree of genome complexity reduction in a two-enzyme genotyping-by-sequencing (GBS) approach: A case study in oil palm (Elaeis guineensis). Molecular Breeding, 36, 154.
Ruperao P, Bajaj P, Subramani R, Yadav R, Reddy Lachagari V B, Lekkala S P, Rathore A, Archak S, Angadi U B, Singh R, Singh K, Mayes S, Rangan P. 2023. A pilot-scale comparison between single and double-digest RAD markers generated using GBS strategy in sesame (Sesamum indicum L.). PLoS ONE, 18, e0286599.
Satake H, Ono E, Murata J. 2013. Recent advances in the metabolic engineering of lignan biosynthesis pathways for the production of transgenic plant-based foods and supplements. Journal of Agricultural and Food Chemistry, 61, 11721–11729.
Schröder S, Mamidi S, Lee R, Osorno J, Pe M. 2016. Optimization of genotyping by sequencing (GBS) data in common bean (Phaseolus vulgaris L.). Molecular Breeding, 36, 1–9.
Seay D, Szczepanek A, De La Fuente G N, Votava E, Abdel-Haleem H. 2024. Genetic diversity and population structure of a large USDA sesame collection. Plants (Basel), 13, 1765.
Sonah H, Bastien M, Iquira E, Tardivel A, Légaré G, Boyle B, Normandeau É, Laroche J, Larose S, Jean M, Belzile F. 2013. An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping. PLoS ONE, 8, e54603.
Uncu A, Frary A, Karlovsky P, Doganlar S, Stamatov S. 2016. High-throughput single nucleotide polymorphism (SNP) identification and mapping in the sesame (Sesamum indicum L.) genome with genotyping by sequencing (GBS) analysis. Molecular Breeding, 36, 173.
Wang L, Xia Q, Zhang Y, Zhu X, Zhu X, Li D, Ni X, Gao Y, Xiang H, Wei X, Yu J, Quan Z, Zhang X. 2016. Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map. BMC Genomics, 17, 31.
Wang Y, Cao X, Zhao Y, Fei J, Hu X, Li N. 2017. Optimized double-digest genotyping by sequencing (ddGBS) method with high-density SNP markers and high genotyping accuracy for chickens. PLoS ONE, 12, e0179073.
Wu D, Wang X P, Zhang W. 2019. Sesamolin exerts anti-proliferative and apoptotic effect on human colorectal cancer cells via inhibition of JAK2/STAT3 signaling pathway. Cellular and Molecular Biology, 65, 96–100.
Xu F, Zhou R, Dossou S S K, Song S, Wang L. 2021. Fine mapping of a major pleiotropic QTL associated with sesamin and sesamolin variation in sesame (Sesamum indicum L.). Plants (Basel), 10, 1343.
Yadav R, Kalia S, Rangan P, Pradheep K, Rao G P, Kaur V, Pandey R, Rai V, Vasimalla C C, Langyan S, Sharma S, Thangavel B, Rana V S, Vishwakarma H, Shah A, Saxena A, Kumar A, Singh K, Siddique K H M. 2022. Current research trends and prospects for yield and quality improvement in sesame, an important oilseed crop. Frontiers in Plant Science, 13, 863521.
Yasumoto S, Katsuta M. 2006. Breeding a high-lignan-content sesame cultivar in the prospect of promoting metabolic functionality. Japan Agricultural Research Quarterly, 40, 123–129.
Zhang Y, Wang L, Gao Y, Li D, Yu J, Zhou R, Zhang X. 2018. Genetic dissection and fine mapping of a novel dt gene associated with determinate growth habit in sesame. BMC Genetics, 19, 38.
Zhang Y H, Liu M F, He J B, Wang Y F, Xing G N, Li Y, Yang S P, Zhao T J, Gai J Y. 2015. Marker-assisted breeding for transgressive seed protein content in soybean [Glycine max (L.) Merr]. Theoretical and Applied Genetics, 128, 1061–1072.
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