Ahmadian M, Suh J M, Hah N, Liddle C, Atkins A R, Downes M, Evans R M. 2013. PPARγ signaling and metabolism: the good, the bad and the future. Nature Medicine, 19, 557-566.
Ballatori N, Christian W V, Wheeler S G, Hammond C L. 2013. The heteromeric organic solute transporter, OSTalpha-OSTbeta/SLC51: a transporter for steroid-derived molecules. Molecular Aspects of Medicine, 34, 683-692.
Barber T M, McCarthy M I, Wass J A, Franks S. 2006. Obesity and polycystic ovary syndrome. Clinical Endocrinology, 65, 137-145.
Bolyen E, Rideout J R, Dillon M R, Bokulich N A, Abnet C C, Al-Ghalith G A, Alexander H, Alm E J, Arumugam M, Asnicar F, Bai Y, Bisanz J E, Bittinger K, Brejnrod A, Brislawn C J, Brown C T, Callahan B J, Caraballo-Rodriguez A M, Chase J, Cope E K, et al. 2019. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology, 37, 1091.
Boots C E, Jungheim E S. 2015. Inflammation and Human Ovarian Follicular Dynamics. Seminars in Reproductive Medicine, 33, 270-275.
Broughton D E, Moley K H. 2017. Obesity and female infertility: potential mediators of obesity's impact. Fertility and sterility, 107, 840-847.
Bu D, Luo H, Huo P, Wang Z, Zhang S, He Z, Wu Y, Zhao L, Liu J, Guo J, Fang S, Cao W, Yi L, Zhao Y, Kong L. 2021. KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis. Nucleic Acids Research, 49, W317-W325.
Bukovsky A, Presl J. 1979. Ovarian function and the immune system. Medical Hypotheses, 5, 415-436.
Chen X Y, Yu T T, Dou Y H, Ji Q Y, Guo L P, Geng Z Y. 2023. High dietary energy decreased reproductive performance through increasing lipid deposition in Yangzhou geese at late laying stage. Poultry Science, 102, 102915.
Clements W D, Parks R, Erwin P, Halliday M I, Barr J, Rowlands B J. 1996. Role of the gut in the pathophysiology of extrahepatic biliary obstruction. Gut, 39, 587-593.
Collins S L, Stine J G, Bisanz J E, Okafor C D, Patterson A D. 2023. Bile acids and the gut microbiota: metabolic interactions and impacts on disease. Nature Reviews Microbiology, 21, 236-247.
De Lima V J, De Andrade C R, Ruschi G E, Sass N. 2011. Serum lipid levels in pregnancies complicated by preeclampsia. Sao Paulo Medical Journal, 129, 73-76.
Devkota S, Wang Y, Musch M W, Leone V, Fehlner-Peach H, Nadimpalli A, Antonopoulos D A, Jabri B, Chang E B. 2012. Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice. Nature, 487, 104-108.
Diamanti-Kandarakis E, Dunaif A. 2012. Insulin Resistance and the Polycystic Ovary Syndrome Revisited: An Update on Mechanisms and Implications. Endocrine Reviews, 33, 981-1030.
Duffy D M, Ko C, Jo M, Brannstrom M, Curry T E. 2019. Ovulation: Parallels With Inflammatory Processes. Endocrine Reviews, 40, 369-416.
Dunaif A. 1997. Insulin resistance and the polycystic ovary syndrome: mechanism and implications for pathogenesis. Endocrine Reviews, 18, 774-800.
Dunning K R, Anastasi M R, Zhang V J, Russell D L, Robker R L. 2014. Regulation of Fatty Acid Oxidation in Mouse Cumulus-Oocyte Complexes during Maturation and Modulation by PPAR Agonists. Plos One, 9, e87327.
Ebejer K, Calleja-Agius J. 2013. The role of cytokines in polycystic ovarian syndrome. Gynecological Endocrinology, 29, 536-540.
Feeney A, Nilsson E, Skinner M K. 2014. Cytokine (IL16) and tyrphostin actions on ovarian primordial follicle development. Reproduction, 148, 321-331.
Gerritsen J, Fuentes S, Grievink W, van Niftrik L, Tindall B J, Timmerman H M, Rijkers G T, Smidt H. 2014. Characterization of Romboutsia ilealis gen. nov., sp. nov., isolated from the gastro-intestinal tract of a rat, and proposal for the reclassification of five closely related members of the genus Clostridium into the genera Romboutsia gen. nov., Intestinibacter gen. nov., Terrisporobacter gen. nov. and Asaccharospora gen. nov. International Journal of Systematic and Evolutionary Microbiology, 64, 1600-1616.
Guida E, Tassinari V, Colopi A, Todaro F, Cesarini V, Jannini B, Pellegrini M, Botti F, Rossi G, Rossi P, Jannini E A, Dolci S. 2022. MAPK activation drives male and female mouse teratocarcinomas from late primordial germ cells. Journal of Cell Science, 135, jcs259375.
Han H, Sun Y, Fan Y, Zhang H, Yang J, Chi R, Gao Y, Liu J, Li K, Li W, Liu Y. 2022. Microbial Diversity and Community Composition of Duodenum Microbiota of High and Low Egg-Yielding Taihang Chickens Identified Using 16S rRNA Amplicon Sequencing. Life, 12, 1262.
He Z, Liu R, Wang M, Wang Q, Zheng J, Ding J, Wen J, Fahey A G, Zhao G. 2023. Combined effect of microbially derived cecal SCFA and host genetics on feed efficiency in broiler chickens. Microbiome, 11, 198.
Hermier D, Saadoun A, Salichon M R, Sellier N, Rousselot-Paillet D, Chapman M J. 1991. Plasma lipoproteins and liver lipids in two breeds of geese with different susceptibility to hepatic steatosis: changes induced by development and force-feeding. Lipids, 26, 331-339.
Herrera E, Ortega-Senovilla H. 2010. Maternal lipid metabolism during normal pregnancy and its implications to fetal development. Clinical Lipidology, 5, 899-911.
Igal R A, Sinner D I. 2021. Stearoyl-CoA desaturase 5 (SCD5), a Delta-9 fatty acyl desaturase in search of a function. Biochimica Et Biophysica Acta-Molecular and Cell Biology of Lipids, 1866, 158840.
Igea A, Méndez R. 2010. Meiosis requires a translational positive loop where CPEB1 ensues its replacement by CPEB4. Embo Journal, 29, 2182-2193.
Jaye M, Krawiec J. 2004. Endothelial lipase and HDL metabolism. Current Opinion in Lipidology, 15, 183-189.
Jové M, Pradas I, Naudí A, Rovira-Llopis S, Bañuls C, Rocha M, Portero-Otin M, Hernández-Mijares A, Victor V M, Pamplona R. 2018. Lipidomics reveals altered biosynthetic pathways of glycerophospholipids and cell signaling as biomarkers of the polycystic ovary syndrome. Oncotarget, 9, 4522-4536.
Kim D, Langmead B, Salzberg S L. 2015. HISAT: a fast spliced aligner with low memory requirements. Nature Methods, 12, 357-360.
Kumariya S, Ubba V, Jha R K, Gayen J R. 2021. Autophagy in ovary and polycystic ovary syndrome: role, dispute and future perspective. Autophagy, 17, 2706-2732.
Lai H, Jia X, Yu Q X, Zhang C L, Qiao J, Guan Y F, Kang J H. 2014. High-Fat Diet Induces Significant Metabolic Disorders in a Mouse Model of Polycystic Ovary Syndrome. Biology Of Reproduction, 91, 127.
Lambert G, Amar M J A, Guo G, Brewer H B, Gonzalez F J, Sinal C J. 2003. The farnesoid X-receptor is an essential regulator of cholesterol homeostasis. Journal of biological chemistry, 278, 2563-2570.
Lan T, Haywood J, Rao A, Dawson P A. 2011. Molecular mechanisms of altered bile acid homeostasis in organic solute transporter-alpha knockout mice. Digestive Diseases, 29, 18-22.
Lei S, He S, Li X, Zheng B, Zhang Y, Zeng H. 2023. Effect of lotus seed resistant starch on small intestinal flora and bile acids in hyperlipidemic rats. Food Chemistry, 404, 134599.
Li A, Li F, Song W, Lei Z L, Sha Q Q, Liu S Y, Zhou C Y, Zhang X, Li X Z, Schatten H, Zhang T, Sun Q Y, Ou X H. 2023. Gut microbiota-bile acid-vitamin D axis plays an important role in determining oocyte quality and embryonic development. Clinical and Translational Medicine, 13, e1236.
Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv e-prints.
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Proc G P D. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
Liao Y, Smyth G K, Shi W. 2014. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics, 30, 923-930.
Liu H B, Lv Q Q, Dai L. 2020. Quantitative Analysis of 16S rRNA Gene Copies in Mouse Fecal Sample. Bio-protocol, e2003368.
Liu Y, Feng Y, Yang X, Lv Z, Li P, Zhang M, Wei F, Jin X, Hu Y, Guo Y, Liu D. 2023a. Mining chicken ileal microbiota for immunomodulatory microorganisms. Isme Journal, 17, 758-774.
Liu Y, Feng Y Q, Yang X Y, Lv Z T, Li P, Zhang M H, Wei F X, Jin X L, Hu Y F, Guo Y M, Liu D. 2023b. Mining chicken ileal microbiota for immunomodulatory microorganisms. Isme Journal, 17, 758-774.
Lorenzo-Zuniga V, Bartoli R, Planas R, Hofmann A F, Vinado B, Hagey L R, Hernandez J M, Mane J, Alvarez M A, Ausina V, Gassull M A. 2003. Oral bile acids reduce bacterial overgrowth, bacterial translocation, and endotoxemia in cirrhotic rats. Hepatology, 37, 551-557.
Lundasen T, Andersson E M, Snaith M, Lindmark H, Lundberg J, Ostlund-Lindqvist A M, Angelin B, Rudling M. 2012. Inhibition of intestinal bile acid transporter Slc10a2 improves triglyceride metabolism and normalizes elevated plasma glucose levels in mice. Plos One, 7, e37787.
Martin G, Kolida S, Marchesi J R, Want E, Sidaway J E, Swann J R. 2018. In Vitro Modeling of Bile Acid Processing by the Human Fecal Microbiota. Frontiers in Microbiology, 9, 1153.
Mignot M H, Drexhage H A, Kleingeld M, Van de Plassche-Boers E M, Rao B R, Schoemaker J. 1989. Premature ovarian failure. II: Considerations of cellular immunity defects. European Journal of Obstetrics, Gynecology, and Reproductive Biology, 30, 67-72.
Ohashi Y, Fujisawa T. 2019. Analysis of cluster XI bacteria in human feces. Bioscience of Microbiota Food and Health, 38, 65-68.
Ouyang Q, Hu S, Tang B, Hu B, Hu J, He H, Li L, Wang J. 2022. Comparative Transcriptome Analysis Provides Novel Insights into the Effect of Lipid Metabolism on Laying of Geese. Animals, 12, 1775.
Patel R K, Jain M. 2012. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. Plos One, 7, e30619.
Qi X, Yun C, Sun L, Xia J, Wu Q, Wang Y, Wang L, Zhang Y, Liang X, Wang L, Gonzalez F J, Patterson A D, Liu H, Mu L, Zhou Z, Zhao Y, Li R, Liu P, Zhong C, Pang Y, et al. 2019. Gut microbiota-bile acid-interleukin-22 axis orchestrates polycystic ovary syndrome. Nature Medicine, 25, 1225-1233.
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glockner F O. 2013. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research, 41, D590-596.
Rees D O, Crick P J, Jenkins G J, Wang Y, Griffiths W J, Brown T H, Al-Sarireh B. 2017. Comparison of the composition of bile acids in bile of patients with adenocarcinoma of the pancreas and benign disease. Journal Of Steroid Biochemistry And Molecular Biology, 174, 290-295.
Salva-Pastor N-T, Norberto C.Uribe, MisaelNuno-Lambarri, Natalia. 2019. Understanding the association of polycystic ovary syndrome and nonalcoholic fatty liver disease. The Journal of Steroid Biochemistry and Molecular Biology, 194, 105445.
Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett W S, Huttenhower C. 2011. Metagenomic biomarker discovery and explanation. Genome Biology, 12, R60.
Sharpe L J, Brown A J. 2013. Controlling cholesterol synthesis beyond 3-hydroxy-3-methylglutaryl-CoA reductase (HMGCR). Journal of biological chemistry, 288, 18707-18715.
Suzuki M T, Taylor L T, DeLong E F. 2000. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays. Applied and Environmental Microbiology, 66, 4605-4614.
Tang B, Tang L, Li S, Liu S, He J, Li P, Wang S, Yang M, Zhang L, Lei Y, Tu D, Tang X, Hu H, Ouyang Q, Chen X, Yang S. 2023. Gut microbiota alters host bile acid metabolism to contribute to intrahepatic cholestasis of pregnancy. Nature communications, 14, 1305.
Tania M, Khan M A, Song Y. 2010. Association of lipid metabolism with ovarian cancer. Current Oncology, 17, 6-11.
Therdtatha P, Song Y, Tanaka M, Mariyatun M, Almunifah M, Manurung N E P, Indriarsih S, Lu Y, Nagata K, Fukami K, Ikeda T, Lee Y K, Rahayu E S, Nakayama J. 2021. Gut Microbiome of Indonesian Adults Associated with Obesity and Type 2 Diabetes: A Cross-Sectional Study in an Asian City, Yogyakarta. Microorganisms, 9, 897.
Tsafriri A, Chun S Y, Zhang R, Hsueh A J W, Conti M. 1996. Oocyte maturation involves compartmentalization and opposing changes of cAMP levels in follicular somatic and germ cells: Studies using selective phosphodiesterase inhibitors. Developmental Biology, 178, 393-402.
Tu H, Okamoto A Y, Shan B. 2000. FXR, a bile acid receptor and biological sensor. Trends In Cardiovascular Medicine, 10, 30-35.
Vazquez-Moreno M, Perez-Herrera A, Locia-Morales D, Dizzel S, Meyre D, Stearns J C, Cruz M. 2021. Association of gut microbiome with fasting triglycerides, fasting insulin and obesity status in Mexican children. Pediatric Obesity, 16, e12748.
Vicente J S, Marco-Jimenez F, Perez-Garcia M, Naturil-Alfonso C, Penaranda D S, Viudes-de-Castro M P. 2022. Oocyte quality and in vivo embryo survival after ovarian stimulation in nulliparous and multiparous rabbit does. Theriogenology, 189, 53-58.
Wahlstrom A, Sayin S I, Marschall H U, Backhed F. 2016. Intestinal Crosstalk between Bile Acids and Microbiota and Its Impact on Host Metabolism. Cell Metabolism, 24, 41-50.
Wang L Y, Wang N, Le F, Li L, Lou H Y, Liu X Z, Zheng Y M, Qian Y Q, Chen Y L, Jiang X H, Huang H F, Jin F. 2015. Superovulation Induced Changes of Lipid Metabolism in Ovaries and Embryos and Its Probable Mechanism. Plos One, 10.
Wang Y, Xu L, Sun X, Wan X, Sun G, Jiang R, Li W, Tian Y, Liu X, Kang X. 2020. Characteristics of the fecal microbiota of high- and low-yield hens and effects of fecal microbiota transplantation on egg production performance. Research In Veterinary Science, 129, 164-173.
Wei R, Han C, Deng D, Ye F, Gan X, Liu H, Li L, Xu H, Wei S. 2021. Research progress into the physiological changes in metabolic pathways in waterfowl with hepatic steatosis. British Poultry Science, 62, 118-124.
Wei Z H, Li P C, Huang S J, Lkhagvagarav P, Zhu M Q, Liang C Y, Jia C L. 2019. Identification of key genes and molecular mechanisms associated with low egg production of broiler breeder hens in ad libitum. BMC Genomics, 20, 408.
Welch C L, Bretschger S, Wen P Z, Mehrabian M, Latib N, Fruchart-Najib J, Fruchart J C, Myrick C, Lusis A J. 2004. Novel QTLs for HDL levels identified in mice by controlling for Apoa2 allelic effects: confirmation of a chromosome 6 locus in a congenic strain. Physiological Genomics, 17, 48-59.
Wen C, Li Q, Lan F, Li X, Li G, Yan Y, Wu G, Yang N, Sun C. 2021. Microbiota continuum along the chicken oviduct and its association with host genetics and egg formation. Poultry Science, 100, 101104.
Wild R A, Rizzo M, Clifton S, Carmina E. 2011. Lipid levels in polycystic ovary syndrome: systematic review and meta-analysis. Fertility and sterility, 95, 1073-U1288.
Wu L L Y, Dunning K R, Yang X, Russell D L, Lane M, Norman R J, Robker R L. 2010. High-Fat Diet Causes Lipotoxicity Responses in Cumulus-Oocyte Complexes and Decreased Fertilization Rates. Endocrinology, 151, 5438-5445.
Xiao L, Pan G. 2017. An important intestinal transporter that regulates the enterohepatic circulation of bile acids and cholesterol homeostasis: The apical sodium-dependent bile acid transporter (SLC10A2/ASBT). Clinics And Research In Hepatology And Gastroenterology, 41, 509-515.
Yang X, Wu R, Qi D, Fu L, Song T, Wang Y, Bian Y, Shi Y. 2021. Profile of Bile Acid Metabolomics in the Follicular Fluid of PCOS Patients. Metabolites, 11, 845.
Yang Z Q, Zhang C H, Wang J P, Celi P, Ding X M, Bai S P, Zeng Q F, Mao X B, Zhuo Y, Xu S Y, Yan H, Zhang K Y, Shan Z G. 2020. Characterization of the Intestinal Microbiota of Broiler Breeders With Different Egg Laying Rate. Frontiers in Veterinary Science, 7, 599337.
Yin H, Huang J, Hu M. 2022. Moderate-Intensity Exercise Improves Endothelial Function by Altering Gut Microbiome Composition in Rats Fed a High-Fat Diet. Journal of Nippon Medical School, 89, 316-327.
Yu J, Zhang Y, Zhu Y, Li Y, Lin S, Liu W, Tao T. 2023. Circulating bile acid profile characteristics in PCOS patients and the role of bile acids in predicting the pathogenesis of PCOS. Frontiers In Endocrinology, 14, 1239276.
Yu X H, Qian K, Jiang N, Zheng X L, Cayabyab F S, Tang C K. 2014. ABCG5/ABCG8 in cholesterol excretion and atherosclerosis. Clinica Chimica Acta, 428, 82-88.
Yuan T, Li J, Wang Y, Li M, Yang A, Ren C, Qi D, Zhang N. 2022. Effects of Zearalenone on Production Performance, Egg Quality, Ovarian Function and Gut Microbiota of Laying Hens. Toxins, 14, 653.
Zaefarian F, Abdollahi M R, Cowieson A, Ravindran V. 2019. Avian Liver: The Forgotten Organ. Animals, 9, 63.
Zeng Q, Li D, He Y, Li Y, Yang Z, Zhao X, Liu Y, Wang Y, Sun J, Feng X, Wang F, Chen J, Zheng Y, Yang Y, Sun X, Xu X, Wang D, Kenney T, Jiang Y, Gu H, et al. 2019. Discrepant gut microbiota markers for the classification of obesity-related metabolic abnormalities. Science Reports, 9, 13424.
Zhang Z, Liu H, Yu B, Tao H, Li J, Wu Z, Liu G, Yuan C, Guo L, Cui B. 2020. Lycium barbarum polysaccharide attenuates myocardial injury in high-fat diet-fed mice through manipulating the gut microbiome and fecal metabolome. Food Research International, 138, 109778.
Zheng X, Chen T, Jiang R, Zhao A, Wu Q, Kuang J, Sun D, Ren Z, Li M, Zhao M, Wang S, Bao Y, Li H, Hu C, Dong B, Li D, Wu J, Xia J, Wang X, Lan K, et al. 2021. Hyocholic acid species improve glucose homeostasis through a distinct TGR5 and FXR signaling mechanism. Cell Metabolism, 33, 791-803.e797.
Zhou X, Stephens M. 2012. Genome-wide efficient mixed-model analysis for association studies. Nature Genetics, 44, 821-824.
Zhou Z, Zheng Z, Xiong X, Chen X, Peng J, Yao H, Pu J, Chen Q, Zheng M. 2021. Gut Microbiota Composition and Fecal Metabolic Profiling in Patients With Diabetic Retinopathy. Frontiers in Cell and Developmental Biology, 9, 732204.
|