Abdelrahman M, Nishiyama R, Tran C D, Kusano M, Nakabayashi R, Okazaki Y, Matsuda F, Chávez Montes R A, Mostofa M G, Li W. 2021. Defective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite networks to mitigate high salinity in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 118, e2105021118.

Barrero J M, Rodriguez P L, Quesada V, Piqueras P, Ponce M R, Micol J L. 2006. Both abscisic acid (ABA)‐dependent and ABA‐independent pathways govern the induction of NCED3, AAO3 and ABA1 in response to salt stress. Plant, Cell & Environment, 29, 2000-2008.

Bromham L, Bennett T. 2014. Salt tolerance evolves more frequently in C₄ grass lineages. Journal of Evolutionary Biology, 27, 653-659.

Chen K, Li G J, Bressan R A, Song C P, Zhu J K, Zhao Y. 2020. Abscisic acid dynamics, signaling, and functions in plants. Journal of Integrative Plant Biology, 62, 25-54.

Chen M L, Fu X M, Liu J Q, Ye T T, Hou S Y, Huang Y Q, Yuan B F, Wu Y, Feng Y Q. 2012. Highly sensitive and quantitative profiling of acidic phytohormones using derivatization approach coupled with nano-LC-ESI-Q-TOF-MS analysis. Journal of Chromatography B-Analytical Technologies in the Biomedical And Life Sciences, 905, 67-74.

Chen X M. 2004. A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science, 303, 2022-2025.

Cheng X, He Q, Tang S, Wang H, Zhang X, Lv M, Liu H, Gao Q, Zhou Y, Wang Q. 2021. The miR172/IDS1 signaling module confers salt tolerance through maintaining ROS homeostasis in cereal crops. New Phytologist, 230, 1017-1033.

Christin P A, Osborne C P, Chatelet D S, Columbus J T, Besnard G, Hodkinson T R, Garrison L M, Vorontsova M S, Edwards E J. 2013. Anatomical enablers and the evolution of C₄ photosynthesis in grasses. Proceedings of the National Academy of Sciences of the United States of America, 110, 1381-1386.

Colebrook E H, Thomas S G, Phillips A L, Hedden P. 2014. The role of gibberellin signalling in plant responses to abiotic stress. Journal of Experimental Biology, 217, 67-75.

Cortleven A, Leuendorf J E, Frank M, Pezzetta D, Bolt S, Schmülling T. 2019. Cytokinin action in response to abiotic and biotic stresses in plants. Plant, Cell & Environment, 42, 998-1018.

Cutler S R, Rodriguez P L, Finkelstein R R, Abrams S R. 2010. Abscisic acid: Emergence of a core signaling Network. Annual Review of Plant Biology, 61, 651-679.

Deinlein U, Stephan A B, Horie T, Luo W, Xu G, Schroeder J I. 2014. Plant salt-tolerance mechanisms. Trends in Plant Science, 19, 371-379.

Deng Y, Zhang H, Wang H, Xing G, Lei B, Kuang Z, Zhao Y, Li C, Dai S, Yang X. 2022. The construction and exploration of a comprehensive microRNA centered regulatory network in foxtail millet (Setaria italica L.). Frontiers in Plant Science, 13, 848474-848474.

Diao X, Schnable J, Bennetzen J, Li J. 2014. Initiation of setaria as a model plant. Frontiers of Agricultural Science and Engineer, 1, 16 -20.

Fahlgren N, Carrington J C. 2010. miRNA target prediction in plants. Plant MicroRNAs, 51-57.

Fahlgren N, Howell M D, Kasschau K D, Chapman E J, Sullivan C M, Cumbie J S, Givan S A, Law T F, Grant S R, Dangl J L. 2007. High-throughput sequencing of Arabidopsis microRNAs: Evidence for frequent birth and death of MIRNA genes. PLoS ONE, 2, e219.

Filgueiras C C, Martins A D, Pereira R V, Willett D S. 2019. The ecology of salicylic acid signaling: Primary, secondary and tertiary effects with applications in agriculture. International Journal of Molecular Sciences, 20, 5851.

Flowers T J, Rana M, Colmer T D. 2015. Sodium chloride toxicity and the cellular basis of salt tolerance in halophytes. Annals of Botany, 115, 419-431.

Fu F F, Xue H W. 2010. Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator. Plant Physiology, 154, 927-938.

Ghanem M E, Albacete A, Martínez-Andújar C, Acosta M, Romero-Aranda R, Dodd I C, Lutts S, Pérez-Alfocea F. 2008. Hormonal changes during salinity-induced leaf senescence in tomato (Solanum lycopersicum L.). Journal of Experimental Biology, 59, 3039-3050.

Ghannoum O, Evans J R, Caemmerer S V. 2011. Nitrogen and water use efficiency of C 4 plants. In: C₄ Photosynthesis and Related CO₂ Concentrating Mechanisms. 129-146.

Goswami K, Tripathi A, Sanan-Mishra N. 2017. Comparative miRomics of salt-tolerant and salt-sensitive rice. Journal of Integrative Bioinformatics, 14, 189-197.

He Q, Tang S, Zhi H, Chen J, Zhang J, Liang H, Alam O, Li H, Zhang H, Xing L, Li X, Zhang W, Wang H, Shi J, Du H, Wu H, Wang L, Yang P, Xing L, Yan H, et al. 2023. A graph-based genome and pan-genome variation of the model plant Setaria. Nature Genetics, 55, 1232–1242.

Hoang X L T, Nhi D N H, Thu N B A, Thao N P, Tran L S P. 2017. Transcription factors and their roles in signal transduction in plants under abiotic stresses. Current Genomics, 18, 483-497.

Hu Y, Zhao L, Chong K, Wang T. 2008. Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis. Journal of Plant Physiology, 165, 1717-1725.

Huang X, Hou L, Meng J, You H, Zhen L, Gong Z, Yang S, Shi Y. 2018. The antagonistic action of abscisic acid and cytokinin signaling mediates drought stress response in Arabidopsis. Molecular Plant, 11, 970-982.

Huang Y, Guo Y, Liu Y, Zhang F, Wang Z, Wang H, Wang F, Li D, Mao D, Luan S. 2018. 9-cis-epoxycarotenoid dioxygenase 3 regulates plant growth and enhances multi-abiotic stress tolerance in rice. Frontiers in plant Science, 9, 162.

Hussain M, Ahmad S, Hussain S, Lal R, Ul-Allah S, Nawaz A. 2018. Rice in saline soils: Physiology, biochemistry, genetics, and management. Advances in Agronomy, 148, 231-287.

Iglesias M J, Terrile M C, Windels D, Lombardo M C, Bartoli C G, Vazquez F, Estelle M, Casalongué C A. 2014. MiR393 regulation of auxin signaling and redox-related components during acclimation to salinity in Arabidopsis. PLoS ONE, 9, e107678.

Ji H, Pardo J M, Batelli G, Van Oosten M J, Bressan R A, Li X. 2013. The salt overly sensitive (SOS) pathway: Established and emerging roles. Molecular Plant, 6, 275-286.

Kazan K. 2015. Diverse roles of jasmonates and ethylene in abiotic stress tolerance. Trends Plant Sci (full name?), 20, 219-229.

Kieber J I, Schaller G E. 2018. Cytokinin signaling in plant development. Development, 145, dev149344.

Kiegle E, Moore CA, Haseloff J, Tester M A, Knight M R. 2000. Cell‐type‐specific calcium responses to drought, salt and cold in the Arabidopsis root. The Plant Journal, 23, 267-278.

Kim D, Langmead B, Salzberg S L. 2015. HISAT: A fast spliced aligner with low memory requirements. Nature Methods, 12, 357-360.

Langfelder P, Horvath S. 2008. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics, 9, 1-13.

Li W, Wang T, Zhang Y, Li Y. 2016. Overexpression of soybean miR172c confers tolerance to water deficit and salt stress, but increases ABA sensitivity in transgenic Arabidopsis thaliana. Journal of Experimental Botany, 67, 175-194.

Li Y, Zhou J, Li Z, Qiao J, Quan R, Wang J, Huang R, Qin H. 2022. SALT AND ABA RESPONSE ERF1 improves seed germination and salt tolerance by repressing ABA signaling in rice. Plant Physiology, 189, 1110-1127.

Li Q, Li Z, Wang M, Yan J, Fang L. 2023. Phosphorylation of SiRAV1 at Ser31 regulates the SiCAT expression to enhance salt tolerance in Setaria italica, Journal of Integrative Agriculture, 22, 3638-3651.

Lian H, Wang L, Ma N, Zhou C M, Han L, Zhang T Q, Wang J W. 2021. Redundant and specific roles of individual MIR172 genes in plant development. Plos Biology, 19, e3001044.

Lim CW, Kim J H, Baek W, Kim B S, Lee S C. 2012. Functional roles of the protein phosphatase 2C, AtAIP1, in abscisic acid signaling and sugar tolerance in Arabidopsis. Plant Science, 187, 83-88.

Liu D, Chen X, Liu J, Ye J, Gu Z. 2012. The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance. Journal of Experimental Biology, 63, 3899-3911.

Liu J, Cheng X, Liu D, Xu W, Wise R, Shen Q H. 2014. The miR9863 family regulates distinct Mla alleles in barley to attenuate NLR receptor-triggered disease resistance and cell-death signaling. Plos Genetics, 10, e1004755.

Love M I, Huber W, Anders S. 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15, 1-21.

Ma X, Zhang Q, Zhu Q, Liu W, Chen Y, Qiu R, Wang B, Yang Z, Li H, Lin Y. 2015. A robust CRISPR/Cas9 system for convenient, high-efficiency multiplex genome editing in monocot and dicot plants. Molecular Plant, 8, 1274-1284.

Mahajan S, Tuteja N. 2005. Cold, salinity and drought stresses: An overview. Archives of Biochemistry and Biophysics, 444, 139-158.

Mallikarjuna G, Mallikarjuna K, Reddy M, Kaul T. 2011. Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.). Biotechnol. Lett, 33, 1689-1697.

Martin S, Christoph B, Ivan David M C, Radomira V, Baldwin I T, Stefan M. 2015. The role of cis-zeatin-type cytokinins in plant growth regulation and mediating responses to environmental interactions. Journal of Experimental Botany, 66, 4873-4884.

Mason M G, Jha D, Salt D E, Tester M, Hill K. 2010. Type-B response regulators ARR1 and ARR12 regulate expression of AtHKT1;1 and accumulation of sodium in Arabidopsis shoots. Plant Journal, 64, 753-763.

Mittler R. 2002. Oxidative stress, antioxidants and stress tolerance. Trends in Plant Science, 7, 405-410.

Moustafa K, AbuQamar S, Jarrar M, Al-Rajab A J, Trémouillaux-Guiller J. 2014. MAPK cascades and major abiotic stresses. Plant Cell Reports, 33, 1217-1225.

Munemasa S, Hauser F, Park J, Waadt R, Brandt B, Schroeder J I. 2015. Mechanisms of abscisic acid-mediated control of stomatal aperture. Current Opinion in Plant Biology, 28, 154-162.

Mustilli A C, Merlot S, Vavasseur A, Fenzi F, Giraudat J. 2002. Arabidopsis OST1 protein kinase mediates the regulation of stomatal aperture by abscisic acid and acts upstream of reactive oxygen species production. The Plant Cell, 14, 3089-3099.

Nakagawa T, Suzuki T, Murata S, Nakamura S, Hino T, Maeo K, Tabata R, Kawai T, Tanaka K, Niwa Y. 2007. Improved Gateway binary vectors: High-performance vectors for creation of fusion constructs in transgenic analysis of plants. Bioscience, Biotechnology, and Biochemistry, 71, 2095-2100.

Naseem M, Bencurova E, Dandekar T. 2018. The cytokinin-activating LOG-family proteins are not lysine decarboxylases. Trends in Biochemical Sciences, 43, 232-236.

Nishiyama R, Watanabe Y, Fujita Y, Le D T, Kojima M, Werner T, Vankova R, Yamaguchi-Shinozaki K, Shinozaki K, Kakimoto T. 2011. Analysis of cytokinin mutants and regulation of cytokinin metabolic genes reveals important regulatory roles of cytokinins in drought, salt and abscisic acid responses, and abscisic acid biosynthesis. The Plant Cell, 23, 2169-2183.

Nishiyama R, Watanabe Y, Fujita Y, Le D T, Kojima M, Werner T, Vankova R, Yamaguchi-Shinozaki K, Shinozaki, K, Kakimoto T. 2011. Analysis of cytokinin mutants and regulation of cytokinin metabolic genes reveals important regulatory roles of cytokinins in drought, salt and abscisic acid responses, and abscisic acid biosynthesis. The Plant Cell, 23, 2169-2183.

Nolan T M, Brennan B, Yang M, Chen J, Zhang M, Li Z, Wang X, Bassham D C, Walley J, Yin Y. 2017. Selective autophagy of BES1 mediated by DSK2 balances plant growth and survival. Developmental Cell, 41, 33-46.

Nunes T D, Zhang D, Raissig M T. 2020. Form, development and function of grass stomata. The Plant Journal, 101, 780-799.

Oh D H, Dassanayake M, Haas J S, Kropornika A, Wright C, d’Urzo M P, Hong H, Ali S, Hernandez A, Lambert G M. 2010. Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis. Plant Physiology, 154, 1040-1052.

Pardo J, VanBuren R. 2021. Evolutionary innovations driving abiotic stress tolerance in C₄ grasses and cereals. Plant Cell, 33, 3391-3401.

Parmar, S., Gharat, S.A., Tagirasa, R., Chandra, T., Behera, L., Dash, S.K., and Shaw, B.P. 2020. Identification and expression analysis of miRNAs and elucidation of their role in salt tolerance in rice varieties susceptible and tolerant to salinity. PLoS One, 15, e0230958.

Pau S, Edwards E J, Still C J. 2013. Improving our understanding of environmental controls on the distribution of C₃ and C₄ grasses. Global Change Biology, 19, 184-196.

Sah S K, Reddy K R, Li J. 2016. Abscisic acid and abiotic stress tolerance in crop plants. Frontiers in Plant Science, 7, 571.

Sahito Z A, Wang L, Sun Z, Yan Q, Zhang X, Jiang Q, Ullah I, Tong Y, Li X. 2017. The miR172c-NNC1 module modulates root plastic development in response to salt in soybean. BMC Plant Biology, 17, 1-12.

Schmidt R, Mieulet D, Hubberten H M, Obata T, Hoefgen R, Fernie A R, Fisahn J, San Segundo B, Guiderdoni E, Schippers J H. 2013. SALT-RESPONSIVE ERF1 regulates reactive oxygen species–dependent signaling during the initial response to salt stress in rice. The Plant Cell, 25, 2115-2131.

Seok H Y, Tarte V N, Lee S Y, Park H Y, Moon Y H. 2014. Arabidopsis HRE1α, a splicing variant of AtERF73/HRE1, functions as a nuclear transcription activator in hypoxia response and root development. Plant Cell Reports, 33, 1255-1262.

Shannon P, Markiel A, Ozier O, Baliga N S, Wang J T, Ramage D, Amin N, Schwikowski B, Ideker T. 2003. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Research, 13, 2498-2504.

Sharwood R E, Ghannoum O, Kapralov M V, Gunn L H, Whitney S M. 2016. Temperature responses of Rubisco from Paniceae grasses provide opportunities for improving C₃ photosynthesis. Nature Plants, 2, 16186.

Tang C, Luo M, Zhang S, Jia G, Tang S, Jia Y, Zhi H, Diao X. 2023. Variations in chlorophyll content, stomatal conductance, and photosynthesis in Setaria EMS mutants. Journal of Integrative Agriculture, 22, 1618-1630.

Taylor S H, Ripley B S, Martin T, De-Wet LA, Woodward F I, Osborne C P. 2014. Physiological advantages of C4 grasses in the field: A comparative experiment demonstrating the importance of drought. Global Change Biology, 20, 1992-2003.

Tian T, Liu Y, Yan H, You Q, Yi X, Du Z, Xu W, Su Z. 2017. agriGO v2. 0: A GO analysis toolkit for the agricultural community, 2017 update. Nucleic Acids Research, 45, W122-W129.

To J P C, Kieber J J. 2008. Cytokinin signaling: Two-components and more. Trends in Plant Science, 13, 85-92.

Tran L S P, Urao T, Qin F, Maruyama K, Kakimoto T, Shinozaki K, Yamaguchi-Shinozaki K. 2007. Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine kinases in response to abscisic acid, drought, and salt stress in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 104, 20623-20628.

Ueda A, Kathiresan A, Bennett J, Takabe T. 2006. Comparative transcriptome analyses of barley and rice under salt stress. Theoretical and Applied Genetics, 112, 1286-1294.

Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi-Shinozaki K, Ishihama Y, Hirayama T, Shinozaki K. 2009. Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 106, 17588-17593.

Valenzuela C E, Acevedo-Acevedo O, Miranda G S, Vergara-Barros P, Holuigue L, Figueroa C R, Figueroa P M. 2016. Salt stress response triggers activation of the jasmonate signaling pathway leading to inhibition of cell elongation in Arabidopsis primary root. Journal of Experimental Botany, 67, 4209-4220.

Vasquez E A, Glenn E P, Guntenspergen G R, Brown J J, Nelson S G. 2006. Salt tolerance and osmotic adjustment of Spartina alterniflora (Poaceae) and the invasive M haplotype of Phragmites australis (Poaceae) along a salinity gradient. American Journal of Botany, 93, 1784-1790.

Wang D, Sun Z, Hu X, Xiong J, Hu L, Xu Y, Tang Y, Wu Y. 2021. The key regulator LcERF056 enhances salt tolerance by modulating reactive oxygen species-related genes in Lotus corniculatus. BMC Plant Biology, 21, 1-13.

Wang Q, Guan Y, Wu Y, Chen H, Chen F, Chu C. 2008. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Molecular Biology, 67, 589-602.

Wang Y, Shen W, Chan Z, Wu Y. 2015. Endogenous cytokinin overproduction modulates ROS homeostasis and decreases salt stress resistance in Arabidopsis thaliana. Frontiers in Plant Science, 6, 1004.

Wang Y, Xia D, Li W, Cao X, Ma F, Wang Q, Zhan X, Hu T. 2022. Overexpression of a tomato AP2/ERF transcription factor SlERF. B1 increases sensitivity to salt and drought stresses. Scientia Horticulturae, 304, 111332.

Wei S, Li X, Lu Z, Zhang H, Ye X, Zhou Y, Li J, Yan Y, Pei H, Duan F, Wang D, Chen S, Wang P, Zhang C, Shang L, Zhou Y, Yan P, Zhao M, Huang J, Bock R, Qian Q, Zhou W, et al. 2022. A transcriptional regulator that boosts grain yields and shortens the growth duration of rice. Science, 377, eabi8455.

Xiao S, Wan Y, Zhang L, Tang S, Sui Y, Bai Y, Wang Y, Liu M, Fan J, Zhang S, Hang J, Yang G, Yan K, Diao X, Zheng C, Wu C. 2022. SiPLATZ12 transcript factor regulates multiple yield traits and salt tolerance in foxtail millet. bioRxiv, 498439.

Yan Z, Wang J, Wang F, Xie C, Lv B, Yu Z, Dai S, Liu X, Xia G, Tian H. 2021. MPK3/6-induced degradation of ARR1/10/12 promotes salt tolerance in Arabidopsis. EMBO Reports, 22, e52457.

Yu Z, Duan X, Luo L, Dai S, Ding Z, Xia G. 2020. How plant hormones mediate salt stress responses. Trends in Plant Science, 25, 1117-1130.

Van Zelm E, Zhang Y, Testerink C. 2020. Salt tolerance mechanisms of plants. Annual Review of Plant Biology, 71, 403-433.

Zhang G, Liu X, Quan Z, Cheng S, Xu X, Pan S, Xie M, Zeng P, Yue Z, Wang W. 2012. Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nature Biotechnology, 30, 549-554.

Zhang Y, Kaiser E, Li T, Marcelis L F. 2022. NaCl affects photosynthetic and stomatal dynamics by osmotic effects and reduces photosynthetic capacity by ionic effects in tomato. Journal of Experimental Botany, 73, 3637-3650.

Zhao S P, Xu Z S, Zheng W J, Zhao W, Wang Y X, Yu T F, Chen M, Zhou Y B, Min D H, Ma Y Z. 2017. Genome-wide analysis of the RAV family in soybean and functional identification of GmRAV-03 involvement in salt and drought stresses and exogenous ABA treatment. Frontiers in Plant Science, 8, 905.

Zhao X, Yuan X, Xing Y, Dao J, Zhao D, Li Y, Li W, Wang Z. 2023. A meta‐analysis on morphological, physiological and biochemical responses of plants with PGPR inoculation under drought stress. Plant, Cell & Environment, 46, 199-214.

Zheng L, Zhang Q, Liu H, Wang X, Zhang X, Hu Z, Li S, Ji L, Ji M, Gu Y, Yang J, Shi Y, Huang Y, Zheng X. 2023. Fine mapping and discovery of a candidate gene MIR172e required for inflorescence development and lower floret abortion in maize ear. Journal of Integrative Agriculture.

Zhu J K. 2003. Regulation of ion homeostasis under salt stress. Current Opinion in Plant Biology, 6, 441-445.