Adekunle A, Fatunbi A. 2012. Approaches for setting-up multi-stakeholder platforms for agricultural research and development. World Applied Sciences Journal, 16, 981–988.

Amagai A, Honda Y, Ishikawa S, Hara Y, Kuwamura M, Shinozawa A, Sugiyama N, Ishihama Y, Takezawa D, Sakata Y, Shinozaki K, Umezawa T. 2018. Phosphoproteomic profiling reveals ABA-responsive phosphosignaling pathways in Physcomitrella patens. The Plant Journal, 94, 699–708.

Andrási N, Rigó G, Zsigmond L, Pérez-Salamó I, Papdi C, Klement E, Pettkó-Szandtner A, Baba A I, Ayaydin F, Dasari R. 2019. The mitogen-activated protein kinase 4-phosphorylated heat shock factor A4A regulates responses to combined salt and heat stresses. Journal of Experimental Botany, 70, 4903–4918.

Chang I F, Hsu J L, Hsu P H, Sheng W A, Lai S J, Lee C, Chen C W, Hsu J C, Wang S Y, Wang L Y, Chen C C. 2012. Comparative phosphoproteomic analysis of microsomal fractions of Arabidopsis thaliana and Oryza sativa subjected to high salinity. Plant Science, 185–186, 131–142.

Chen C, Chen H, Zhang Y, Thomas H R, Frank M H, He Y, Xia R. 2020. TBtools: An integrative toolkit developed for interactive analyses of big biological data. Molecular Plant, 13, 1194–1202.

Damaris R N, Yang P. 2021. Protein phosphorylation response to abiotic stress in plants. Plant Phosphoproteomics (Methods and Protocols), 2358, 17–43.

Doust A N, Kellogg E A, Devos K M, Bennetzen J L. 2009. Foxtail millet: A sequence-driven grass model system. Plant Physiology, 149, 137–141.

Duan Y B, Li J, Qin R Y, Xu R F, Li H, Yang Y C, Ma H, Li L, Wei P C, Yang J B. 2016. Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis. Plant Molecular Biology, 90, 49–62.

Feng C Z, Chen Y, Wang C, Kong Y H, Wu W H, Chen Y F. 2014. Arabidopsis RAV1 transcription factor, phosphorylated by SnRK2 kinases, regulates the expression of ABI3, ABI4, and ABI5 during seed germination and early seedling development. The Plant Journal, 80, 654–668.

Fu M, Kang H K, Son S H, Kim S K, Nam K H. 2014. A subset of Arabidopsis RAV transcription factors modulates drought and salt stress responses independent of ABA. Plant Cell Physiology, 55, 1892–904.

Gao Y, Han D, Jia W, Ma X, Yang Y, Xu Z. 2020. Molecular characterization and systematic analysis of NtAP2/ERF in tobacco and functional determination of NtRAV-4 under drought stress. Plant Physiology and Biochemistry, 156, 420–435.

Grebenok R J, Pierson E, Lambert G M, Gong F C, Afonso C L, Haldeman-Cahill R, Carrington J C, Galbraith D W. 1997. Green-fluorescent protein fusions for efficient characterization of nuclear targeting. The Plant Journal, 11, 573–586.

Hu L, Huang Y, Ding B, Cai R, Bai L. 2021. Selective action mechanism of fenclorim on rice and Echinochloa crusgalli is associated with the inducibility of detoxifying enzyme activities and antioxidative defense. Journal of Agricultural and Food Chemistry, 69, 5830–5839.

Hu Y, Guo S, Li X, Ren X. 2013. Comparative analysis of salt-responsive phosphoproteins in maize leaves using Ti4+-IMAC enrichment and ESI-Q-TOF MS. Electrophoresis, 34, 485–492.

Jiang H, Tang B, Xie Z, Nolan T, Ye H, Song G Y, Walley J, Yin Y. 2019. GSK 3-like kinase BIN 2 phosphorylates RD 26 to potentiate drought signaling in Arabidopsis. The Plant Journal, 100, 923–937.

Jie G, Zhou X, Dai K, Yuan X, Guo P, Shi W, Zhou M. 2022. Comprehensive analysis of YABBY gene family in foxtail millet (Setaria italica) and functional characterization of SiDL. Journal of Integrative Agriculture, 21, 2876–2887.

Kwon S J, Choi E Y, Choi Y J, Ahn J H, Park O K. 2006. Proteomics studies of post-translational modifications in plants. Journal of Experimental Botany, 57, 1547–1551.

Lata C, Mishra A K, Muthamilarasan M, Bonthala V S, Khan Y, Prasad M. 2014. Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.). PLoS ONE, 9, e113092.

Li A, Chen J, Lin Q, Zhao Y, Duan Y, Wai S C, Song C, Bi J. 2021. Transcription factor MdWRKY32 participates in starch–sugar metabolism by binding to the MdBam5 promoter in apples during postharvest storage. Journal of Agricultural and Food Chemistry, 69, 14906–14914.

Li J, Dong Y, Li C, Pan Y, Yu J. 2017. SiASR4, the target gene of SiARDP from Setaria italica, improves abiotic stress adaption in plants. Frontiers in Plant Science, 7, 2053.

Li Z J, Jia G Q, Li X Y, Li Y C, Zhi H, Tang S, Ma J F, Zhang S, Li Y D, Shang Z L, Diao X M. 2021. Identification of blast-resistance loci through genome-wide association analysis in foxtail millet (Setaria italica (L.) Beauv.). Journal of Integrative Agriculture, 20, 2056–2064.

Liu J, Deng Z, Liang C, Sun H, Li D, Song J, Zhang S, Wang R. 2021. Genome-wide analysis of RAV transcription factors and functional characterization of anthocyanin-biosynthesis-related RAV genes in pear. International Journal of Molecular Sciences, 22, 5567.

Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods, 25, 402–408.

Ma L, Ye J, Yang Y, Lin H, Yue L, Luo J, Long Y, Fu H, Liu X, Zhang Y. 2019. The SOS2-SCaBP8 complex generates and fine-tunes an AtANN4-dependent calcium signature under salt stress. Developmental Cell, 48, 697–709.

Min H, Zheng J, Wang J. 2014. Maize ZmRAV1 contributes to salt and osmotic stress tolerance in transgenic Arabidopsis. Journal of Plant Biology, 57, 28–42.

Pang Y H, Zhou X, Chen Y L, Bao J S. 2018. Comparative phosphoproteomic analysis of the developing seeds in two indica rice (Oryza sativa L.) cultivars with different starch quality. Journal of Agricultural & Food Chemistry, 66, 3030–3037.

Pi E, Zhu C, Fan W, Huang Y, Qu L, Li Y, Zhao Q, Ding F, Qiu L, Wang H. 2018. Quantitative phosphoproteomic and metabolomic analyses reveal GmMYB173 optimizes flavonoid metabolism in soybean under salt stress. Molecular & Cellular Proteomics, 17, 1209–1224.

Puranik S, Jha S, Srivastava P S, Sreenivasulu N, Prasad M. 2011. Comparative transcriptome analysis of contrasting foxtail millet cultivars in response to short-term salinity stress. Journal of Plant Physiology, 168, 280–287.

Shannon P, Markiel A, Ozier O, Baliga N S, Wang J T, Ramage D, Amin N, Schwikowski B, Ideker T. 2003. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Research, 13, 2498–2504.

Sharma N, Niranjan K. 2018. Foxtail millet: Properties, processing, health benefits, and uses. Food Reviews International, 34, 329–363.

Shin H Y, Nam K H. 2018. RAV1 negatively regulates seed development by directly repressing MINI3 and IKU2 in Arabidopsis. Molecules and Cells, 41, 1072–1080.

Tian J, Wang C, Xia J, Wu L, Xu G, Wu W, Li D, Qin W, Han X, Chen Q, Jin W, Tian F. 2019. Teosinte ligule allele narrows plant architecture and enhances high-density maize yields. Science, 365, 658–664.

Veeranagamallaiah G, Jyothsnakumari G, Thippeswamy M, Reddy P C O, Surabhi G K, Sriranganayakulu G, Mahesh Y, Rajasekhar B, Madhurarekha C, Sudhakar C. 2008. Proteomic analysis of salt stress responses in foxtail millet (Setaria italica L. cv. Prasad) seedlings. Plant Science, 175, 631–641.

Vu L D, Gevaert K, De Smet I. 2018. Protein language: Post-translational modifications talking to each other. Trends in Plant Science, 23, 1068–1080.

Wang F B, Wan C Z, Niu H F, Qi M Y, Gang L, Zhang F, Hu L B, Ye Y X, Wang Z X, Pei B L, Chen X H, Yuan C Y. 2023. OsMas1, a novel maspardin protein gene, confers tolerance to salt and drought stresses by regulating ABA signaling in rice. Journal of Integrative Agriculture, 22, 341–359.

Wang M, Guo W, Li J, Pan X, Pan L, Zhao J, Zhang Y, Cai S, Huang X, Wang A, Liu Q. 2021. The miR528-AO module confers enhanced salt tolerance in rice by modulating the ascorbic acid and abscisic acid metabolism and ROS scavenging. Journal of Agricultural and Food Chemistry, 69, 8634–8648.

Wang S, Guo T, Shen Y, Wang Z, Kang J, Zhang J, Yi F, Yang Q, Long R. 2021. Overexpression of MtRAV3 enhances osmotic and salt tolerance and inhibits growth of Medicago truncatula. Plant Physiology and Biochemistry, 163, 154–165.

Wei Y, Chang Y, Zeng H, Liu G, He C, Shi H. 2018. RAV transcription factors are essential for disease resistance against cassava bacterial blight via activation of melatonin biosynthesis genes. Journal of Pineal Research, 64, e12454.

Woo H R, Kim J H, Kim J, Kim J, Lee U, Song I J, Kim J H, Lee H Y, Nam H G, Lim P O. 2010. The RAV1 transcription factor positively regulates leaf senescence in Arabidopsis. Journal of Experimental Botany, 61, 3947–3957.

Wu C, Xiao S, Wan Y, Zhang L, Tang S, Sui Y, Bai Y, Wang Y, Liu M, Fan J, Zhang J, Yang G, Yan K, Diao X, Zheng C, Zheng C. 2022. SiPLATZ12 transcript factor regulates multiple yield traits and salt tolerance in foxtail millet (Setaria italica). bioRxiv, doi: 10.1101/2022.07.01.498439.

Xi L, Schulze W X, Wu X N. 2021. Phosphoproteomic analysis of plant membranes. Arabidopsis Protocols, 2200, 441–451.

Xiao S, Wan Y, Guo S, Fan J, Lin Q, Zheng C, Wu C. 2023. Transcription factor SiDi19-3 enhances salt tolerance of foxtail millet and Arabidopsis. International Journal of Molecular Sciences, 24, 2592.

Yan J, Kong N, Liu Q, Wang M, Lv K, Zeng H, Chen W, Luo J, Lou H, Song L, Wu J. 2023. Ti3C2Tx MXene nanosheets enhance the tolerance of Torreya grandis to Pb stress. Journal of Hazardous Materials, 445, 130647.

Yan J, Li J, Zhang H, Liu Y, Zhang A. 2022. ZmWRKY104 positively regulates salt tolerance by modulating ZmSOD4 expression in maize. The Crop Journal, 10, 555–564.

Yang L, Liu Y, Xiang Y, Sun X, Yan J, Zhang A. 2021. Establishment and optimization of genetic transformation system of stem tip in vitro of foxtail millet. Chinese Bulletin of Botany, 56, 71–79. (in Chinese)

Zhang M, Lv D, Ge P, Bian Y, Chen G, Zhu G, Li X, Yan Y. 2014. Phosphoproteome analysis reveals new drought response and defense mechanisms of seedling leaves in bread wheat (Triticum aestivum L.). Journal of Proteomics, 109, 290–308.

Zhang X M, Ma H, Ye J Y, Long H F, You Z B. 2015. Proteomic and phosphoproteomic analyses reveal extensive phosphorylation of regulatory proteins in developing rice anthers. The Plant Journal, 84, 527–544.

Zhang Z, Shi Y, Ma Y, Yang X, Yin X, Zhang Y, Xiao Y, Liu W, Li Y, Li S. 2020. The strawberry transcription factor FaRAV1 positively regulates anthocyanin accumulation by activation of FaMYB10 and anthocyanin pathway genes. Plant Biotechnology Journal, 18, 2267–2279.

Zhao S P, Xu Z S, Zheng W J, Zhao W, Wang Y X, Yu T F, Chen M, Zhou Y B, Min D H, Ma Y Z, Chai S C, Zhang X H. 2017. Genome-wide analysis of the RAV family in soybean and functional identification of GmRAV-03 involvement in salt and drought stresses and exogenous ABA treatment. Frontiers in Plant Science, 8, 905.

Zhou Y B, Liu C, Tang D Y, Yan L, Wang D, Yang Y Z, Gui J S, Zhao X Y, Li L G, Tang X D. 2018. The receptor-like cytoplasmic kinase STRK1 phosphorylates and activates CatC, thereby regulating H2O2 homeostasis and improving salt tolerance in rice. The Plant Cell, 30, 1100–1118.

Zou X, Liu M Y, Wu W H, Wang Y. 2020. Phosphorylation at Ser28 stabilizes the Arabidopsis nitrate transporter NRT2.1 in response to nitrate limitation. Journal of Integrative Plant Biology, 62, 865–876.