Ahemad M, Kibret M. 2014. Mechanisms and applications of plant growth promoting rhizobacteria: Current perspective. Journal of King Saud University (Science), 26, 1–20.

Al-Ali A, Deravel J, Krier F, Bechet M, Ongena M, Jacques P. 2018. Biofilm formation is determinant in tomato rhizosphere colonization by Bacillus velezensis FZB42. Environmental Science and Pollution Research, 25, 1–11.

Altaf M M, Ahmad I. 2017. In vitro and in vivo biofilm formation by Azotobacter isolates and its relevance to rhizosphere colonization. Rhizosphere, 3, 138–142.

Attia M S, El-Sayyad G S, Abd Elkodous M, El-Batal A I. 2020. The effective antagonistic potential of plant growth-promoting rhizobacteria against Alternaria solani-causing early blight disease in tomato plant. Scientia Horticulturae, 266, 109289.

Azabou M C, Gharbi Y, Medhioub I, Ennouri K, Barham H, Tounsi S, Triki M A. 2020. The endophytic strain Bacillus velezensis OEE1: An efficient biocontrol agent against Verticillium wilt of olive and a potential plant growth promoting bacteria. Biological Control, 142, 104168.

Bazzalo M, Heber E, Del Pero Martinez M, Caso O. 1985. Phenolic compounds in stems of sunflower plants inoculated with Sclerotinia sclerotiorum and their inhibitory effects on the fungus. Journal of Phytopathology, 112, 322–332.

Beauregard P B, Chai Y, Vlamakis H, Losick R, Kolter R. 2013. Bacillus subtilis biofilm induction by plant polysaccharides. Proceedings of the National Academy of Sciences of the United States of America, 110, E1621–E1630.

Ben Abdallah D, Frikha-Gargouri O, Tounsi S. 2018. Rizhospheric competence, plant growth promotion and biocontrol efficacy of Bacillus amyloliquefaciens subsp plantarum strain 32a. Biological Control, 124, 61–67.

Budiharjo A, Chowdhury S P, Dietel K, Beator B, Dolgova O, Fan B, Bleiss W, Ziegler J, Schmid M, Hartmann A, Borriss R. 2014. Transposon mutagenesis of the plant-associated Bacillus amyloliquefaciens ssp. plantarum FZB42 revealed that the nfrA and RBAM17410 genes are involved in plant–microbe-interactions. PLoS ONE, 9, e98267.

Calla B, Tri V, Radwan O, Hartman G L, Clough S J. 2009. Gene expression profiling soybean stem tissue early response to Sclerotinia sclerotiorum and in silico mapping in relation to resistance markers. Plant Genome, 2, 149–166.

Cao Y, Zhang Z, Ling N, Yuan Y, Zheng X, Shen B, Shen Q. 2011. Bacillus subtilis SQR 9 can control Fusarium wilt in cucumber by colonizing plant roots. Biology and Fertility of Soils, 47, 495–506.

Chen H, Seguin P, Jabaji S H. 2009. Differential expression of genes encoding the phenylpropanoid pathway upon infection of soybean seedlings by Rhizoctonia solani. Canadian Journal of Plant Pathology, 31, 356–367.

Chen Y, Yan F, Chai Y, Liu H, Kolter R, Losick R, Guo J H. 2013. Biocontrol of tomato wilt disease by Bacillus subtilis isolates from natural environments depends on conserved genes mediating biofilm formation. Environmental Microbiology, 15, 848–864.

Chowdhury S P, Dietel K, Raendler M, Schmid M, Junge H, Borriss R, Hartmann A, Grosch R. 2013. Effects of Bacillus amyloliquefaciens FZB42 on lettuce growth and health under pathogen pressure and its impact on the rhizosphere bacterial community, PLoS ONE, 8, e68818.

Chung C L, Poland J, Kump K, Benson J, Longfellow J, Walsh E, Balint-Kurti P Nelson R. 2011. Targeted discovery of quantitative trait loci for resistance to northern leaf blight and other diseases of maize. Theoretical and Applied Genetics, 123, 307–326.

Comas L H, Eissenstat D M, Lakso A N. 2000. Assessing root death and root system dynamics in a study of grape canopy pruning. The New Phytologist, 147, 171–178.

Compant S, Clement C, Sessitsch A. 2010. Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization. Soil Biology & Biochemistry, 42, 669–678.

Cui W, He P, Munir S, He P, Li X, Li Y, Wu J, Wu Y, Yang L, He P, He Y. 2019. Efficacy of plant growth promoting bacteria Bacillus amyloliquefaciens B9601-Y2 for biocontrol of southern corn leaf blight. Biological Control, 139, 104080.

Du Z, Bramlage W J. 1992. Modified thiobarbituric acid assay for measuring lipid oxidation in sugar-rich plant tissue extracts. Journal of Agricultural and Food Chemistry, 40, 1566–1570.

Einhardt A M, Oliveira L M, Ferreira S, Araújo W L, Medeiros D B, Fernie A R, Rodrigues F Á. 2022. Defense responses and oxidative metabolism of glyphosate-resistant soybean plants infected by Phakopsora pachyrhizi modulated by glyphosate and nickel. Physiological and Molecular Plant Pathology, 118, 101817.

Etchells J P, Smit M E, Gaudinier A, Williams C J, Brady S M. 2016. A brief history of the TDIF-PXY signalling module: balancing meristem identity and differentiation during vascular development. New Phytologist, 209, 474–484.

Gossen B D, Rimmer S R, Holley J D. 2001. First report of resistance to benomyl fungicide in Sclerotinia sclerotiorum. Plant Disease, 85, 1206–1206.

Guo X, Stotz H U. 2007. Defense against Sclerotinia sclerotiorum in Arabidopsis is dependent on jasmonic acid, salicylic acid, and ethylene signaling. Molecular Plant–Microbe Interactions, 20, 1384–1395.

Hayashi S, Gresshoff P M, Kinkema M. 2008. Molecular analysis of lipoxygenases associated with nodule development in soybean. Molecular Plant–Microbe Interactions, 21, 843–853.

Hirschi K D. 2004. The calcium conundrum: Both versatile nutrient and specific signal. Plant Physiology, 136, 2438–2442.

Iniguez A L, Dong Y, Triplett E W. 2004. Nitrogen fixation in wheat provided by Klebsiella pneumoniae 342. Molecular Plant-Microbe Interactions, 17, 1078–1085.

Jain K, Parida S, Mangwani N, Dash H R, Das S. 2013. Isolation and characterization of biofilm-forming bacteria and associated extracellular polymeric substances from oral cavity. Annals of Microbiology, 63, 1553–1562.

Jiang C H, Liao M J, Wang H K, Zheng M Z, Xu J J, Guo J H. 2018. Bacillus velezensis, a potential and efficient biocontrol agent in control of pepper gray mold caused by Botrytis cinerea. Biological Control, 126, 147–157.

Jiang C H, Wu F, Yu Z Y, Xie P, Ke H J, Li H W, Yu Y Y, Guo J H. 2015. Study on screening and antagonistic mechanisms of Bacillus amyloliquefaciens 54 against bacterial fruit blotch (BFB) caused by Acidovorax avenae subsp. citrulli. Microbiological Research, 170, 95–104.

Jiang W, Wang K, Wu Q, Dong S, Liu P, Zhang J. 2013. Effects of narrow plant spacing on root distribution and physiological nitrogen use efficiency in summer maize. The Crop Journal, 1, 77–83.

Jogaiah S, Satapute P, De Britto S, Konappa N, Udayashankar A C. 2020. Exogenous priming of chitosan induces upregulation of phytohormones and resistance against cucumber powdery mildew disease is correlated with localized biosynthesis of defense enzymes. International Journal of Biological Macromolecules, 162, 1825–1838.

Jung W J, Mabood F, Souleimanov A, Smith D L. 2011. Induction of defense-related enzymes in soybean leaves by class IId bacteriocins (thuricin 17 and bacthuricin F4) purified from Bacillus strains. Microbiological Research, 167, 14–19.

Karthika S, Midhun S J, Jisha M S. 2020. A potential antifungal and growth-promoting bacterium Bacillus sp. KTMA4 from tomato rhizosphere. Microbial Pathogenesis, 142, 104049.

Kumar S, Chauhan P S, Agrawal L, Raj R, Srivastava A, Gupta S, Mishra S K, Yadav, S, Singh P C, Raj S K, Nautiyal C S. 2016. Paenibacillus lentimorbus inoculation enhances tobacco growth and extenuates the virulence of cucumber mosaic virus. PLoS ONE, 11, e0149980.

Lau E T, Tani A, Khew C Y, Chua Y Q, San Hwang S. 2020. Plant growth-promoting bacteria as potential bio-inoculants and biocontrol agents to promote black pepper plant cultivation. Microbiological Research, 240, 126549.

Li H, Ding X, Wang C, Ke H, Wu Z, Wang Y, Liu H, Guo J. 2016. Control of Tomato yellow leaf curl virus disease by Enterobacter asburiae BQ9 as a result of priming plant resistance in tomatoes. Turkish Journal of Biology, 40, 150–159.

Li M, Peng S, Xu S, Yu D, Zhao M, Wen G. 2014. Application of Klebsiella spp. in agriculture and environmental management. Current Biotechnology, 6, 415–420. (in Chinese)

Liu D, Chen L, Zhu X, Wang Y, Xuan Y, Liu X, Chen L, Duan Y. 2018. Klebsiella pneumoniae SnebYK mediates resistance against Heterodera glycines and promotes soybean growth. Frontiers in Microbiology, 9, 1134.

Liu Y, Li Y, Bi Y, Jiang Q, Mao R, Liu Z, Prusky D B. 2021. Induction of defense response against Alternaria rot in Zaosu pear fruit by exogenous L-lysine through regulating ROS metabolism and activating defense-related proteins. Postharvest Biology and Technology, 179, 111567.

Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2–∆∆CT method. Methods, 25, 402–408.

Van Loon L, Bakker P. 2005. Induced systemic resistance as a mechanism of disease suppression by rhizobacteria. In: PGPR: Biocontrol and Biofertilization. Faculty of Biology Section Phytopathology, Utrecht University. The Netherlands. pp. 39–66.

Van Loon L, Bakker P. 2007. Root-associated bacteria inducing systemic resistance. In: Plant-Associated Bacteria. Springer, the Netherlands. pp. 269–316.

Van Loon L, Bakker P, Pieterse C. 1998. Systemic resistance induced by rhizosphere bacteria. Annual Review of Phytopathology, 36, 453–483.

Lugtenberg B, Kamilova F. 2009. Plant-growth-promoting rhizobacteria. Annual Review of Microbiology, 63, 541–556.

Ma L, Zhang H Y, Zhou X K, Yang C G, Zheng S C, Duo J L, Mo M H. 2018. Biological control tobacco bacterial wilt and black shank and root colonization by bio-organic fertilizer containing bacterium Pseudomonas aeruginosa NXHG29. Applied Soil Ecology, 129, 136–144.

Martinez-Viveros O, Jorquera M A, Crowley D E, Gajardo G, Mora M L. 2010. Mechanisms and practical considerations involved in plant growth promotion by rhizobacteria. Journal of Soil Science and Plant Nutrition, 10, 293–319.

Mayer A, Harel E, Ben-Shaul R. 1966. Assay of catechol oxidase - A critical comparison of methods. Phytochemistry, 5, 783–789.

Mitter N, Kazan K, Way H M, Broekaert W F, Manners J M. 1998. Systemic induction of an Arabidopsis plant defensin gene promoter by tobacco mosaic virus and jasmonic acid in transgenic tobacco. Plant Science, 136, 169–180.

Nautiyal C S. 1999. An efficient microbiological growth medium for screening phosphate solubilizing microorganisms. FEMS Microbiology Letters, 170, 265–270.

Van Oosten V R, Bodenhausen N, Reymond P, Van Pelt J A, Van Loon L C, Dicke M, Pieterse C M J. 2008. Differential effectiveness of microbially induced resistance against herbivorous insects in Arabidopsis. Molecular Plant–Microbe Interactions, 21, 919–930.

Patel S, Rajput K, Saraf M. 2017. Elicitation of plant defense enzymes against Fusarium oxysporum f. sp. lycopersici in tomato plant using a novel rhizobacteria Providencia rettgeri MSS2. Biocatalysis and Agricultural Biotechnology, 12, 308–313.

Pathan A, Bond J, Gaskin R. 2010. Sample preparation for SEM of plant surfaces. Materials Today, 12, 32–43.

Patil V R, Patel R M, Parekh V B, Pathak J, Saripalli G. 2021. Differential gene expression analyses of ten defence response genes during Fusarium wilt infection in resistant and susceptible pigeonpea cultivars. Plant Stress, 2, 100043.

Peeters E, Nelis H J, Coenye T. 2008. Comparison of multiple methods for quantification of microbial biofilms grown in microtiter plates. Journal of Microbiological Methods, 72, 157–165.

Penrose D M, Glick B R. 2003. Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria. Physiologia Plantarum, 118, 10–15.

Posada L F, Alvarez J C, Romero-Tabarez M, de-Bashan L, Villegas-Escobar V. 2018. Enhanced molecular visualization of root colonization and growth promotion by Bacillus subtilis EA-CB0575 in different growth systems. Microbiological Research, 217, 69–80.

Puri A, Padda K P, Chanway C P. 2020. In vitro and in vivo analyses of plant-growth-promoting potential of bacteria naturally associated with spruce trees growing on nutrient-poor soils. Applied Soil Ecology, 149, 103538.

Ramamoorthy V, Viswanathan R, Raguchander T, Prakasam V, Samiyappan R. 2001. Induction of systemic resistance by plant growth promoting rhizobacteria in crop plants against pests and diseases. Crop Protection, 20, 1–11

Sachdev D P, Chaudhari H G, Kasture V M, Dhavale D D, Chopade B A. 2009. Isolation and characterization of indole acetic acid (IAA) producing Klebsiella pneumoniae strains from rhizosphere of wheat (Triticum aestivum) and their effect on plant growth. Indian Journal of Experimental Biology, 47, 993–1000.

Samain E, Aussenac T, Salim S. 2019. The effect of plant genotype, growth stage, and mycosphaerella graminicola strains on the efficiency and durability of wheat-induced resistance by Paenibacillus sp. strain B2. Frontiers in Plant Science, 10, 587.

Selim S, Sanssene J, Rossard S, Courtois J. 2017. Systemic Induction of the defensin and phytoalexin pisatin pathways in pea (Pisum sativum) against Aphanomyces euteiches by acetylated and nonacetylated oligogalacturonides. Molecules, 22, 1017.

Senthilraja G, Anand T, Kennedy J S, Raguchander T, Samiyappan R. 2013. Plant growth promoting rhizobacteria (PGPR) and entomopathogenic fungus bioformulation enhance the expression of defense enzymes and pathogenesis-related proteins in groundnut plants against leafminer insect and collar rot pathogen. Physiological and Molecular Plant Pathology, 82, 10–19.

Shen L, Wang F, Yang J, Qian Y, Dong X, Zhan H. 2014. Control of tobacco mosaic virus by Pseudomonas fluorescens CZ powder in greenhouses and the field. Crop Protection, 56, 87–90.

Sierotzki H, Scalliet G. 2013. A review of current knowledge of resistance aspects for the next-generation succinate dehydrogenase inhibitor fungicides. Phytopathology, 103, 880–887.

Singh R P, Jha P, Jha P N. 2015. The plant-growth-promoting bacterium Klebsiella sp. SBP-8 confers induced systemic tolerance in wheat (Triticum aestivum) under salt stress. Journal of Plant Physiology, 184, 57–67.

Tan S Y, Yang C L, Mei X L, Shen S Y, Raza W, Shen Q R, Xu Y C. 2013. The effect of organic acids from tomato root exudates on rhizosphere colonization of Bacillus amyloliquefaciens t-5. Applied Soil Ecology, 64, 15–22.

Tank N, Rajendran N, Patel B, Saraf M. 2012. Evaluation and biochemical characterization of a distinctive pyoverdin from a Pseudomonas isolated from chickpea rhizosphere. Brazilian Journal of Microbiology, 43, 639–648.

Upchurch R G, Ramirez M E. 2010. Defense-related gene expression in soybean leaves and seeds inoculated with Cercospora kikuchii and Diaporthe phaseolorum var. meridionalis. Physiological and Molecular Plant Pathology, 75, 64–70.

Vlamakis H, Chai Y, Beauregard P, Losick R, Kolter R. 2013. Sticking together: Building a biofilm the Bacillus subtilis way. Nature Reviews Microbiology, 11, 157–168.

Wang S, Wu H, Qiao J, Ma L, Liu J, Xia Y, Gao X. 2009. Molecular mechanism of plant growth promotion and induced systemic resistance to tobacco mosaic virus by Bacillus spp. Journal of Microbiology and Biotechnology, 19, 1250–1258.

Van Wees S C M, Van der Ent S, Pieterse C M J. 2008. Plant immune responses triggered by beneficial microbes. Current Opinion in Plant Biology, 11, 443–448.

Xu P F, Wu J J, Xue A, Li W B, Chen W Y, Wei L, Lv H Y, Lin S F, Fan S J, Li N H, Wang X, Jiang L Y, Zhang S Z. 2012. Differentially expressed genes of soybean during infection by Phytophthora sojae. Journal of Integrative Agriculture, 11, 368–377.

Yang D, Wang B, Wang J, Chen Y, Zhou M. 2009. Activity and efficacy of Bacillus subtilis strain NJ-18 against rice sheath blight and Sclerotinia stem rot of rape. Biological Control, 51, 61–65.

Yang W, Yan H, Zhang J, Gao Y, Xu W, Shang J, Luo Y. 2018. Inhibition of biofilm formation by Cd2+ on Bacillus subtilis 1JN2 depressed its biocontrol efficiency against Ralstonia wilt on tomato. Microbiological Research, 215, 1–6.

Yao M A, Zhang Q L, Yang Z M, Yun L I, Yan Y L, Ping S Z, Wei L U. 2016. Identification of the nitrogen-fixing Pseudomonas stutzeri major flagellar gene regulator FleQ and its role in biofilm formation and root colonization. Journal of Integrative Agriculture, 15, 339–348.

Yi Y, Kuipers O P. 2017. Development of an efficient electroporation method for rhizobacterial Bacillus mycoides strains. Journal of Microbiological Methods, 133, 82–86.

Yu X, Ai C, Xin L, Zhou G. 2011. The siderophore-producing bacterium, Bacillus subtilis CAS15, has a biocontrol effect on Fusarium wilt and promotes the growth of pepper. European Journal of Soil Biology, 47, 138–145.

Yuan H, Zhu Z, Liu S, Ge T, Jing H, Li B, Liu Q, Lynn T M, Wu J, Kuzyakov Y. 2016. Microbial utilization of rice root exudates: C-13 labeling and PLFA composition. Biology and Fertility of Soils, 52, 615–627.

Zhang F, Ge H, Zhang F, Guo N, Wang Y, Chen L, Ji X, Li C. 2016. Biocontrol potential of Trichoderma harzianum isolate T-aloe against Sclerotinia sclerotiorum in soybean. Plant Physiology and Biochemistry, 100, 64–74.

Zhang J, Wu X, Zhang X, Pan H, Shearer J E S, Zhang H, Sun F. 2021. Zn2+-dependent enhancement of Atrazine biodegradation by Klebsiella variicola FH-1. Journal of Hazardous Materials, 411, 125112.

Zhang J, Xiao K, Li M, Hu H, Zhang X, Liu J, Zhang Y. 2022. SsAGM1-mediated uridine diphosphate-n-acetylglucosamine synthesis is essential for development, stress response, and pathogenicity of Sclerotinia sclerotiorum. Frontiers in Microbiology, 13, 938784.

Zhang J, Xu Y, Liang S, Ma X, Lu Z, Sun P, Zhang H, Sun F. 2020. Synergistic effect of Klebsiella sp. FH-1 and Arthrobacter sp. NJ-1 on the growth of the microbiota in the black soil of Northeast China. Ecotoxicology and Environmental Safety, 190, 110079.

Zhang M, Zhang C, Zhang S, Yu H, Pan H, Zhang H. 2021. Klebsiella jilinsis 2N3 promotes maize growth and induces resistance to northern corn leaf blight. Biological Control, 156, 104554.

Zhang N, Wang D, Liu Y, Li S, Shen Q, Zhang R. 2014. Effects of different plant root exudates and their organic acid components on chemotaxis, biofilm formation and colonization by beneficial rhizosphere-associated bacterial strains. Plant and Soil, 374, 689–700.

Zhang N, Wu K, He X, Li S Q, Zhang Z H, Shen B, Yang X M, Zhang R F, Huang, Q W, Shen Q R. 2011. A new bioorganic fertilizer can effectively control banana wilt by strong colonization with Bacillus subtilis N11. Plant and Soil, 344, 87–97.

Zhao J, Buchwaldt L, Rimmer S R, Sharpe A, McGregor L, Bekkaoui D, Hegedus D. 2009. Patterns of differential gene expression in Brassica napus cultivars infected with Sclerotinia sclerotiorum. Molecular Plant Pathology, 10, 635–649.

Zhao J, Wang J, An L, Doerge R, Chen Z J, Grau C R, Meng J, Osborn T C. 2007. Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus. Planta, 227, 13–24.

Zhao Q, Shen Q, Ran W, Xiao T, Xu D, Xu Y. 2011. Inoculation of soil by Bacillus subtilis Y-IVI improves plant growth and colonization of the rhizosphere and interior tissues of muskmelon (Cucumis melo L.). Biology and Fertility of Soils, 47, 507–514.

Zhou X, Yang Y, Yin Q, Zhang X, Li M. 2021. Application potential of Comamonas testosteroni ZG2 for vegetable cultivation in nickel and cadmium polluted soil. Environmental Technology & Innovation, 23, 101626.

Zhu D, Niu Y, Fan K, Zhang F, Wang Y, Wang G, Zheng S. 2021. Selenium-oxidizing Agrobacterium sp. T3F4 steadily colonizes in soil promoting selenium uptake by pak choi (Brassica campestris). Science of the Total Environment, 791, 148294.