中国农业科学 ›› 2020, Vol. 53 ›› Issue (7): 1322-1337.doi: 10.3864/j.issn.0578-1752.2020.07.003

• 作物遗传育种·种质资源·分子遗传学 • 上一篇    下一篇

转基因油菜筛查阳性质粒分子的研制及应用

李俊1,李夏莹2,王颢潜2,翟杉杉1,陈子言2,高鸿飞1,李允静1,吴刚1,张秀杰2,武玉花1   

  1. 1. 中国农业科学院油料作物研究所/农业部油料作物生物学与遗传育种重点实验室,武汉 430062
    2. 农业农村部科技发展中心,北京 100025
  • 收稿日期:2019-08-07 接受日期:2019-11-13 出版日期:2020-04-01 发布日期:2020-04-14
  • 作者简介:李俊,E-mail:lijuner126@126.com。
  • 基金资助:
    转基因生物新品种培育专项(2016ZX08012003);国家自然科学基金(31601581)

Development and Application of Plasmid Reference Molecule for Genetically Modified Rapeseed Screening

Jun LI1,Xia-ying LI2,Jing-qian WANG2,Shanshan Zhai1,Zi-yan CHEN2,Hong-fei GAO1,YunJing LI1,Gang WU1,Xiu-jie ZHANG2,Yu-hua WU1   

  1. 1. Oil Crops Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Oil Crop, Ministry of Agriculture, Wuhan 430062
    2. Development Center of Science and Technology, Ministry of Agriculture and Rural Affairs, Beijing 100025
  • Received:2019-08-07 Accepted:2019-11-13 Online:2020-04-01 Published:2020-04-14

摘要: 【目的】 转基因油菜是四大转基因作物之一,是中国转基因生物安全监管的重要对象,转基因检测为转基因安全监管提供技术支撑。转基因筛查是转基因检测的第一步,筛查靶标设置不合理会导致漏检部分转基因成分。建立转基因油菜筛查策略,并研制与筛查策略配套的阳性质粒分子,将为中国的转基因油菜安全监管提供强有力的技术支撑。【方法】 通过收集数据库中登记的转基因油菜品种的外源基因元件信息,分析转基因油菜品种中常用的调控元件和标记基因,基于最大筛查覆盖率原则,确定转基因油菜的筛查靶标。通过检索数据库或查询专利,收集筛查元件的核苷酸序列。一个筛查元件通常有多个标准方法,查阅各筛查元件的检测标准,分析各标准中普通PCR引物对和实时荧光PCR引物/探针组合在筛查元件核苷酸序列中的位置,根据引物探针的结合位点,确定拟构建到质粒上的各筛查元件的核苷酸序列。人工合成各筛查元件和油菜内标基因的融合序列,克隆到常用质粒pUC18,构建阳性质粒分子。采用各筛查元件的普通PCR和实时荧光PCR方法,评估阳性质粒分子的适用性。【结果】 建立了转基因油菜的筛查策略,通过检测CaMV 35S启动子、FMV 35S启动子、BarPATCP4-EPSPSNPTⅡHPT、NOS终止子和PinⅡ终止子共9个基因元件,可实现已知信息转基因油菜品种的全覆盖。构建出聚合9个筛查元件和2个油菜内标基因HMG I/YCruA的转基因油菜筛查质粒分子pYCSC-1905。9个筛查元件和2个油菜内标基因的扩增效率均在90%—110%,证明质粒分子上的不同靶标序列没有相互干扰,影响PCR的扩增效率。质粒分子pYCSC-1905可用作9个筛查元件和2个油菜内标基因的通用阳性对照,适用于国家标准(GB/T和农业农村部公告)、出入境检验检疫行业标准(SN/T)和欧盟标准。【结论】 提出的转基因油菜筛查策略涵盖9个基因元件,可实现从商业化到安全评价各阶段转基因油菜的筛查检测,显著降低转基因油菜的筛查漏检率。研制的配套质粒分子pYCSC-1905为转基因油菜筛查和各基因元件标准方法的应用提供了通用标准样品,保证检测机构间检测数据的准确性和可比性。

关键词: 转基因油菜, 筛查, 筛查策略, 阳性质粒分子, 应用

Abstract: 【Objective】 Rapeseed is one of the four major genetically modified (GM) crops, the production and application of GM rapeseed must be regulated in China. Performance of GMO detection is the prerequisite to implement GMO regulations, screening is the first step to determine the presence or absence of GMO ingredients in testing samples. Appropriate selection of screening targets can effectively reduce the chance of missed detection of some GM ingredients. A technical platform, involving establishment of screening strategy for GM rapeseed and development of a common reference plasmid that is compatible with the screening strategy, would provide technical support for regulating GM rapeseed.【Method】 Both regulatory elements and marker genes commonly used in GM rapeseed are obtained by collecting and analyzing the GM rapeseed varieties registered in database, then the screening strategy for GM rapeseed can be determined based on the principle of maximum coverage of GM rapeseed varieties. The whole nucleotide sequences of screening elements are collected by searching nucleotide database or retrieving patent. One screening target usually has multiple standard detection methods, both the primer pairs for conventional PCR and the primers/probe combinations for real-time PCR are aligned with the nucleotide sequence of each screening target to determine the target sequence that would be integrated into plasmid. The fusion sequence of all screening elements together with rapeseed reference genes was artificially synthesized, and cloned into the plasmid pUC18 to construct a positive plasmid molecule. Both conventional PCR and real-time PCR are utilized to evaluate the applicability of constructed plasmid as positive control.【Result】 The screening strategy for transgenic rapeseed was established by detecting nine elements, involving two promoters of CaMV 35S and FMV 35S, five genes of Bar, PAT, CP4-EPSPS, NPTII, and HPT, two terminators of NOS and PinII. This screening strategy achieved full coverage of transgenic rapeseed varieties with known information. The screening plasmid pYCSC-1905 was constructed for GM rapeseed, carrying nine screening elements and 2 rapeseed reference genes of HMG I/Y and CruA. The amplification efficiencies of nine screening elements and two rapeseed reference genes were in the range from 90% to 110%, demonstrating that the amplification efficiency of screening target is not influenced due to the mutual interference of integrated fragments. The plasmid pYCSC-1905 can be used as a common positive control for nine screening targets and two rapeseed reference genes, applicable to national standards (GB/T and Declaration of Ministry of Agriculture and Rural Affairs), Entry-exit inspection and quarantine industry standards (SN/T) and European Union standards.【Conclusion】 The screening strategy covering 9 elements for GM rapeseed screening , can achieve the screening of GM rapeseed in all stages from commercialization to safety assessment, and significantly reduce the missed detection of GM rapeseed. The developed plasmid pYCSC-1905 provides a general positive control for rapeseed screening and the standard methods, and ensures the accuracy and comparability of test results between laboratories.

Key words: genetically modified rapeseed, screening, screening strategy, positive plasmid molecule, application