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Functional analysis of MdSUT2.1, a plasma membrane sucrose transporter from apple
ZHANG Bo, FAN Wen-min, ZHU Zhen-zhen, WANG Ying, ZHAO Zheng-yang
2023, 22 (3): 762-775.   DOI: 10.1016/j.jia.2022.09.012
Abstract267)      PDF in ScienceDirect      

Sugar content is a determinant of apple (Malus×domestica Borkh.) sweetness.  However, the molecular mechanism underlying sucrose accumulation in apple fruit remains elusive.  Herein, this study reported the role of the sucrose transporter MdSUT2.1 in the regulation of sucrose accumulation in apples.  The MdSUT2.1 gene encoded a protein with 612 amino acid residues that could be localized at the plasma membrane when expressed in tobacco leaf protoplasts.  MdSUT2.1 was highly expressed in fruit and was positively correlated with sucrose accumulation during apple fruit development.  Moreover, complementary growth assays in a yeast mutant validated the sucrose transport activity of MdSUT2.1.  MdSUT2.1 overexpression in apples and tomatoes resulted in significant increases in sucrose, fructose, and glucose contents compared to the wild type (WT).  Further analysis revealed that the expression levels of sugar metabolism- and transport-related genes SUSYs, NINVs, FRKs, HXKs, and TSTs increased in apples and tomatoes with MdSUT2.1 overexpression compared to WT.  Finally, unlike the tonoplast sugar transporters MdTST1 and MdTST2, the promoter of MdSUT2.1 was not induced by exogenous sugars.  These findings provide valuable insights into the molecular mechanism underlying sugar accumulation in apples.

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Three Sclerotinia species as the cause of white mold on pea in Chongqing and Sichuan of China
DENG Dong, SUN Su-li, DU Chen-zhang, XIANG Chao, LONG Jue-chen, CHEN Wei-dong, ZHU Zhen-dong
2021, 20 (11): 2957-2965.   DOI: 10.1016/S2095-3119(21)63629-8
Abstract117)      PDF in ScienceDirect      
 
White mold of pea caused by Sclerotinia sclerotiorum is a common disease in China.  However, we discovered that the diverse Sclerotinia species could cause white mold on pea plants in Chongqing and Sichuan of China during recent disease surveys.  Thus, the objective of this study was to confirm the causal agents from diseased pea plants.  The obtained isolates of white mold from Chongqing and Sichuan were identified by morphological characters and molecular characterization to determine the pathogen species, and their pathogenicity was confirmed on pea through completing Koch’s postulates.  Fungal isolates of Sclerotinia-like were obtained from diseased plants or sclerotia.  Based on morphological characteristics and molecular characterization, 30 isolates were identified to three species, six isolates as S. minor, seven as S. sclerotiorum, and 17 as S. trifoliorum.  In pathogenicity tests on pea cultivars Zhongwan 4 and Longwan 1, all 30 isolates caused typical symptoms of white mold on the inoculated plants, and the inoculated pathogens were re-isolated from the diseased plants.  This study confirmed that white mold of pea was caused by three Sclerotinia species, S. sclerotiorum, S. minor and S. trifoliorum in Chongqing and Sichuan. It is the first report that S. minor and S. trifoliorum cause white mold of pea in Southwest China.
 
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Characterization of eating quality and starch properties of two Wx alleles japonica rice cultivars under different nitrogen treatments
HUANG Shuang-jie, ZHAO Chun-fang, ZHU Zhen, ZHOU Li-hui, ZHENG Qing-huan, WANG Cai-lin
2020, 19 (4): 988-998.   DOI: 10.1016/S2095-3119(19)62672-9
Abstract139)      PDF in ScienceDirect      
To understand the effect of nitrogen (N) fertilizer on rice (Oryza sativa L.) eating and cooking quality (ECQ).  Here, we investigated the ECQ attributes, physicochemical foundation of ECQ, and amylopectin fine structure of two Waxy (Wx) alleles japonica rice cultivars Nanjing 9108 (NJ9108) and Huaidao 5 (HD5) under four N rates (0, 150, 300, and 450 kg ha–1).  Sensory and pasting properties of the two cultivars varied depending on N rates.  Compared with the control (0 kg ha–1), the overall eating quality and sensory value were significantly decreased under the N rates of 300 and 450 kg ha–1.  Further, conventional descriptive analysis showed that the stickiness and retrogradation of cooked rice were significantly decreased.  These results indicated that application of N fertilizer seems to affect the texture of cooked rice, causing it to be less sticky, lowering its retrogradation, and consequently reducing its palatability.  Results from rapid visco analyzer (RVA) revealed that the peak and breakdown viscosities significantly decreased, while the setback viscosity and peak time increased under the N rates of 300 and 450 kg ha–1.  However, no significant difference was observed when the N rate was 150 kg ha–1, indicating that less N fertilization can maintain rice ECQ.  As the N rate increasing, protein content increased, whereas apparent amylose content, starch content, and gel consistency almost unchanged.  Interestingly, compared with the control, under N treatments, the percentage of short amylopectin branches in NJ9108 was decreased, but increased in HD5, as controlled by amylopectin synthesis-related genes.  Notably, SSI and BEIIb were down-regulated in NJ9108, whereas BEIIb was up-regulated in HD5.  Thus, the palatability of both rice cultivars was significantly decreased under excessive N fertilization as a consequence of reduced stickiness and retrogradation of the cooked rice, which might have resulted from an elevated protein content and altered amylopectin fine structure.  In addition, amylopectin synthesis appeared to be affected by N fertilizer and the genotype of the rice cultivar.
 
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Straw and biochar strongly affect functional diversity of microbial metabolism in paddy soils
YUAN Hong-zhao, ZHU Zhen-ke, WEI Xiao-meng, LIU Shou-long, PENG Pei-qin, Anna Gunina, SHEN Jian-lin, Yakov Kuzyakov, GE Ti-da, WU Jin-shui, WANG Jiu-rong
2019, 18 (7): 1474-1485.   DOI: 10.1016/S2095-3119(18)62102-1
Abstract240)      PDF in ScienceDirect      
The application of straw and biochar is widely practiced for the improvement of soil fertility.  However, its impact on microbial functional profiles, particularly with regard to paddy soils, is not well understood.  The aim of this study was to investigate the diversity of microbial carbon use patterns in paddy soils amended with straw or straw-derived biochar in a 3-year field experiment in fallow soil and at various development stages of a rice crop (i.e., tillering and blooming).  We applied the community level physiological profiling approach, with 15 substrates (sugars, carboxylic and amino acids, and phenolic acid).  In general, straw application resulted in the greatest microbial functional diversity owing to the greater number of  available C sources than in control or biochar plots.  Biochar amendment promoted the use of α-ketoglutaric acid, the mineralization of which was higher than that of any other substrate.  Principal component analyses indicated that microbial functional diversity in the biochar-amended soil was separated from those of the straw-amended and control soils.  Redundancy analyses revealed that soil organic carbon content was the most important factor regulating the pattern of microbial carbon utilization.  Rhizodeposition and nutrient uptake by rice plants modulated microbial functions in paddy soils and stimulated the microbial use of N-rich substances, such as amino acids.  Thus, our results demonstrated that the functional diversity of microorganisms in organic amended paddy soils is affected by both physicochemical properties of amendment and plant growth stage. 
 
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Genome-wide association study for starch content and constitution in sorghum (Sorghum bicolor (L.) Moench)
CHEN Bing-ru, WANG Chun-yu, WANG Ping, ZHU Zhen-xing, XU Ning, SHI Gui-shan, YU Miao, WANG Nai, LI Ji-hong, HOU Jia-ming, LI Shu-jie, ZHOU Yu-fei, GAO Shi-jie, LU Xiao-chun, HUANG Rui
2019, 18 (11): 2446-2456.   DOI: 10.1016/S2095-3119(19)62631-6
Abstract124)      PDF in ScienceDirect      
Starch is the most important component in endosperm of sorghum grain.  Usually, two types of starch are present: amylose (AM) and amylopectin (AP).  The levels of AM and AP contents play a significant role in the appearance, structure, and quality of sorghum grains and in marketing applications.  In the present study, a panel of 634 sorghum (Sorghum bicolor (L.) Moench) accessions were evaluated for starch, AM, and AP contents of grain, which included a mini core collection of 242 accessions from the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) in India, and 252 landraces and 140 cultivars from China.  The average starch content was 67.64% and the average AM and AP contents were 20.19 and 79.81%, respectively.  We developed a total of 260 000 high-confidence single nucleotide polymorphism (SNP) markers in the panel of 634 accessions of S. bicolor using specific locus amplified fragment sequencing (SLAF-seq).  We performed genome-wide association studies (GWAS) of starch, AM, and AM/AP of grain and SNP markers based on a mixed linear model (MLM).  In total, 70 significant association signals were detected for starch, AM, and AM/AP ratio of grain with P<4.452×10–7, of which 10 SNPs were identified with significant starch, 51 SNPs were associated with AM, and nine SNPs were associated with the AM/AP ratio.  The Gene Ontology (GO) analysis identified 12 candidate genes at five QTLs associated with starch metabolism within the 200-kb intervals, located on chromosomes 1, 5, 6, and 9.  Of these genes, Sobic.006G036500.1 encodes peptidyl-prolyl cis-trans-isomerase CYP38 responsible for hexose monophosphate shunt (HMS) and Sobic.009G071800 encodes 6-phospho-fructokinase (PFK), which is involved in the embden-meyerhof pathway (EMP).  Kompetitive allele specific PCR (KASP) markers were developed to validate the GWAS results.  The C allele is correlated with a high starch content, while the T allele is linked with a low level of starch content, and provides reliable haplotypes for MAS in sorghum quality improvement.
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Effect of sucrose on cryopreservation of pig spermatogonial stem cells
PAN Chuan-ying, YU Shuai, ZHANG Peng-fei, WANG Bo, ZHU Zhen-dong, LIU Ying-ying, ZENG Wen-xian
2017, 16 (05): 1120-1129.   DOI: 10.1016/S2095-3119(16)61489-2
Abstract890)      PDF in ScienceDirect      
Sucrose is known to play an important role in the cryopreservation of sperm and female gonads; however, its effect on the cryopreservation of pig spermatogonial stem cells (pSSCs) has not been tested.  The aim of this work was to study the effect of sucrose during pSSC cryopreservation and to find the most effective concentration in freezing medium.  pSSCs were cryopreserved with freezing media containing different concentrations of sucrose (70, 140, 210, and 280 mmol L–1) and a control group without sucrose.  The survival rates, plasma membrane integrity, and mitochondrial membrane potential of thawed cells were detected by trypan blue (TB) staining, SYBR-14/propidium iodide (PI) dual staining, and JC-1 staining, respectively.  All the staining results showed an obvious increase in cell survival in the sucrose-treated groups as compared to that in the control group, with the exception of 280 mmol L–1 sucrose.  Moreover, the 210 mmol L–1 sucrose group yielded the highest survival rate among all the groups (P<0.05).  The results of SYBR-14/PI dual staining and JC-1 staining were consistent with those of TB staining as above described.  Quantitative real-time PCR (qRT-PCR) indicated that the mRNA levels of three apoptosis-promoting genes (BAX, APAF1 and CASPASE9) were significantly higher in thawed cells than in cells before freezing (P<0.05).  Moreover, the mRNA level of one anti-apoptotic gene (XIAP) was significantly lower in thawed cells than in cells before freezing (P<0.05).  When comparing the mRNA expression of apoptosis-related genes in thawed cells, the mRNA level of the anti-apoptotic genes in the control group was significantly lower than that in the sucrose-treated
groups (P<0.05).  Western blot analyses showed that the expression levels of cleaved CASPASE9, CASPASE3 and PARP-1 in the sucrose-treated groups were lower than those in the control group and were the lowest in the 210 mmol L–1 sucrose group.  Both qRT-PCR and Western blot analyses suggested that sucrose inhibited cell apoptosis during freezing and thawing.  Briefly, sucrose promoted pSSCs survival after freezing and thawing, especially at a concentration of 210 mmol L–1, which possibly assisted pSSC dehydration and inhibited cell apoptosis.  These findings hold great promise for further studies of the regulatory mechanism of proliferation and differentiation of pSSCs. 
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Research progress on the breeding of japonica super rice varieties in Jiangsu Province, China
WANG Cai-lin, ZHANG Ya-dong, ZHU Zhen, CHEN Tao, ZHAO Qing-yong, ZHONG Wei-gong, YANG Jie, YAO Shu, ZHOU Li-hui, ZHAO Ling, LI Yu-sheng
2017, 16 (05): 992-999.   DOI: 10.1016/S2095-3119(16)61580-0
Abstract1173)      PDF in ScienceDirect      
In this study we report the results of a decade-long breeding program for japonica super rice made by Nanjing Branch of Chinese National Center for Rice Improvement in Jiangsu Academy of Agricultural Sciences.  We concluded that selection of parents with good comprehensive traits and complementary advantages and disadvantages of both parents in the hybrid combination, and early selection of high heritability traits in earlier segregating generations could significantly improve the breeding efficiency.  The use of closely-linked functional markers in pyramiding of multiple genes could greatly increase breeding efficiency, avoiding time-consuming and laborious steps that were used in traditional breeding program.  It is also important to coordinate the yield components with variety characteristics such as yield stability, wide adaptability, lodging resistance, and an attractive grain appearance during late growth stage of rice.
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