The co-chaperone DnaJ plays an important role in protein folding and regulation of various physiological activities, and participates in several pathological processes.  DnaJ has been extensively studied in many species including humans, drosophila, mushrooms, tomatoes, and Arabidopsis.  However, few studies have examined the role of DnaJ in wheat (Triticum aestivum), and the interaction mechanism between TaDnaJs and plant viruses.  Here, we identified 236 TaDnaJs and performed a comprehensive genome-wide analysis of conserved domains, gene structure and protein motifs, chromosomal positions and duplication relationships, and cis-acting elements.  We grouped these TaDnaJs according to their domains, and randomly selected six genes from the groups for tissue-specific analysis, and expression profiles analysis under hormone stress, and 17 genes for plant virus infection stress.  In qRT-PCR, we found that among the 17 TaDnaJ genes tested, 16 genes were up-regulated after wheat yellow mosaic virus (WYMV) infection, indicating that the TaDnaJ family is involved in plant defense response.  Subsequent yeast two-hybrid assays verified the WYMV NIa, NIb and 7KD proteins interacted with TaDJC (TraesCS7A02G506000), which had the most significant changes in gene expression levels after WYMV infection.  Insights into the molecular mechanisms of TaDnaJ-mediated stress tolerance and sensitivity could inform different strategies designed to improve crop resistance to abiotic and biotic stress.  This study provides a basis for future investigation of the TaDnaJ family and plant defense mechanisms.

Nitrogen (N) loss from fertilization in agricultural fields has an unavoidable negative impact on the environment and a better
understanding of the major pathways can assist in developing the best management practices. The aim of this study was
to evaluate the fate of N fertilizers applied to acidic red soil (Ferralic Cambisol) after 19 years of mineral (synthetic) and
manure fertilizer treatments under a cropping system with wheat-maize rotations. Five field treatments were examined:
control (CK), chemical nitrogen and potash fertilizer (NK), chemical nitrogen and phosphorus fertilizer (NP), chemical nitrogen,
phosphorus and potash fertilizer (NPK) and the NPK with manure (NPKM, 70% N from manure). Based on the soil
total N storage change in 0–100 cm depth, ammonia (NH3) volatilization, nitrous oxide (N₂O) emission, N plant uptake, and
the potential N leaching loss were estimated using a mass balance approach. In contrast to the NPKM, all mineral fertilizer
treatments (NK, NP and NPK) showed increased nitrate (NO₃^–-N) concentration with increasing soil depth, indicating higher
leaching potential. However, total NH3 volatilization loss was much higher in the NPKM (19.7%) than other mineral fertilizer
treatments (≤4.2%). The N₂O emissions were generally low (0.2–0.9%, the highest from the NPKM). Total gaseous loss
accounted for 1.7, 3.3, 5.1, and 21.9% for NK, NP, NPK, and NPKM treatments, respectively. Estimated N leaching loss
from the NPKM was only about 5% of the losses from mineral fertilizer treatments. All data demonstrated that manure
incorporation improved soil productivity, increased yield, and reduced potential leaching, but with significantly higher NH₃
volatilization, which could be reduced by improving the application method. This study confirms that manure incorporation is an essential strategy in N fertilization management in upland red soil cropping system.

    The partial 16S rRNA gene sequences (100 to 500 bp) were widely used to reveal rumen bacterial composition influenced by diets, while quantification of the changed uncultured bacteria was inconvenient due to difficult designing of specific primers based on short sequences. This study evaluated the effect of forage resources on rumen bacterial diversity and developed new strategy for primer design based on short sequences to quantify the changed uncultured bacteria. Denaturing gradient gel electrophoresis (DGGE) analysis and subsequent band sequencing were used to reveal the distinct rumen bacteria composition in cows fed with two forage sources (single corn stover vs. mixed forages including alfalfa hay and corn silage). The bacterial diversity in the rumen of dairy cows fed with corn stover was lower than that with mixed forages (P<0.05). The bacterium named R-UB affiliating to uncultured Succinivibrionaceae was identified, and it was abundant in the rumen of cows fed with mixed forages compared to corn stover. The full length 16S rRNA gene sequences with identity of >97% to the R-UB 16S rRNA gene sequence were obtained from GenBank and used to design specific primers to quantify uncultured bacterium R-UB. All sequences of amplicon from the new primers were of 100% identity to R-UB sequences indicating the high specificity of new primers. Quantitative PCR confirmed that abundance of R-UB in the rumen of cows fed with corn stover was lower than those fed with mixed forages (P<0.01). New strategy for designing primers based on partial 16S rRNA genes to quantify targeted uncultured bacteria was successfully developed. The rumen bacteria descending significantly in the cows fed corn stover compared to those fed mixed forages was identified as uncultured R-UB from Succinivibrionaceae.

Twelve fluorescence-labeled microsatellite markers were used to analyze the genetic diversity of 12 domestic duck breeds and 2 wild duck breeds to determine the relationship and origin of Chinese domestic duck breeds. Gene frequency, effective number of alleles (Ne), expected heterozygosity (He), polymorphism information contents (PIC), inbreeding coefficient in population (Fis), standard genetic distance (DS), and genetic distance (DA) were calculated by FSTAT and distance and phylogenetic analysis after the dates which were output from the Microsatellite-Toolkit software. Genetic distances between 12 domestic duck breeds and 2 wild duck breeds were analyzed by variance analysis. Unweighted pair group method with arithmetic mean (UPGMA) and phylogenetic trees used for cluster analysis were structured. The results indicated that 11 loci had medium- or high-level genetic diversity among the 12 loci, which could be efficiently used in the detection of the genetic parameters of each population. The values of He were 0.5414 to 0.7343, those of PIC proved similar, and those of Fis were 0.1101 to 0.3381 among all populations. All breeds were clustered into three groups by UPGMA phylogenetic trees. Banzui duck was clustered into a separate group. Differences of the DA were analysed by t-test. The results showed that difference in DA between the 12 domestic duck breeds and Lvtou duck and the Banzui duck were very significant (P<0.01), indicating that these 12 domestic duck breeds originated from Lvtou wild duck, but not Banzui duck.

The dominant genic male sterility (DGMS) gene CDMs399-3 derived from a spontaneous mutation in the line 79-399-3 of spring cabbage (Brassica oleracea var. capitata L.), has been successfully applied in hybrid seed production of several cabbage cultivars in China. During the development of dominant male sterility lines in cabbage, the conventional identification of homozygous male-sterile plants (CDMs399-3/CDMs399-3) is a laborious and time-consuming process. For marker-assisted selection (MAS) of the gene CDMs399-3 transferred into key spring cabbage line 397, expressed sequence tag-simple sequence repeats (EST-SSR) and SSR technology were used to identify markers that were linked to CDMs399-3 based on method of bulked segregant analysis (BSA). By screening a set of 978 EST-SSRs and 395 SSRs, a marker BoE332 linked to the CDMs399-3 at a distance of 3.6 cM in the genetic background of cabbage line 397 were identified. 7 homozygous male-sterile plants in population P1170 with 20 plants were obtained finally via MAS of BoE332. Thus, BoE332 will greatly facilitate the transferring of the gene CDMs399-3 into the key spring cabbage line 397 and improve the application of DGMS in cabbage hybrid breeding.

This paper first analyzes the reason that agricultural geographic information gives rise to semantic heterogeneity and solution thereof. Although OWL (web ontology language) is the standard of ontology representation language in semantic web, it is insufficient in representing spatial characteristics, especially spatial relationship. Consequently it is pointed out to build geo-ontology by virtue of three theories such as mereology, location theory and topology in this paper. This paper introduces mereology, location theory and topology, and then discusses how to adopt these three theories to build geo-ontology. The outcome of experiment shows that solution put forward by this paper is feasible.

Eleven barnyardgrass populations were assayed. The highest resistant population was Geqiushan R with RI 125.45 resulted from the seed assay and 87.29 resulted from the whole plant bioassay followed by 853 R with RI 2.79 resulted from the seed assay and 6.04 resulted from the whole plant bioassay. The resistance level of other nine populations was low with RI 1.13-2.61 resulted from the seed assay and 1.48-3.63 resulted from the whole plant bioassay. The activity of an important metabolic enzyme glutathione S-transferases (GSTs) and three protective enzymes (SOD, POD, and CAT) were determined in vivo for Geqiushan R, 853 R, and Wudalianchi R. Compared with the S controls, the activities of POD in Geqiushan R, GSTs in 853 R, and Wudalianchi R were increased.

To obtain transgenic cabbage line with broad insect resistance, a new synthetic Bacillus thuringiensis cry1Ba3 gene was introduced into white cabbage via Agrobacterium tumefaciens-mediated transformation and 37 transformants were obtained. Polymerase chain reaction (PCR) and Southern blot analyses confirmed that cry1Ba3 was successfully inserted into the genome of cabbage. Reverse transcription-polymerase chain reaction (RT-PCR) demonstrated that cry1Ba3 was expressed. Western blot results confirmed the production of insecticidal protein encoded by cry1Ba3. Insect bioassays showed that transgenic cabbages effectively controlled both susceptible and Cry1Ac-resistant diamondback moth (DBM) larvae.