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Fingerprinting 146 Chinese chestnut (Castanea mollissima Blume) accessions and selecting a core collection using SSR markers
NIE Xing-hua, WANG Ze-hua, LIU Ning-wei, SONG Li, YAN Bo-qian, XING Yu, ZHANG Qing, FANG Ke-feng, ZHAO Yong-lian, CHEN Xin, WANG Guang-peng, QIN Ling, CAO Qing-qin
2021, 20 (5): 1277-1286.   DOI: 10.1016/S2095-3119(20)63400-1
Abstract160)      PDF in ScienceDirect      
Chinese chestnut is an important nut tree around the world.  Although the types of Chinese chestnut resources are abundant, resource utilization and protection of chestnut accessions are still very limited.  Here, we fingerprinted and determined the genetic relationships and core collections of Chinese chestnuts using 18 fluorescently labeled SSR markers generated from 146 chestnut accessions.  Our analyses showed that these markers from the tested accessions are highly polymorphic, with an average allele number (Na) and polymorphic information content (PIC) of 8.100 and 0.622 per locus, respectively.  Using these strongly distinguishing markers, we successfully constructed unique fingerprints for 146 chestnut accessions and selected seven of the SSR markers as core markers to rapidly distinguish different accessions.  Our exploration of the genetic relationships among the five cultivar groups indicated that Chinese chestnut accessions are divided into three regional type groups: group I (North China (NC) and Northwest China (NWC) cultivar groups), group II (middle and lower reaches of the Yangtze River (MLY) cultivar group) and group III (Southeast China (SEC) and Southwest China (SWC) cultivar groups).  Finally, we selected 45 core collection members which represent the most genetic diversity of Chinese chestnut accessions.  This study provides valuable information for identifying chestnut accessions and understanding the phylogenetic relationships among cultivar groups, which can serve as the basis for efficient breeding in the future.
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The MADS-box transcription factor CmAGL11 modulates somatic embryogenesis in Chinese chestnut (Castanea mollissima Blume)
GAO Yue-rong, SUN Jia-chen, SUN Zhi-lin, XING Yu, ZHANG Qing, FANG Ke-feng, CAO Qing-qin, QIN Ling
2020, 19 (4): 1033-1043.   DOI: 10.1016/S2095-3119(20)63157-4
Abstract139)      PDF in ScienceDirect      
Somatic embryogenesis (SE) is an effective approach of in vitro regeneration that depends on plant cell totipotency. However, largely unknown of molecular mechanisms of SE in woody plants such as Chinese chestnut (Castanea mollissima Blume), limits the development of the woody plant industry. Here, we report the MADS-box transcription factor CmAGL11 in Chinese chestnut. CmAGL11 transcripts specifically accumulated in the globular embryo. Overexpression of CmAGL11 in chestnut callus enhanced its SE capacity, and the development of somatic embryos occurred significantly faster than in the control. RNA-seq results showed that CmAGL11 affects the expression of several genes related to the gibberellin, auxin, and ethylene pathways. Moreover, the analysis of DNA methylation status indicated that the promoter methylation plays a role in regulation of CmAGL11 expression during SE. Our results demonstrated that CmAGL11 plays an important role in the SE process in Chinese chestnut, possibly by regulating gibberellin, auxin, and ethylene pathways. It will help establish an efficient platform to accelerate genetic improvement and germplasm innovation in Chinese chestnut.
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Causes of maize density loss in farmers’ fields in Northeast China
ZHAO Ying-jie, XING Sen, ZHANG Qing-song, ZHANG Fu-suo, MA Wen-qi
2019, 18 (8): 1680-1689.   DOI: 10.1016/S2095-3119(18)62101-X
Abstract169)      PDF in ScienceDirect      
Increasing plant density is an effective and important way to reduce maize yield gaps in Northeast China.  However, the fact is that a significant plant density gap exists between optimum plant density and actual plant density in farmers’ fields.  To quantify the density gap between planned planting density and final harvest plant density (HPD), we studied 60 farmers’ fields on three types of soil for three crop seasons from 2015 to 2017 by measuring their plant-plant distance, actual seedlings density (ASD), final HPD and yield.  We also explored the potential causes of density loss by digging the places where the seedlings were missing for two consecutive years in 2016–2017.  Results show that the three-year average HPD in farmers’ fields was 59 699 plants ha–1, which was significantly lower than the planned density, including both the machine setting density (MSD; 67 962 plants ha–1) and theoretical plant density (TPD; 67 467 plants ha–1).  No significant difference was found in HPD between years and soil types.  However, for MSD and TPD, the average value in 2015 was significantly higher than that in 2016 and 2017.  No significant difference between soil types was observed.  Furthermore, the results from 2016 till 2017 indicated that a lack of seeds in the soil, a failure to germinate due to low-quality seeds, and a lack of seedlings breaking out of the soil due to environmental problems explained approximately 60.88, 10.33 and 28.80% of density loss, respectively.  According to our survey, 63% of farmers did not know their own TPD and HPD, and 54% of farmers did not know the density loss.  Therefore, we argue that farmers’ limited knowledge of density and density loss is an urgent problem that needs to be solved in maize production.  These observations will be useful for determining best management practices for maize production and for providing helpful suggestions for machine improvement. 
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Spatial-temporal evolution of vegetation evapotranspiration in Hebei Province, China
WANG Qian-feng, TANG Jia, ZENG Jing-yu, QU Yan-ping, ZHANG Qing, SHUI Wei, WANG Wu-lin, YI Lin, LENG Song
2018, 17 (09): 2107-2117.   DOI: 10.1016/S2095-3119(17)61900-2
Abstract422)      PDF in ScienceDirect      
Evapotranspiration (ET) is the sum of soil or water body evaporation and plant transpiration from the earth surface and ocean to the atmosphere, and thus plays a significant role in regulating carbon and water resource cycles.  The time-series data set from the remote sensing MOIDS product (MOD16) was used to study the spatial-temporal evolution of vegetation evapotranspiration in salinized areas during 2000–2014 by analyzing the variability, spatial patterns and Mann-Kendall (MK) nonparametric trends for the time series.  The results indicate that inter-annual and intra-annual variations of ET across various vegetated areas show seasonal changes, with the abnormal months identified.  The cultivated land displays a greater degree of spatial heterogeneity and the spatial pattern of ET in the area covered by broadleaved deciduous forests corresponds to a higher ET rate and increased water consumption.  A widespread decline of ET is observed only in cultivated areas.  However, agricultural cultivation doesn’t worsen water shortage and soil salinization problems in the region, and water shortage problems are worsening for other vegetated areas.  This research provides a basis of reference for the reasonable allocation of water resources and restructuring of vegetation patterns in salinized areas.
 
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Carbendazim sensitivity in populations of Colletotrichum gloeosporioides complex infecting strawberry and yams in Hubei Province of China
HAN Yong-chao, ZENG Xiang-guo, XIANG Fa-yun, ZHANG Qing-hua, GUO Cong, CHEN Feng-ying, GU Yu-chen
2018, 17 (06): 1391-1400.   DOI: 10.1016/S2095-3119(17)61854-9
Abstract539)      PDF in ScienceDirect      
The ascomycete fungus Colletotrichum gloeosporioides is a devastating plant pathogen with a wide host range and worldwide distribution.  Carbendazim has been widely used to control anthracnose caused by the C. gloeosporioides complex in China for more than 30 years and resistance to carbendazim has been reported in China.  A total of 125 Colletotrichum isolates of strawberry and yam were collected from different geographical regions in Hubei Province, China.  Approximately 52.8% of Colletotrichum spp. isolates showed resistance to carbendazim.  The isolates tested in this study belong to four species, and the frequencies of resistant isolates differed across Colletotrichum species.  Resistant isolates were found in C. siamense and C. fructicola.  In contrast, all isolates of C. gloeosporioides and C. aenigma were sensitive to carbendazim.  Highly carbendazim-resistant isolates harbored the E198A mutation in the β-tubulin 2 (TUB2) gene, whereas moderately carbendazim-resistant isolates harbored the F200Y mutation in the TUB2 gene.  Carbendazim-sensitive Colletotrichum isolates in this study were not genetically similar enough to form a separate cluster from resistant isolates.  The result of this study emphasizes the importance of knowing which Colletotrichum sp. is present, when strategies for disease control are made.
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Nitrous oxide emissions following seasonal freeze-thaw events from arable soils in Northeast China
CHEN Zhe, YANG Shi-qi, ZHANG Ai-ping, JING Xin, SONG Wei-min, MI Zhao-rong, ZHANG Qingwen, WANG Wen-ying, YANG Zheng-li
2018, 17 (01): 231-246.   DOI: 10.1016/S2095-3119(17)61738-6
Abstract614)      PDF in ScienceDirect      
Seasonal soil freeze-thaw events may enhance soil nitrogen transformation and thus stimulate nitrous oxide (N2O) emissions in cold regions.  However, the mechanisms of soil N2O emission during the freeze-thaw cycling in the field remain unclear.  We evaluated N2O emissions and soil biotic and abiotic factors in maize and paddy fields over 20 months in Northeast China, and the structural equation model (SEM) was used to determine which factors affected N2O production during non-growing season.  Our results verified that the seasonal freeze-thaw cycles mitigated the available soil nitrogen and carbon limitation during spring thawing period, but simultaneously increased the gaseous N2O-N losses at the annual time scale under field condition.  The N2O-N cumulative losses during the non-growing season amounted to 0.71 and 0.55 kg N ha–1 for the paddy and maize fields, respectively, and contributed to 66 and 18% of the annual total.  The highest emission rates (199.2–257.4 μg m–2 h–1) were observed during soil thawing for both fields, but we did not observe an emission peak during soil freezing in early winter.  Although the pulses of N2O emission in spring were short-lived (18 d), it resulted in approximately 80% of the non-growing season N2O-N loss.  The N2O burst during the spring thawing was triggered by the combined impact of high soil moisture, flush available nitrogen and carbon, and rapid recovery of microbial biomass.  SEM analysis indicated that the soil moisture, available substrates including NH4+ and dissolved organic carbon (DOC), and microbial biomass nitrogen (MBN) explained 32, 36, 16 and 51% of the N2O flux variation, respectively, during the non-growing season.  Our results suggested that N2O emission during the spring thawing make a vital contribution of the annual nitrogen budget, and the vast seasonally frozen and snow-covered croplands will have high potential to exert a positive feedback on climate change considering the sensitive response of nitrogen biogeochemical cycling to the freeze-thaw disturbance.   
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Soil shear properties as influenced by straw content: An evaluation of field-collected and laboratory-remolded soils
FANG Hui-min, ZHANG Qing-yi, JI Chang-ying, GUO Jun
2016, 15 (12): 2848-2854.   DOI: 10.1016/S2095-3119(15)61327-2
Abstract992)      PDF in ScienceDirect      
    Following a rice or wheat harvest, a large amount of crop residue (straw) is retained in fields. The straw is often incorporated into the soil in order to increase the soil organic carbon storage and to reduce soil erosion. However, it has become apparent that the incorporated straw can significantly alter soil shear properties, which can dramatically affect energy inputs for tilling and other soil management practices. In this study, laboratory-remolded wheat straw-soil samples were compared with field-collected straw-soil samples; we found high correlations for the cohesion (R2=0.9084) and internal friction angle (R2=0.9548) properties of the samples. Shear tests on rice and wheat straw with different moisture content levels clearly demonstrated the relatively higher shear strength of wheat straw compared to rice straw. The cohesion of remolded rice and wheat straw-soil samples exhibited an increasing linear trend with an increase in densities, whereas the internal friction angle data for these samples exhibited a quadratic trend. Overlapping the cohesion curves revealed that the wheat straw-soil and rice straw-soil samples had the same cohesion at a straw density of 0.63%. Similar results were obtained when the internal fraction angle curves overlapped; the resultant point of intersection was observed at a straw density of 0.46%. As a whole, the remolded sample methodology was found suitable to simulate the shear properties of soils sampled directly from fields.
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Using side-dressing technique to reduce nitrogen leaching and improve nitrogen recovery efficiency under an irrigated rice system in the upper reaches of Yellow River Basin, Northwest China
ZHANG Ai-ping, GAO Ji, LIU Ru-liang, ZHANG Qing-wen, CHEN Zhe, YANG Shi-qi, YANG Zheng-li
2016, 15 (1): 220-231.   DOI: 10.1016/S2095-3119(14)60952-7
Abstract1936)      PDF in ScienceDirect      
The excessive nitrogen (N) fertilizer input coupled with flood irrigation might result in higher N leaching and lower nitrogen recovery efficiency (NRE). Under an intensive rice system in the Ningxia irrigation region, China, environmental friendly N management practices are heavily needed to balance the amount of N input for optimum crop production while minimize the nitrogen loss. The objective of this study was to determine the influences of side-dressing (SD) technique in mechanical transplanting systems on the NRE, N leaching losses and rice yield in anthropogenic-alluvial soil during two rice growing seasons (2010-2011). Four fertilizer N treatments were established, including conventional urea rate (CU, 300 kg ha–1 yr–1); higher SD of controlled-release N fertilizer rate (SD1, 176 kg ha–1 yr–1); lower SD of controlled-release N fertilizer rate (SD2, 125 kg ha–1 yr–1); and control (CK, no N fertilizer). Field lysimeters were used to quantify drainage from undisturbed soil during six rice growing stages. Meanwhile, the temporal variations of total nitrigen (TN), NO3 –-N, and NH4 +-N concentrations in percolation water were examined. The results showed that SD1 substantially improved NRE and reduced N leaching losses while maintaining rice yields. Across two years, the averaged NRE under SD1 treatment increased by 25.5% as relative to CU, but yet the rice yield was similar between two treatments. On average, the nitrogen loss defined as TN, NH4 +-N, and NO3 –-N under the SD1 treatment reduced by 27.4, 37.2 and 24.1%, respectively, when compared with CU during the study periods. Although the SD2 treatment could further reduce N leaching loss to some extent, this technique would sharply decline rice yield, with the magnitude of as high as 21.0% relative to CU treatment. Additionally, the average NRE under SD2 was 11.2% lower than that under SD1 treatment. Overall, the present study concluded that the SD technique is an effective strategy to reduce N leaching and increase NRE, thus potentially mitigate local environmental threat. We propose SD1 as a novel alternative fertilizer technique under an irrigated rice-based system in Ningxia irrigation region when higher yields are under consideration.
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Long-Term Manure Amendments Enhance Soil Aggregation and Carbon Saturation of Stable Pools in North China Plain
DU Zhang-liu, WU Wen-liang, ZHANG Qing-zhong, GUO Yan-bin , MENG Fan-qiao
2014, 13 (10): 2276-2285.   DOI: 10.1016/S2095-3119(14)60823-6
Abstract1286)      PDF in ScienceDirect      
Organic amendment is considered as an effective way to increase soil organic carbon (SOC) stock in croplands. To better understand its potential for SOC sequestration, whether SOC saturation could be observed in an intensive agricultural ecosystem receiving long-term composted manure were examined. Different SOC pools were isolated by physical fractionation techniques of a Cambisol soil under a long-term manure experiment with wheat-maize cropping in North China Plain. A field experiment was initiated in 1993, with 6 treatments including control (i.e., without fertilization), chemical fertilizer only, low rate of traditional composted manure (7.5 t ha-1), high rate of traditional composted manure (15 t ha-1), low rate of bio-composted manure (7.5 t ha-1) and high rate of bio-composted manure (15 t ha-1). The results showed that consecutive (for up to 20 years) composted manure amendments significantly improved soil macro-aggregation, aggregate associated SOC concentration, and soil structure stability. In detail, SOC concentration in the sand-sized fraction (>53 μm) continued to increase with manure application rate, while the silt (2-53 μm) and clay (<2 μm) particles showed no further increase with greater C inputs, exhibiting the C saturation. Further physical separation of small macro-aggregates (250-2 000 μm) into subpools showed that the non-protected coarse particulate organic matter (cPOM, >250 μm) was the fraction in which SOC continued to increase with increasing manure application rate. In contrast, the chemical and physical protected C pools (i.e., micro-aggregates and silt-clay occluded in the small macroaggregates) exhibited no additional C sequestration when the manure application rate was increased. It can be concluded that repeated manure amendments can increase soil macro-aggregation and lead to the increase in relatively stable C pools, showing hierarchical saturation behavior in the intensive cropping system of North China Plain.
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Technologies for Efficient Use of Irrigation Water and Energy in China
ZHANG Qing-tao, XIA Qing, Clark C K Liu , Shu Geng
2013, 12 (8): 1363-1370.   DOI: 10.1016/S2095-3119(13)60544-4
Abstract1690)      PDF in ScienceDirect      
While the shortage of water and energy is a well-recognized worldwide natural resources issue, little attention has been given to irrigation energy efficiency. In this paper, we examine the potential energy savings that can be achieved by implementing improved irrigation technologies in China. The use of improved irrigation management measures such as a flow meter, irrigation scheduling, and/or regular maintenance and upgrades, typically reduces the amount of water pumped over the course of a growing season. The total energy saved by applying these improved measures could reach 20%, as compared with traditional irrigation methods. Two methods of irrigation water conveyance by traditional earth canal and low pressure pipeline irrigation (LPPI) were also evaluated. Our study indicated that LPPI could save 6.48×109 kWh yr-1 when applied to 11 Chinese provinces. Also, the CO2 emission was reduced by 6.72 metric tons per year. Among these 11 surveyed provinces, the energy saving potential for two provinces, Hebei and Shandong, could reach 1.45×109 kWh yr-1. Using LPPI, potential energy saved and CO2 emissions reduced in the other 20 Chinese provinces were estimated at about 2.97×109 kWh yr-1 and 2.69 metric tons per year, respectively. The energy saving potential for Heilongjiang, a major agriculture province, could reach 1.77×109 kWh yr-1, which is the largest in all provinces. If LPPI is applied to the entire country, average annual energy saving of more than 9 billion kWh and average annual CO2 emission reduction of more than 9.0 metric tons could be realized. Rice is one of the largest users of the world’s fresh water resources. Compared with continuous flooding irrigation, intermittent irrigation (ITI) can improve yield and water-use efficiency in paddy fields. The total increments of net output energy and yield by ITI in paddy fields across China could reach 2.5×1016 calories and 107 tons, respectively. So far only a small part of agricultural land in China has adopted water and energy saving technologies. Therefore, potential water and energy savings in China by adapting improved irrigation technology could be significant and should be carefully studied and applied.
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Effects of Evapotranspiration on Mitigation of Urban Temperature by Vegetation and Urban Agriculture
QIU Guo-yu, LI Hong-yong, ZHANG Qing-tao, CHEN Wan, LIANG Xiao-jian , LI Xiang-ze
2013, 12 (8): 1307-1315.   DOI: 10.1016/S2095-3119(13)60543-2
Abstract1995)      PDF in ScienceDirect      
The temperature difference between an urban space and surrounding non-urban space is called the urban heat island effect (UHI). Global terrestrial evapotranspiration (ET) can consume 1.4803×1023 joules (J) of energy annually, which is about 21.74% of the total available solar energy at the top of atmosphere, whereas annual human energy use is 4.935×1020 J, about 0.33% of annual ET energy consumption. Vegetation ET has great potential to reduce urban and global temperatures. Our literature review suggests that vegetation and urban agricultural ET can reduce urban temperatures by 0.5 to 4.0°C. Green roofs (including urban agriculture) and water bodies have also been shown to be effective ways of reducing urban temperatures. The cooling effects on the ambient temperature and the roof surface temperature can be 0.24-4.0°C and 0.8-60.0°C, respectively. The temperature of a water body (including urban aquaculture) can be lower than the temperature of the surrounding built environment by between 2 and 6°C, and a water body with a 16 m2 surface area can cool up to 2 826 m3 of nearby space by 1°C. Based on these findings, it can be concluded that the increase of evapotranspiration in cities, derived from vegetation, urban agriculture, and water body, can effectively mitigate the effect of urban heat islands.
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Soil Aggregate Stability and Aggregate-Associated Carbon Under Different Tillage Systems in the North China Plain
DU Zhang-liu, REN Tu-sheng, HU Chun-sheng, ZHANG Qing-zhong , Humberto Blanco-Canqui
2013, 12 (11): 2114-2123.   DOI: 10.1016/S2095-3119(13)60428-1
Abstract1270)      PDF in ScienceDirect      
The influences of tillage systems on soil carbon (C) stocks have been studied extensively, but the distribution of soil C within aggregate fractions is not well understood. The objective of this study was to determine the influences of various tillage systems on soil aggregation and aggregate-associated C under wheat (Triticum aestivum L.) and corn (Zea mays L.) double cropping systems in the North China Plain. The experiment was established in 2001, including four treatments: moldboard plow (MP) with residue (MP+R) and without residue (MP-R), rotary tillage with residue (RT), and no-till with residue (NT). In 2007 soil samples were collected from the 0-5, 5-10, and 10-20 cm depths, and were separated into four aggregate-size classes (>2 000, 250-2 000, 53-250, and <53 μm) by wet-sieving method. Aggregate-associated C was determined, and the relationships between total soil C concentration and aggregation-size fractions were examined. The results showed that NT and RT treatments significantly increased the proportion of macroaggregate fractions (>2 000 and 250-2 000 μm) compared with the MP-R and MP+R treatments. Averaged across all depths, mean weight diameters of aggregates (MWD) in NT and RT were 47 and 20% higher than that in MP+R. The concentration of bulk soil organic C was positively correlated with MWD (r=0.98; P=0.024) and macroaggregate fraction (r=0.96; P=0.036) in the 0-5 cm depth. In the 0-20 cm depth, comparing with MP+R, total C occluded in the >2 000 μm fraction was increased by 9 and 6% under NT and RT, respectively. We conclude that adoption of conservation tillage system, especially no-till, can increase soil macro-aggregation and total C accumulation in macroaggregates, which may improve soil C sequestration in the intensive agricultural region of the North China Plain.
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Identification of Molecular Markers for a Aphid Resistance Gene in Sorghum and Selective Efficiency Using These Markers
CHANG Jin-hua, CUI Jiang-hui, XUE Wei, ZHANG Qing-wen
2012, 12 (7): 1086-1092.   DOI: 10.1016/S1671-2927(00)8633
Abstract1430)      PDF in ScienceDirect      
In this study, an F2 segregated population obtained by hybridization between the aphid-sensitive sorghum strain Qiansan and aphid-resistant cultivar Henong 16 was used to establish an aphid-resistant pool and an aphid-sensitive pool. 192 pairs of AFLP (amplified fragment length polymorphism) marker primers were screened in these pools using BSA (bulked segregant analysis). Three pairs of EcoR I-CTG/Mse I-CCT, EcoR I-CTG/Mse I-CAT, and EcoR I-AGT/Mse I-CCC showed linkage with aphis resistance. EcoR I-CTG/Mse I-CCT-475, EcoR I-CTG/Mse I-CAT-390, and EcoR I-AGT/Mse I-CCC- 350 (E42/M52-350) were mapped within 6, 10, and 13 cM distances with the aphid-resistant gene by using Mapmaker 3.0 software. The bands amplified by EcoR I-CTG/Mse I-CCT-475 and EcoR I-CTG/Mse I-CAT-390 were extracted, cloned, and sequenced. Specific primers of SCAR (sequence characterized amplified regions) were then designed from these bands. A specific band of 300 bp was amplified by a pair of SCAR primers designed based on the sequence obtained from the EcoR I-CTG/Mse I-CAT-390 marker. The SCAR marker was named SCA50. The marker was used to detect the F2, BC1, and F2:3 populations. The selective efficiency was 86.8, 91.1, and 86.3% in the BC1, F2, and F2:3 populations, respectively. The average selective efficiency was 88.2%.
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